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Showing 1–50 of 113 results
Advanced filters: Author: Justin K. Rice Clear advanced filters
  • Modeling analysis from the Global Dietary Database estimated that 70% of new global cases of type 2 diabetes are attributable to suboptimal intake of 11 dietary factors, with substantial differences in dietary risks across world regions and nations.

    • Meghan O’Hearn
    • Laura Lara-Castor
    • Rubina Hakeem
    ResearchOpen Access
    Nature Medicine
    Volume: 29, P: 982-995
  • The patterns of how yield gaps change can suggest likely future outcomes for crop growth. This study conducts a spatial and temporal analysis of yield gaps for ten major crops from 1975 to 2010 and identifies regions where crops are experiencing ‘ceiling pressure’, signalling opportunities to improve future food security.

    • James S. Gerber
    • Deepak K. Ray
    • Lindsey Sloat
    ResearchOpen Access
    Nature Food
    Volume: 5, P: 125-135
  • FACED 2.0 builds on and expands the capabilities of the free-space angular-chirp-enhanced delay microscopy approach. Its high speed, large field of view and volumetric coverage enable two-photon voltage imaging of hundreds of neurons or calcium imaging of thousands of neurons in the mouse or zebrafish brain.

    • Jian Zhong
    • Ryan G. Natan
    • Na Ji
    ResearchOpen Access
    Nature Methods
    P: 1-11
  • Oat is an important food crop, but the genetic diversity within the gene pool remains unclear. Here, the authors report the analyses of worldwide diversity and population structure of hexaploid oat, and identify signatures of structural rearrangements within the germplasm collection.

    • Wubishet A. Bekele
    • Raz Avni
    • Nicholas A. Tinker
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-14
  • Global high-resolution crop-specific estimates of greenhouse gas emissions intensity (in 2000) reveal that certain cropping practices contribute disproportionately to emissions, making them suitable targets for climate mitigation policies.

    • Kimberly M. Carlson
    • James S. Gerber
    • Paul C. West
    Research
    Nature Climate Change
    Volume: 7, P: 63-68
  • Predicting complex phenotypes from genomic information is still a challenge. Here, the authors use an evolutionarily informed machine learning approach within and across species to predict genes affecting nitrogen utilization in crops, and show their approach is also useful in mammalian systems.

    • Chia-Yi Cheng
    • Ying Li
    • Gloria M. Coruzzi
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-15
  • The impacts of climate change on agriculture differ regionally and will increase hunger globally. Reducing tariffs and other barriers to international trade would mitigate this, but trade integration requires a careful approach to avoid reducing domestic food security in food-exporting regions.

    • Charlotte Janssens
    • Petr Havlík
    • Miet Maertens
    Research
    Nature Climate Change
    Volume: 10, P: 829-835
  • This study examines the outcomes of dietary shifts across intrinsic and instrumental conservation perspectives, finding that most conservation benefits already come from a partial shift to healthier, more plant-based diets, whereas greater benefits depend on more targeted conservation action.

    • Patrick von Jeetze
    • Isabelle Weindl
    • Alexander Popp
    ResearchOpen Access
    Nature Sustainability
    Volume: 8, P: 1130-1142
  • Predators, including prawns, can suppress schistosomiasis by eating snail hosts. This modelling study finds that two prawn species in sub-Saharan Africa can reduce snail hosts and help control schistosomiasis at densities that maximize profits of associated aquaculture—a potential win–win.

    • Christopher M. Hoover
    • Susanne H. Sokolow
    • Giulio A. De Leo
    Research
    Nature Sustainability
    Volume: 2, P: 611-620
  • Completion of genome sequences for the diploid Setaria italica reveals features of C4 photosynthesis that could enable improvement of the polyploid biofuel crop switchgrass (Panicum virgatum). The genetic basis of biotechnologically relevant traits, including drought tolerance, photosynthetic efficiency and flowering control, is also highlighted.

    • Jeffrey L Bennetzen
    • Jeremy Schmutz
    • Katrien M Devos
    ResearchOpen Access
    Nature Biotechnology
    Volume: 30, P: 555-561
  • Estimates from the Global Dietary Database indicated that 2.2 million new type 2 diabetes and 1.2 million new cardiovascular disease cases were attributable to sugar-sweetened beverages worldwide in 2020, with the highest burdens in sub-Saharan Africa, Latin America and the Caribbean.

    • Laura Lara-Castor
    • Meghan O’Hearn
    • Rubina Hakeem
    ResearchOpen Access
    Nature Medicine
    Volume: 31, P: 552-564
  • Metal recycling plays a crucial role in mitigating the shortage of critical metals. Here the authors develop an electrothermal chlorination process incorporating direct electric heating into chlorination metallurgy for rapid and selective recovery of metals that are critical in electronics.

    • Bing Deng
    • Shichen Xu
    • James M. Tour
    Research
    Nature Chemical Engineering
    Volume: 1, P: 627-637
  • The GIAB genomic stratification resource defines challenging regions in three commonly used human genome references, including the first complete human genome (CHM13). These help understand strengths and weaknesses of sequencing and analysis methods.

    • Nathan Dwarshuis
    • Divya Kalra
    • Justin M. Zook
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-13
  • In this Viewpoint article, several experts discuss the microbial contributions to climate change and consider the effects of global warming, extreme weather and other consequences of climate change on microbial communities in the ocean and soil, host–microbiota interactions and the global burden of infectious diseases and ecosystem processes, and they explore open questions and research needs.

    • David A. Hutchins
    • Janet K. Jansson
    • Pankaj Trivedi
    Reviews
    Nature Reviews Microbiology
    Volume: 17, P: 391-396
  • Whether an actual Mott insulator phase exists in iron pnictides remains elusive. Here, Songet al. demonstrate an antiferromagnetic insulator phase persisting above the Néel temperature in NaFe1−xCuxAs, indicative of a Mott insulator, highlighting the role of electron correlations in high-Tcsuperconductivity.

    • Yu Song
    • Zahra Yamani
    • Pengcheng Dai
    ResearchOpen Access
    Nature Communications
    Volume: 7, P: 1-8
  • The International Strawberry Sequencing Consortium reports the draft genome of the woodland strawberry (Fragaria vesca). The genome of this diploid species should serve as a reference genome for the Fragaria genus, as the cultivated strawberry (Fragaria × ananassa) is an octoploid where F. vesca is predicted to be a subgenome donor.

    • Vladimir Shulaev
    • Daniel J Sargent
    • Kevin M Folta
    ResearchOpen Access
    Nature Genetics
    Volume: 43, P: 109-116
  • Structural variations (SV) contribute to inter-individual variability. Here, the authors describe a first-generation multi-ancestry Asian SV catalogue containing 73,035 SVs from 8392 Singaporeans to provide insights into Asian SV diversity.

    • Joanna Hui Juan Tan
    • Zhihui Li
    • Nicolas Bertin
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-15
  • Material–microbe hybrids represent a promising strategy for harnessing biochemical reactivity using sunlight, yet little is known about the effect of the interaction on the organism. Here the interface of a CO2- and N2-fixing bacterium to CdTe alters its biochemical pathways, resulting in quantum efficiency close to the theoretical limit.

    • Xun Guan
    • Sevcan Erşan
    • Chong Liu
    Research
    Nature Catalysis
    Volume: 5, P: 1019-1029
  • The power of pangenomic graphs to improve genetic mapping is still unclear. Here, the authors demonstrate its value in identification of genetic variants associated with disease resistance traits in melon using PanPipes, a pangenome construction and low-coverage genotype-by-sequencing pipeline.

    • Justin N. Vaughn
    • Sandra E. Branham
    • William P. Wechter
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-14
  • Arachnoid cuff exit points create openings in the arachnoid barrier enabling the drainage of cerebrospinal fluid and exchange of molecules and cells between the dura and the subarachnoid space, therefore physically connecting the brain and the dura.

    • Leon C. D. Smyth
    • Di Xu
    • Jonathan Kipnis
    Research
    Nature
    Volume: 627, P: 165-173
  • A de novo-designed protein that precisely assembles a chlorophyll dimer has been developed. The design matches the conformation of the native ‘special pair’ of chlorophylls that functions as the primary electron donor in natural photosynthetic reaction centers. In the designed protein, excitonically coupled chlorophylls participate in energy transfer. The proteins were also redesigned to assemble into 24-chlorophyll nanocages.

    • Nathan M. Ennist
    • Shunzhi Wang
    • David Baker
    ResearchOpen Access
    Nature Chemical Biology
    Volume: 20, P: 906-915
  • Diversified renewable energy sources can enable the sustainable operation of multisector resource systems. An artificial intelligence-assisted multi-objective design framework, applied in Ghana, explores optimized management and investment strategies balancing hydropower, bioenergy, solar and wind energies, and their impacts.

    • Jose M. Gonzalez
    • James E. Tomlinson
    • Julien J. Harou
    ResearchOpen Access
    Nature Sustainability
    Volume: 6, P: 415-427
  • Dense calcium imaging combined with co-registered high-resolution electron microscopy reconstruction of the brain of the same mouse provide a functional connectomics map of tens of thousands of neurons of a region of the primary cortex and higher visual areas.

    • J. Alexander Bae
    • Mahaly Baptiste
    • Chi Zhang
    ResearchOpen Access
    Nature
    Volume: 640, P: 435-447
  • Nano-agrochemicals and nanomedicine are two areas of active research. While there are some distinct differences there are areas of overlap and lessons which can be learned. Here, the authors encourage readers to see where lessons can be learned from nanomedicine to avoid issues and advance nano-agriculture.

    • Cong Vu Thanh
    • J. Justin Gooding
    • Melanie Kah
    ReviewsOpen Access
    Nature Communications
    Volume: 16, P: 1-9
  • The perennial grass Miscanthus is a promising biomass crop. Here, via genomics and transcriptomics, the authors reveal its allotetraploid origin, characterize gene expression associated with rhizome development and nutrient recycling, and describe the hybrid origin of the triploid M. x giganteus.

    • Therese Mitros
    • Adam M. Session
    • Daniel S. Rokhsar
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-11
  • An analysis of 24,202 critical cases of COVID-19 identifies potentially druggable targets in inflammatory signalling (JAK1), monocyte–macrophage activation and endothelial permeability (PDE4A), immunometabolism (SLC2A5 and AK5), and host factors required for viral entry and replication (TMPRSS2 and RAB2A).

    • Erola Pairo-Castineira
    • Konrad Rawlik
    • J. Kenneth Baillie
    ResearchOpen Access
    Nature
    Volume: 617, P: 764-768
  • We present the complete 62,460,029-base-pair sequence of a human Y chromosome from the HG002 genome (T2T-Y) that corrects multiple errors in GRCh38-Y and adds over 30 million base pairs of sequence to the reference.

    • Arang Rhie
    • Sergey Nurk
    • Adam M. Phillippy
    Research
    Nature
    Volume: 621, P: 344-354
  • The goal of the 1000 Genomes Project is to provide in-depth information on variation in human genome sequences. In the pilot phase reported here, different strategies for genome-wide sequencing, using high-throughput sequencing platforms, were developed and compared. The resulting data set includes more than 95% of the currently accessible variants found in any individual, and can be used to inform association and functional studies.

    • Richard M. Durbin
    • David Altshuler (Co-Chair)
    • Gil A. McVean
    ResearchOpen Access
    Nature
    Volume: 467, P: 1061-1073
  • A global network of researchers was formed to investigate the role of human genetics in SARS-CoV-2 infection and COVID-19 severity; this paper reports 13 genome-wide significant loci and potentially actionable mechanisms in response to infection.

    • Mari E. K. Niemi
    • Juha Karjalainen
    • Chloe Donohue
    ResearchOpen Access
    Nature
    Volume: 600, P: 472-477
  • Pyrochlore iridates lie at a tuning-free magnetic quantum critical point hosting several complex exotic phenomena. Here, the authors discover an electronic phase separation in single crystalline Pr2Ir2O7, where well-defined Kondo resonances are interweaved with a non-magnetic metallic phase with Kondo-destruction.

    • Mariam Kavai
    • Joel Friedman
    • Pegor Aynajian
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-8
  • The expansion of agriculture and rangelands can cause ecological spillover effects across cultivated-natural ecosystem boundaries. Here, Luskin et al. show irruptions of oil palm-subsidized wild boar alter the abundance and diversity of understory trees >1 km into a primary forest reserve in Malaysia.

    • Matthew Scott Luskin
    • Justin S. Brashares
    • Matthew D. Potts
    ResearchOpen Access
    Nature Communications
    Volume: 8, P: 1-7
  • Plant pathogens translocate type III effector (T3E) proteins that may be recognized by plants to trigger immunity. Here, the authors show that the Xanthomonas T3E XopH possesses a novel 1-phytase activity that is required for XopH-mediated immunity of plants carrying the Bs7 resistance gene.

    • Doreen Blüher
    • Debabrata Laha
    • Ulla Bonas
    ResearchOpen Access
    Nature Communications
    Volume: 8, P: 1-14