Nature Search

Evolutionary prediction of medicinal properties in the genus Euphorbia L.

Madeleine Ernst
C. Haris Saslis-Lagoudakis
Nina Rønsted
ResearchOpen Access28 Jul 2016
Scientific Reports

Volume: 6, P: 1-10
Chemically informed analyses of metabolomics mass spectrometry data with Qemistree

Qemistree uses fragmentation spectra to predict molecular fingerprints and represent their relationships as a tree, enabling comparison of metabolomics data across different experimental conditions and exploration of chemical diversity in mixtures.

Anupriya Tripathi
Yoshiki Vázquez-Baeza
Pieter C. Dorrestein
Research16 Nov 2020
Nature Chemical Biology

Volume: 17, P: 146-151
Mass Spectrometry of Flavonoid Vicenin-2, Based Sunlight Barriers in Lychnophora species

Denise Brentan Silva
Izabel Cristina Casanova Turatti
Norberto Peporine Lopes
ResearchOpen Access07 Mar 2014
Scientific Reports

Volume: 4, P: 1-8
Data sharing restrictions are hampering precision health in the European Union

Cristina Legido-Quigley
Nicolai J. Wewer Albrechtsen
Karolina Sulek
Correspondence17 Jan 2025
Nature Medicine

Volume: 31, P: 360-361
Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

Evan Bolyen
Jai Ram Rideout
J. Gregory Caporaso
Amendments and Corrections09 Aug 2019
Nature Biotechnology

Volume: 37, P: 1091
ReDU: a framework to find and reanalyze public mass spectrometry data

Repository-scale reanalysis of public mass spectrometry-based metabolomics data is facilitated by the Reanalysis of Data User (ReDU) interface, a system that uses consistent formatting and controlled vocabularies for metadata capture.

Alan K. Jarmusch
Mingxun Wang
Pieter C. Dorrestein
Research17 Aug 2020
Nature Methods

Volume: 17, P: 901-904
Auto-deconvolution and molecular networking of gas chromatography–mass spectrometry data

A machine learning workflow enables auto-deconvolution of gas chromatography–mass spectrometry data.

Alexander A. Aksenov
Ivan Laponogov
Kirill Veselkov
Research09 Nov 2020
Nature Biotechnology

Volume: 39, P: 169-173
FocusHeuristics – expression-data-driven network optimization and disease gene prediction

Mathias Ernst
Yang Du
Stephan Struckmann
ResearchOpen Access16 Feb 2017
Scientific Reports

Volume: 7, P: 1-9
Mass spectrometry searches using MASST

Mingxun Wang
Alan K. Jarmusch
Pieter C. Dorrestein
Correspondence01 Jan 2020
Nature Biotechnology

Volume: 38, P: 23-26
Feature-based molecular networking in the GNPS analysis environment

Feature-based molecular networking allows the generation of molecular networks for mass spectrometry data that can recognize isomers, incorporate relative quantification and integrate ion mobility data.

Louis-Félix Nothias
Daniel Petras
Pieter C. Dorrestein
Research24 Aug 2020
Nature Methods

Volume: 17, P: 905-908
Home chemical and microbial transitions across urbanization

Here, the authors use metabolomics and sequencing to assess changes in chemicals and microbial communities, including fungi and microeukaryotes, across an urbanization gradient in South America.

Laura-Isobel McCall
Chris Callewaert
Maria G. Dominguez-Bello
Research04 Nov 2019
Nature Microbiology

Volume: 5, P: 108-115
Statistical analysis of feature-based molecular networking results from non-targeted metabolomics data

Feature-based molecular networking is used to analyze non-targeted liquid chromatography–tandem mass spectrometry metabolomics data. This protocol includes instructions, ready-made code and a web app (https://fbmn-statsguide.gnps2.org/) for statistical analysis of feature-based molecular networking results.

Abzer K. Pakkir Shah
Axel Walter
Daniel Petras
Protocols20 Sept 2024
Nature Protocols

Volume: 20, P: 92-162
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

Evan Bolyen
Jai Ram Rideout
J. Gregory Caporaso
Correspondence24 Jul 2019
Nature Biotechnology

Volume: 37, P: 852-857
Reproducible molecular networking of untargeted mass spectrometry data using GNPS

Global Natural Product Social Molecular Networking (GNPS) is an online tandem mass spectrometry (MS²) data curation and analysis infrastructure. This protocol describes how to use GNPS to explore uploaded metabolomics data.

Allegra T. Aron
Emily C. Gentry
Pieter C. Dorrestein
Protocols13 May 2020
Nature Protocols

Volume: 15, P: 1954-1991
Metabolic signature of the pathogenic 22q11.2 deletion identifies carriers and provides insight into systemic dysregulation

Julie Courraud
Francesco Russo
Madeleine Ernst
ResearchOpen Access14 Dec 2023
Translational Psychiatry

Volume: 13, P: 1-7
Multi-omic analyses of triptan-treated migraine attacks gives insight into molecular mechanisms

Lisette J. A. Kogelman
Katrine Falkenberg
Thomas Folkmann Hansen
ResearchOpen Access31 Jul 2023
Scientific Reports

Volume: 13, P: 1-8
The role of stride frequency for walk-to-run transition in humans

Ernst Albin Hansen
Lasse Andreas Risgaard Kristensen
Pascal Madeleine
ResearchOpen Access17 May 2017
Scientific Reports

Volume: 7, P: 1-8
Cooperation among unrelated ant queens provides persistent growth and survival benefits during colony ontogeny

Madeleine M. Ostwald
Xiaohui Guo
Jennifer H. Fewell
ResearchOpen Access15 Apr 2021
Scientific Reports

Volume: 11, P: 1-10
Gestational age-dependent development of the neonatal metabolome

Madeleine Ernst
Simon Rogers
Arieh S. Cohen
Research17 Sept 2020
Pediatric Research

Volume: 89, P: 1396-1404

Search

Evolutionary prediction of medicinal properties in the genus Euphorbia L.

Chemically informed analyses of metabolomics mass spectrometry data with Qemistree

Mass Spectrometry of Flavonoid Vicenin-2, Based Sunlight Barriers in Lychnophora species

Data sharing restrictions are hampering precision health in the European Union

Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

ReDU: a framework to find and reanalyze public mass spectrometry data

Auto-deconvolution and molecular networking of gas chromatography–mass spectrometry data

FocusHeuristics – expression-data-driven network optimization and disease gene prediction

Mass spectrometry searches using MASST

Feature-based molecular networking in the GNPS analysis environment

Home chemical and microbial transitions across urbanization

Statistical analysis of feature-based molecular networking results from non-targeted metabolomics data

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

Reproducible molecular networking of untargeted mass spectrometry data using GNPS

Metabolic signature of the pathogenic 22q11.2 deletion identifies carriers and provides insight into systemic dysregulation

Multi-omic analyses of triptan-treated migraine attacks gives insight into molecular mechanisms

The role of stride frequency for walk-to-run transition in humans

Cooperation among unrelated ant queens provides persistent growth and survival benefits during colony ontogeny

Gestational age-dependent development of the neonatal metabolome

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