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Showing 1–50 of 145 results
Advanced filters: Author: Nathan D. Burke Clear advanced filters
  • Understanding how copper nanoparticles evolve under electrochemical conditions is crucial for the development of selective CO2 reduction electrocatalysts. Here the authors prepare well-defined nanocrystals and use advanced operando imaging and spectroscopic techniques to reveal the Cu–CO species-driven dynamic evolution of Cu electrodes.

    • Yao Yang
    • Julian Feijóo
    • Peidong Yang
    Research
    Nature Catalysis
    Volume: 8, P: 579-594
  • Qudits can encode a richer class of topologically ordered states, which are promising for quantum information, but experimental realizations have been limited to qubits. Here, the authors report a study of a qutrit toric code on a trapped-ion quantum computer.

    • Mohsin Iqbal
    • Anasuya Lyons
    • Henrik Dreyer
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-8
  • Interlayer hybridization in 2D van der Waals materials can change their properties. Here, it is shown that the coupling in CrSBr can be changed from switching the magnetic order from antiferromagnetic to ferromagnetic states.

    • Nathan P. Wilson
    • Kihong Lee
    • Xiaoyang Zhu
    Research
    Nature Materials
    Volume: 20, P: 1657-1662
  • The flagship paper of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Consortium describes the generation of the integrative analyses of 2,658 cancer whole genomes and their matching normal tissues across 38 tumour types, the structures for international data sharing and standardized analyses, and the main scientific findings from across the consortium studies.

    • Lauri A. Aaltonen
    • Federico Abascal
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 82-93
  • Strain can modify properties, but to prevent cracking is limited to films below a critical thickness. Here, by inserting atomic layers into a ferroelectric superlattice, chemical pressure is generated in thicker films, with enhanced figure of merit for tuneable millimetre-wave dielectrics.

    • Natalie M. Dawley
    • Eric J. Marksz
    • Darrell G. Schlom
    Research
    Nature Materials
    Volume: 19, P: 176-181
  • Halide perovskites display physical properties that are of both practical and fundamental interest. At high pressure, the low-temperature electrical transport in one such compound, CsPbI3, is now shown to be due to Cs-mediated electron-electron interactions resulting in Fermi-liquid-like behaviour.

    • Feng Ke
    • Jiejuan Yan
    • Yu Lin
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-8
  • Very early observations of a type Ia supernova—from within one hour of explosion—show a red colour that develops and rapidly disappears. These data provide information on the initial explosion mechanism: surface nuclear burning on the white dwarf or extreme mixing of the nuclear burning process.

    • Yuan Qi Ni
    • Dae-Sik Moon
    • Sheng Yang
    Research
    Nature Astronomy
    Volume: 6, P: 568-576
  • The authors present SVclone, a computational method for inferring the cancer cell fraction of structural variants from whole-genome sequencing data.

    • Marek Cmero
    • Ke Yuan
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-15
  • Whole-genome sequencing data for 2,778 cancer samples from 2,658 unique donors across 38 cancer types is used to reconstruct the evolutionary history of cancer, revealing that driver mutations can precede diagnosis by several years to decades.

    • Moritz Gerstung
    • Clemency Jolly
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 122-128
  • Quantum coherence and dephasing in molecular motions determine the behaviour of many chemical reactions and are the fundamental basis for the concept of coherent control. Now, ultrafast X-ray scattering combined with a detailed structural determination analysis precisely measures the coherent vibrational motions of a polyatomic organic molecule following photoexcitation.

    • Brian Stankus
    • Haiwang Yong
    • Peter M. Weber
    Research
    Nature Chemistry
    Volume: 11, P: 716-721
  • The catalytic activity of metals supported on oxides depends on charge and oxidation states, but charge transfer at the interface is not well understood. A model investigating the dynamic charges and oxidation states of Pt/CeO2 single-atom catalysts now clarifies the nature of the active site.

    • Nathan Daelman
    • Marçal Capdevila-Cortada
    • Núria López
    Research
    Nature Materials
    Volume: 18, P: 1215-1221
  • Transition metal carbides are attractive for electrochemical energy storage and catalysis, but cost effective preparation on a large scale is challenging. Here the authors use a direct pattern method to fabricate transition metal carbides for supercapacitors and solar energy harvesting for steam generation.

    • Xining Zang
    • Cuiying Jian
    • Liwei Lin
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-8
  • The active sites of metal-free carbon catalysts for the oxygen reduction reaction remain still elusive. Now, Yao, Dai and co-workers combine work-function analyses with macro/micro-electrochemical measurements on highly oriented pyrolytic graphite and conclude that pentagon defects are the main active sites for acidic oxygen reduction.

    • Yi Jia
    • Longzhou Zhang
    • Xiangdong Yao
    Research
    Nature Catalysis
    Volume: 2, P: 688-695
  • Analyses of 2,658 whole genomes across 38 types of cancer identify the contribution of non-coding point mutations and structural variants to driving cancer.

    • Esther Rheinbay
    • Morten Muhlig Nielsen
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 102-111
  • With the generation of large pan-cancer whole-exome and whole-genome sequencing projects, a question remains about how comparable these datasets are. Here, using The Cancer Genome Atlas samples analysed as part of the Pan-Cancer Analysis of Whole Genomes project, the authors explore the concordance of mutations called by whole exome sequencing and whole genome sequencing techniques.

    • Matthew H. Bailey
    • William U. Meyerson
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-27
  • Integrative analyses of transcriptome and whole-genome sequencing data for 1,188 tumours across 27 types of cancer are used to provide a comprehensive catalogue of RNA-level alterations in cancer.

    • Claudia Calabrese
    • Natalie R. Davidson
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 129-136
  • Viral pathogen load in cancer genomes is estimated through analysis of sequencing data from 2,656 tumors across 35 cancer types using multiple pathogen-detection pipelines, identifying viruses in 382 genomic and 68 transcriptome datasets.

    • Marc Zapatka
    • Ivan Borozan
    • Christian von Mering
    ResearchOpen Access
    Nature Genetics
    Volume: 52, P: 320-330
  • In somatic cells the mechanisms maintaining the chromosome ends are normally inactivated; however, cancer cells can re-activate these pathways to support continuous growth. Here, the authors characterize the telomeric landscapes across tumour types and identify genomic alterations associated with different telomere maintenance mechanisms.

    • Lina Sieverling
    • Chen Hong
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-13
  • Whole-genome sequencing data from more than 2,500 cancers of 38 tumour types reveal 16 signatures that can be used to classify somatic structural variants, highlighting the diversity of genomic rearrangements in cancer.

    • Yilong Li
    • Nicola D. Roberts
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 112-121
  • Analysis of cancer genome sequencing data has enabled the discovery of driver mutations. Here, as part of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium the authors present DriverPower, a software package that identifies coding and non-coding driver mutations within cancer whole genomes via consideration of mutational burden and functional impact evidence.

    • Shimin Shuai
    • Federico Abascal
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-12
  • Multi-omics datasets pose major challenges to data interpretation and hypothesis generation owing to their high-dimensional molecular profiles. Here, the authors develop ActivePathways method, which uses data fusion techniques for integrative pathway analysis of multi-omics data and candidate gene discovery.

    • Marta Paczkowska
    • Jonathan Barenboim
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-16
  • In this study the authors consider the structural variants (SVs) present within cancer cases of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium. They report hundreds of genes, including known cancer-associated genes for which the nearby presence of a SV breakpoint is associated with altered expression.

    • Yiqun Zhang
    • Fengju Chen
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-14
  • Understanding deregulation of biological pathways in cancer can provide insight into disease etiology and potential therapies. Here, as part of the PanCancer Analysis of Whole Genomes (PCAWG) consortium, the authors present pathway and network analysis of 2583 whole cancer genomes from 27 tumour types.

    • Matthew A. Reyna
    • David Haan
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-17
  • There’s an emerging body of evidence to show how biological sex impacts cancer incidence, treatment and underlying biology. Here, using a large pan-cancer dataset, the authors further highlight how sex differences shape the cancer genome.

    • Constance H. Li
    • Stephenie D. Prokopec
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-24
  • Some cancer patients first present with metastases where the location of the primary is unidentified; these are difficult to treat. In this study, using machine learning, the authors develop a method to determine the tissue of origin of a cancer based on whole sequencing data.

    • Wei Jiao
    • Gurnit Atwal
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-12
  • Many tumours exhibit hypoxia (low oxygen) and hypoxic tumours often respond poorly to therapy. Here, the authors quantify hypoxia in 1188 tumours from 27 cancer types, showing elevated hypoxia links to increased mutational load, directing evolutionary trajectories.

    • Vinayak Bhandari
    • Constance H. Li
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-10
  • The characterization of 4,645 whole-genome and 19,184 exome sequences, covering most types of cancer, identifies 81 single-base substitution, doublet-base substitution and small-insertion-and-deletion mutational signatures, providing a systematic overview of the mutational processes that contribute to cancer development.

    • Ludmil B. Alexandrov
    • Jaegil Kim
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 94-101
  • Cancers evolve as they progress under differing selective pressures. Here, as part of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium, the authors present the method TrackSig the estimates evolutionary trajectories of somatic mutational processes from single bulk tumour data.

    • Yulia Rubanova
    • Ruian Shi
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-12
  • Safely opening university campuses has been a major challenge during the COVID-19 pandemic. Here, the authors describe a program of public health measures employed at a university in the United States which, combined with other non-pharmaceutical interventions, allowed the university to stay open in fall 2020 with limited evidence of transmission.

    • Diana Rose E. Ranoa
    • Robin L. Holland
    • Martin D. Burke
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-16
  • One hundred and ten Zika virus genomes from ten countries and territories involved in the Zika virus epidemic reveal rapid expansion of the epidemic within Brazil and multiple introductions to other regions.

    • Hayden C. Metsky
    • Christian B. Matranga
    • Pardis C. Sabeti
    Research
    Nature
    Volume: 546, P: 411-415
  • Lagerpetids, bipedal archosaurs that are thought to be related to dinosaurs, are instead a sister group to pterosaurs, and although they have no obvious flight adaptations they share numerous synapomorphies with pterosaurs across the entire skeleton.

    • Martín D. Ezcurra
    • Sterling J. Nesbitt
    • Max C. Langer
    Research
    Nature
    Volume: 588, P: 445-449
  • The bicyclic azetidines, a class of potent, well-tolerated antimalarial compounds that is active against multiple stages of the Plasmodium life-cycle, has been discovered following screens against libraries of compounds reminiscent of natural products.

    • Nobutaka Kato
    • Eamon Comer
    • Stuart L. Schreiber
    Research
    Nature
    Volume: 538, P: 344-349
  • Advancements in satellite imagery and machine learning can be used to infer the causal impact of electricity access on livelihoods, providing a low-cost, generalizable approach to evaluating public policy in data-spare environments.

    • Nathan Ratledge
    • Gabe Cadamuro
    • Marshall Burke
    Research
    Nature
    Volume: 611, P: 491-495