Nature Search

Antibiotic contamination and antimicrobial resistance dynamics in the urban sewage microbiome in India

This study used metagenomic analyses of Indian urban sewage. It revealed antibiotic contamination, resistance genes, and mobile genetic elements from multidrug-resistant pathogens, highlighting sewage as a critical antimicrobial resistance reservoir.

Deepjyoti Paul
Daizee Talukdar
Bhabatosh Das
ResearchOpen Access29 Dec 2025
Nature Communications

P: 1-19
Breakdown of semiclassical description of thermoelectricity in near-magic angle twisted bilayer graphene

Experiments on twisted bilayer graphene point to various interaction-induced phases, including the non-Fermi liquid, but its unambiguous assignment remains challenging. Here, using simultaneous transport and thermoelectric power measurements, the authors identify non-Fermi liquid signatures at low twist angle.

Bhaskar Ghawri
Phanibhusan S. Mahapatra
Arindam Ghosh
ResearchOpen Access21 Mar 2022
Nature Communications

Volume: 13, P: 1-7
A second update on mapping the human genetic architecture of COVID-19

Masahiro Kanai
Shea J. Andrews
Matthew Solomonson
ResearchOpen Access06 Sept 2023
Nature

Volume: 621, P: E7-E26
Cicer super-pangenome provides insights into species evolution and agronomic trait loci for crop improvement in chickpea

Cicer super-pangenome constructed using genome assemblies of eight Cicer annual wild species and two cultivated chickpea species provides insights into the genetic diversity and agronomic trait loci for chickpea improvement.

Aamir W. Khan
Vanika Garg
Rajeev K. Varshney
Research23 May 2024
Nature Genetics

Volume: 56, P: 1225-1234
Visualizing hot carrier dynamics by nonlinear optical spectroscopy at the atomic length scale

Here, by realising nonlinear optical spectroscopy at the atomic length scale, the authors capture complex energy-dependent dynamics of hot carriers in a single molecule. The hot carrier and the nonlinear-wave mixing signals are enhanced at the regions of high local density of states in the molecule.

Yang Luo
Shaoxiang Sheng
Manish Garg
ResearchOpen Access29 May 2025
Nature Communications

Volume: 16, P: 1-9
Mapping the human genetic architecture of COVID-19

A global network of researchers was formed to investigate the role of human genetics in SARS-CoV-2 infection and COVID-19 severity; this paper reports 13 genome-wide significant loci and potentially actionable mechanisms in response to infection.

Mari E. K. Niemi
Juha Karjalainen
Chloe Donohue
ResearchOpen Access08 Jul 2021
Nature

Volume: 600, P: 472-477
A genomic variation map provides insights into peanut diversity in China and associations with 28 agronomic traits

Resequencing of 390 peanut accessions provides insights into peanut migration and diversity in China. Genome-wide association analysis identifies loci associated with 28 agronomic traits.

Qing Lu
Lu Huang
Xiaoping Chen
Research20 Feb 2024
Nature Genetics

Volume: 56, P: 530-540
Large-scale phenotyping of patients with long COVID post-hospitalization reveals mechanistic subtypes of disease

Openshaw and colleagues find myeloid inflammation and complement activation signatures in patients with long COVID who were previously hospitalized.

Felicity Liew
Claudia Efstathiou
J. Eunice Zhang
ResearchOpen Access08 Apr 2024
Nature Immunology

Volume: 25, P: 607-621
GWAS and meta-analysis identifies 49 genetic variants underlying critical COVID-19

An analysis of 24,202 critical cases of COVID-19 identifies potentially druggable targets in inflammatory signalling (JAK1), monocyte–macrophage activation and endothelial permeability (PDE4A), immunometabolism (SLC2A5 and AK5), and host factors required for viral entry and replication (TMPRSS2 and RAB2A).

Erola Pairo-Castineira
Konrad Rawlik
J. Kenneth Baillie
ResearchOpen Access17 May 2023
Nature

Volume: 617, P: 764-768
Selective excitation of vibrations in a single molecule

The authors demonstrate selective excitation of atomic vibrations in a single molecule utilizing tip-enhanced resonance Raman spectroscopy, by precisely tuning the wavelength of the exciting laser to be resonant with the molecular vibronic transitions.

Yang Luo
Shaoxiang Sheng
Manish Garg
ResearchOpen Access14 Aug 2024
Nature Communications

Volume: 15, P: 1-9
Author Correction: Cicer super-pangenome provides insights into species evolution and agronomic trait loci for crop improvement in chickpea

Aamir W. Khan
Vanika Garg
Rajeev K. Varshney
Amendments and Corrections29 May 2024
Nature Genetics

Volume: 56, P: 1320
Real-time tracking of coherent oscillations of electrons in a nanodevice by photo-assisted tunnelling

The authors demonstrate that the collective electron oscillations driven by light in a quantum nanodevice can be measured directly in the time domain, by recording the photo-assisted tunnelling currents using the technique of homodyne beating.

Yang Luo
Frank Neubrech
Manish Garg
ResearchOpen Access13 Feb 2024
Nature Communications

Volume: 15, P: 1-8
The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication

High-quality genome sequence of cultivated peanut comprising 2.54 Gb with 20 pseudomolecules and 83,709 protein-coding gene models provides insights into genome evolution and the genetic mechanisms underlying seed size and leaf resistance in peanut.

Weijian Zhuang
Hua Chen
Rajeev K. Varshney
ResearchOpen Access01 May 2019
Nature Genetics

Volume: 51, P: 865-876
Imaging and controlling coherent phonon wave packets in single graphene nanoribbons

Here, the authors demonstrate that the atomic motion induced by broadband laser pulses in a single graphene nanoribbon (GNR) can be tracked by femtosecond coherent anti-Stokes Raman spectroscopy (CARS) when performed in a scanning tunnelling microscope (STM).

Yang Luo
Alberto Martin-Jimenez
Klaus Kern
ResearchOpen Access13 Jun 2023
Nature Communications

Volume: 14, P: 1-9
A chickpea genetic variation map based on the sequencing of 3,366 genomes

Whole-genome sequencing of 3,171 cultivated and 195 wild chickpea accessions is used to construct a chickpea pan-genome, providing insight into chickpea evolution and enabling breeding strategies that could improve crop productivity.

Rajeev K. Varshney
Manish Roorkiwal
Xin Liu
ResearchOpen Access10 Nov 2021
Nature

Volume: 599, P: 622-627
Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits

The authors performed whole-genome resequencing of 429 chickpea lines sampled from 45 countries. They identified 122 candidate regions (204 genes) under selection during chickpea breeding.

Rajeev K. Varshney
Mahendar Thudi
Xin Liu
Research29 Apr 2019
Nature Genetics

Volume: 51, P: 857-864
Whole-genome sequencing reveals host factors underlying critical COVID-19

Whole-genome sequencing, transcriptome-wide association and fine-mapping analyses in over 7,000 individuals with critical COVID-19 are used to identify 16 independent variants that are associated with severe illness in COVID-19.

Athanasios Kousathanas
Erola Pairo-Castineira
J. Kenneth Baillie
ResearchOpen Access07 Mar 2022
Nature

Volume: 607, P: 97-103
Author Correction: A chickpea genetic variation map based on the sequencing of 3,366 genomes

Rajeev K. Varshney
Manish Roorkiwal
Xin Liu
Amendments and CorrectionsOpen Access25 Mar 2022
Nature

Volume: 604, P: E12
Comparative in-silico proteomic analysis discerns potential granuloma proteins of Yersinia pseudotuberculosis

Manisha Aswal
Anjali Garg
Manish Kumar
ResearchOpen Access20 Feb 2020
Scientific Reports

Volume: 10, P: 1-13
An exploration of RSM, ANN, and ANFIS models for methylene blue dye adsorption using Oryza sativa straw biomass: a comparative approach

Sheetal Kumari
Smriti Agarwal
Manoj Chandra Garg
ResearchOpen Access23 Jan 2025
Scientific Reports

Volume: 15, P: 1-15
Results of a national UK physician reported survey of COVID-19 infection in patients with a myeloproliferative neoplasm

Richard A. Salisbury
Natalia Curto-Garcia
Andrew J. Innes
ResearchOpen Access12 Feb 2021
Leukemia

Volume: 35, P: 2424-2430
Genomic-enabled prediction models using multi-environment trials to estimate the effect of genotype × environment interaction on prediction accuracy in chickpea

Manish Roorkiwal
Diego Jarquin
Rajeev K. Varshney
ResearchOpen Access03 Aug 2018
Scientific Reports

Volume: 8, P: 1-11
Author Correction: GWAS and meta-analysis identifies 49 genetic variants underlying critical COVID-19

Erola Pairo-Castineira
Konrad Rawlik
J. Kenneth Baillie
Amendments and CorrectionsOpen Access11 Jul 2023
Nature

Volume: 619, P: E61
Light–matter interaction at atomic scales

The interaction of light with matter probed with a scanning tunnelling microscope reveals dynamics at atomic space-time scales. This Review discusses experimental schemes by which light–matter interaction is explored, taking advantage of light coupled into or extracted from the tunnel junction.

Rico Gutzler
Manish Garg
Klaus Kern
Reviews28 Apr 2021
Nature Reviews Physics

Volume: 3, P: 441-453
Genome-wide transcriptome and physiological analyses provide new insights into peanut drought response mechanisms

Sailaja Bhogireddy
Abishek Xavier
Rajeev K. Varshney
ResearchOpen Access05 Mar 2020
Scientific Reports

Volume: 10, P: 1-16
Author Correction: The proteome of Hypobaric Induced Hypoxic Lung: Insights from Temporal Proteomic Profiling for Biomarker Discovery

Yasmin Ahmad
Narendra K. Sharma
Kalpana Bhargava
Amendments and CorrectionsOpen Access01 Feb 2022
Scientific Reports

Volume: 12, P: 1-2
Semantic segmentation of PolSAR image data using advanced deep learning model

Rajat Garg
Anil Kumar
Shashi Kumar
ResearchOpen Access28 Jul 2021
Scientific Reports

Volume: 11, P: 1-18
Aspergillus flavus infection triggered immune responses and host-pathogen cross-talks in groundnut during in-vitro seed colonization

Spurthi N Nayak
Gaurav Agarwal
Rajeev K Varshney
ResearchOpen Access29 Aug 2017
Scientific Reports

Volume: 7, P: 1-14
micro-RNAs dependent regulation of DNMT and HIF1α gene expression in thrombotic disorders

Aatira Vijay
Prabhash Kumar Jha
Bhuvnesh Kumar
ResearchOpen Access20 Mar 2019
Scientific Reports

Volume: 9, P: 1-16
Prioritization of candidate genes in “QTL-hotspot” region for drought tolerance in chickpea (Cicer arietinum L.)

Sandip M Kale
Deepa Jaganathan
Rajeev K Varshney
ResearchOpen Access19 Oct 2015
Scientific Reports

Volume: 5, P: 1-14
The proteome of Hypobaric Induced Hypoxic Lung: Insights from Temporal Proteomic Profiling for Biomarker Discovery

Yasmin Ahmad
Narendra K. Sharma
Kalpana Bhargava
ResearchOpen Access29 May 2015
Scientific Reports

Volume: 5, P: 1-20

Search

Antibiotic contamination and antimicrobial resistance dynamics in the urban sewage microbiome in India

Breakdown of semiclassical description of thermoelectricity in near-magic angle twisted bilayer graphene

A second update on mapping the human genetic architecture of COVID-19

Cicer super-pangenome provides insights into species evolution and agronomic trait loci for crop improvement in chickpea

Visualizing hot carrier dynamics by nonlinear optical spectroscopy at the atomic length scale

Mapping the human genetic architecture of COVID-19

A genomic variation map provides insights into peanut diversity in China and associations with 28 agronomic traits

Large-scale phenotyping of patients with long COVID post-hospitalization reveals mechanistic subtypes of disease

GWAS and meta-analysis identifies 49 genetic variants underlying critical COVID-19

Selective excitation of vibrations in a single molecule

Author Correction: Cicer super-pangenome provides insights into species evolution and agronomic trait loci for crop improvement in chickpea

Real-time tracking of coherent oscillations of electrons in a nanodevice by photo-assisted tunnelling

The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication

Imaging and controlling coherent phonon wave packets in single graphene nanoribbons

A chickpea genetic variation map based on the sequencing of 3,366 genomes

Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits

Whole-genome sequencing reveals host factors underlying critical COVID-19

Author Correction: A chickpea genetic variation map based on the sequencing of 3,366 genomes

Comparative in-silico proteomic analysis discerns potential granuloma proteins of Yersinia pseudotuberculosis

An exploration of RSM, ANN, and ANFIS models for methylene blue dye adsorption using Oryza sativa straw biomass: a comparative approach

Results of a national UK physician reported survey of COVID-19 infection in patients with a myeloproliferative neoplasm

Genomic-enabled prediction models using multi-environment trials to estimate the effect of genotype × environment interaction on prediction accuracy in chickpea

Author Correction: GWAS and meta-analysis identifies 49 genetic variants underlying critical COVID-19

Light–matter interaction at atomic scales

Genome-wide transcriptome and physiological analyses provide new insights into peanut drought response mechanisms

Author Correction: The proteome of Hypobaric Induced Hypoxic Lung: Insights from Temporal Proteomic Profiling for Biomarker Discovery

Semantic segmentation of PolSAR image data using advanced deep learning model

Aspergillus flavus infection triggered immune responses and host-pathogen cross-talks in groundnut during in-vitro seed colonization

micro-RNAs dependent regulation of DNMT and HIF1α gene expression in thrombotic disorders

Prioritization of candidate genes in “QTL-hotspot” region for drought tolerance in chickpea (Cicer arietinum L.)

The proteome of Hypobaric Induced Hypoxic Lung: Insights from Temporal Proteomic Profiling for Biomarker Discovery

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