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Showing 51–94 of 94 results

Advanced filters: Author: Nicolas L. Bray Clear advanced filters

Attosecond angular streaking and tunnelling time in atomic hydrogen

Simulation and measurement of the photoionization of atomic hydrogen at attosecond resolution confirm that the tunnelling of the ejected electron is instantaneous.

U. Satya Sainadh
Han Xu
I. V. Litvinyuk
Research18 Mar 2019
Nature

Volume: 568, P: 75-77
Ozone modified hypothalamic signaling enhancing thermogenesis in the TDP-43^A315T transgenic model of Amyotrophic Lateral Sclerosis

Sara Rodríguez-Sánchez
Nicolas Valiente
Carmen M. Fernández-Martos
ResearchOpen Access02 Dec 2022
Scientific Reports

Volume: 12, P: 1-14
Integrated multi-omics of the human gut microbiome in a case study of familial type 1 diabetes

Metagenomic, metatranscriptomic and metaproteomic approaches are used to resolve the taxonomic and functional characteristics of gastrointestinal microbiota from four families with multiple cases of type 1 diabetes mellitus.

Anna Heintz-Buschart
Patrick May
Paul Wilmes
ResearchOpen Access10 Oct 2016
Nature Microbiology

Volume: 2, P: 1-13
Honey compositional convergence and the parallel domestication of social bees

Pierre Noiset
Nathalie Cabirol
Nicolas J. Vereecken
ResearchOpen Access31 Oct 2022
Scientific Reports

Volume: 12, P: 1-6
Plant part and a steep environmental gradient predict plant microbial composition in a tropical watershed

Jared Bernard
Christopher B. Wall
Anthony S. Amend
Research13 Nov 2020
The ISME Journal

Volume: 15, P: 999-1009
Microbial community dynamics in blood, faeces and oral secretions of neotropical bats in Casanare, Colombia

Nicolas Luna
Luisa Páez-Triana
Juan David Ramirez
ResearchOpen Access28 Oct 2024
Scientific Reports

Volume: 14, P: 1-16
Differential analysis of RNA-seq incorporating quantification uncertainty

By using bootstraps that estimate inferential variance, the sleuth method and software provide fast and highly accurate differential gene expression analysis in an interactive Shiny app.

Harold Pimentel
Nicolas L Bray
Lior Pachter
Research05 Jun 2017
Nature Methods

Volume: 14, P: 687-690
Temporal response of belowground and aboveground organisms to microclimate changes in irrigated mediterranean vineyards

Emile Melloul
Marine Nicolas
Olivier Blight
ResearchOpen Access27 Aug 2025
Scientific Reports

Volume: 15, P: 1-12
Host species and temperature drive beech and Scots pine phyllosphere microbiota across European forests

Phyllosphere microbiota of beech and Scots pine at European continental scale is influenced by the host species and associated foliar traits, as well as by temperature and nitrogen deposition, according to 16S rRNA gene sequencing analyses on leaf epiphytic microbes.

Daniela Sangiorgio
Joan Cáliz
Rossella Guerrieri
ResearchOpen Access29 Nov 2024
Communications Earth & Environment

Volume: 5, P: 1-10
Taxonomic composition and seasonal dynamics of the air microbiome in West Siberia

Elena S. Gusareva
Nicolas P. E. Gaultier
Stephan C. Schuster
ResearchOpen Access09 Dec 2020
Scientific Reports

Volume: 10, P: 1-7
Gut bacteria of the cowpea beetle mediate its resistance to dichlorvos and susceptibility to Lippia adoensis essential oil

Mazarin Akami
Nicolas Yanou Njintang
Elias Nchiwan Nukenine
ResearchOpen Access23 Apr 2019
Scientific Reports

Volume: 9, P: 1-13
Genome sequence of the Brown Norway rat yields insights into mammalian evolution

Richard A. Gibbs
George M. Weinstock
Francis Collins
Research01 Apr 2004
Nature

Volume: 428, P: 493-521
Complex pectin metabolism by gut bacteria reveals novel catalytic functions

The hierarchical deconstruction of the complex pectic glycan rhamnogalacturonan-II by the human gut bacterium Bacteroides thetaiotaomicron reveals seven new families of glycoside hydrolases and three catalytic functions not previously observed.

Didier Ndeh
Artur Rogowski
Harry J. Gilbert
Research22 Mar 2017
Nature

Volume: 544, P: 65-70
Characterising and predicting cyanobacterial blooms in an 8-year amplicon sequencing time course

Nicolas Tromas
Nathalie Fortin
B Jesse Shapiro
Research19 May 2017
The ISME Journal

Volume: 11, P: 1746-1763
Environmental DNA reveals quantitative patterns of fish biodiversity in large rivers despite its downstream transportation

Didier Pont
Mathieu Rocle
Tony Dejean
ResearchOpen Access10 Jul 2018
Scientific Reports

Volume: 8, P: 1-13
Evaluating sediment and water sampling methods for the estimation of deep-sea biodiversity using environmental DNA

Miriam I. Brandt
Florence Pradillon
Daniela Zeppilli
ResearchOpen Access12 Apr 2021
Scientific Reports

Volume: 11, P: 1-14
Forest soil biotic communities show few responses to wood ash applications at multiple sites across Canada

Emily Smenderovac
Caroline Emilson
Lisa Venier
ResearchOpen Access09 Mar 2022
Scientific Reports

Volume: 12, P: 1-13
Relationship between feed efficiency and gut microbiota in laying chickens under contrasting feeding conditions

Maria Bernard
Alexandre Lecoeur
Tatiana Zerjal
ResearchOpen Access08 Apr 2024
Scientific Reports

Volume: 14, P: 1-14
The microbiomes of blowflies and houseflies as bacterial transmission reservoirs

Ana Carolina M. Junqueira
Aakrosh Ratan
Stephan C. Schuster
ResearchOpen Access24 Nov 2017
Scientific Reports

Volume: 7, P: 1-15
Nanoparticle delivery of Cas9 ribonucleoprotein and donor DNA in vivo induces homology-directed DNA repair

Gold nanoparticles carrying Cas9 ribonucleoprotein and donor DNA, and complexed with endosomal disruptive polymers, correct the DNA mutation that causes Duchenne muscular dystrophy in mice, with minimal off-target effects.

Kunwoo Lee
Michael Conboy
Niren Murthy
Research02 Oct 2017
Nature Biomedical Engineering

Volume: 1, P: 889-901
Tailoring the natural rare sugars D-tagatose and L-sorbose to produce novel functional carbohydrates

Oswaldo Hernandez-Hernandez
Carlos Sabater
F. Javier Moreno
ResearchOpen Access04 Oct 2024
npj Science of Food

Volume: 8, P: 1-13
Genetic deficiency of indoleamine 2,3-dioxygenase promotes gut microbiota-mediated metabolic health

Indoleamine 2,3-dioxygenase normally suppresses inflammation, but knockout of its gene is metabolically beneficial as its depletion reshapes the gut microbiota.

Ludivine Laurans
Nicolas Venteclef
Soraya Taleb
Research25 Jun 2018
Nature Medicine

Volume: 24, P: 1113-1120
Amendment with Burkina Faso phosphate rock-enriched composts alters soil chemical properties and microbial structure, and enhances sorghum agronomic performance

Adama Sagnon
Shinya Iwasaki
Papa Saliou Sarr
ResearchOpen Access17 Aug 2022
Scientific Reports

Volume: 12, P: 1-13
A reference gene catalogue of the pig gut microbiome

7.7 million non-redundant genes have been documented in the pig gut microbiome gene catalogue, revealing a 96% similarity in functional pathways to the human catalogue and influences from sex, age, host genetics and antibiotic treatments.

Liang Xiao
Jordi Estellé
Jun Wang
Research19 Sept 2016
Nature Microbiology

Volume: 1, P: 1-6
Biodegradation of weathered polystyrene films in seawater microcosms

Evdokia Syranidou
Katerina Karkanorachaki
Nicolas Kalogerakis
ResearchOpen Access21 Dec 2017
Scientific Reports

Volume: 7, P: 1-12
Environmental connectivity controls diversity in soil microbial communities

Manupriyam Dubey et al. use experimental systems with naturally derived soil microbiomes in liquid suspensions and encapsulated beads to compare community dynamics in well-connected and poorly connected environments. While their results show that microbial growth does not vary between conditions, they report that low connectivity led to reduced microbial diversity and suggest that these reductions in microbial diversity may be due to increased negative interspecific interactions.

Manupriyam Dubey
Noushin Hadadi
Jan R. van der Meer
ResearchOpen Access22 Apr 2021
Communications Biology

Volume: 4, P: 1-15
Retinitis pigmentosa is associated with shifts in the gut microbiome

Oksana Kutsyr
Lucía Maestre-Carballa
Pedro Lax
ResearchOpen Access23 Mar 2021
Scientific Reports

Volume: 11, P: 1-11
Author Correction: Discovery of stimulation-responsive immune enhancers with CRISPR activation

Dimitre R. Simeonov
Benjamin G. Gowen
Alexander Marson
Amendments and Corrections13 Jun 2018
Nature

Volume: 559, P: E13
Soil exchange rates of COS and CO¹⁸O differ with the diversity of microbial communities and their carbonic anhydrase enzymes

Laura K. Meredith
Jérôme Ogée
Paula V. Welander
ResearchOpen Access13 Sept 2018
The ISME Journal

Volume: 13, P: 290-300
Investigating the microbial ecology of coastal hotspots of marine nitrogen fixation in the western North Atlantic

Seaver Wang
Weiyi Tang
Nicolas Cassar
ResearchOpen Access09 Mar 2021
Scientific Reports

Volume: 11, P: 1-14
A high-resolution atlas of nucleosome occupancy in yeast

William Lee
Desiree Tillo
Corey Nislow
Research16 Sept 2007
Nature Genetics

Volume: 39, P: 1235-1244
Linking patterns of net community production and marine microbial community structure in the western North Atlantic

Seaver Wang
Yajuan Lin
Nicolas Cassar
Research22 Jun 2018
The ISME Journal

Volume: 12, P: 2582-2595
Influence of the vegan, vegetarian and omnivore diet on the oral health status in adults: a systematic review and meta-analysis

Luana Giò Azzola
Nicolas Fankhauser
Murali Srinivasan
Research09 Mar 2023
Evidence-Based Dentistry

Volume: 24, P: 43-44
Can hackathons unlock a new talent pool from the developing world?

Hackathons not only advance science itself but also help to educate young biotechnologists and artificial intelligence enthusiasts and to build capacity in digital biotechnology in low-income settings.

Timothy P. Jenkins
Nicolas Lopez Carranza
Andreas H. Laustsen
Comments & Opinion09 Aug 2022
Nature Biotechnology

Volume: 40, P: 1297-1298
Biofilm formation inhibition and dispersal of multi-species communities containing ammonia-oxidising bacteria

Pejhman Keshvardoust
Vanessa A. A. Huron
Scott A. Rice
ResearchOpen Access27 Aug 2019
npj Biofilms and Microbiomes

Volume: 5, P: 1-9
Ocean-wide comparisons of mesopelagic planktonic community structures

Janaina Rigonato
Marko Budinich
Olivier Jaillon
ResearchOpen Access18 Aug 2023
ISME Communications

Volume: 3, P: 1-11
Diel vertical migration into anoxic and high-pCO₂ waters: acoustic and net-based krill observations in the Humboldt Current

Ramiro Riquelme-Bugueño
Iván Pérez-Santos
Rubén Escribano
ResearchOpen Access14 Oct 2020
Scientific Reports

Volume: 10, P: 1-11
Discovery of stimulation-responsive immune enhancers with CRISPR activation

The authors use tiled CRISPR activation for functional enhancer discovery across two autoimmunity risk loci, CD69 and IL2RA, and identify elements with features of stimulus-responsive enhancers, including an IL2RA enhancer that harbours a fine-mapped autoimmunity risk variant.

Dimitre R. Simeonov
Benjamin G. Gowen
Alexander Marson
Research30 Aug 2017
Nature

Volume: 549, P: 111-115
Bacterial mock communities as standards for reproducible cytometric microbiome analysis

Flow cytometry is used to track dynamics in microbial communities and link these changes with ecological parameters. This protocol describes how to prepare a fixed microbial cytometric mock community to standardize results over large-scale studies.

Nicolas Cichocki
Thomas Hübschmann
Susann Müller
Protocols07 Aug 2020
Nature Protocols

Volume: 15, P: 2788-2812
DJ-1 (Park7) affects the gut microbiome, metabolites and the development of innate lymphoid cells (ILCs)

Yogesh Singh
Christoph Trautwein
Olaf Riess
ResearchOpen Access30 Sept 2020
Scientific Reports

Volume: 10, P: 1-19
Microbial transfers from permanent grassland ecosystems to milk in dairy farms in the Comté cheese area

N. Chemidlin Prévost-Bouré
B. Karimi
Y. Bouton
ResearchOpen Access13 Sept 2021
Scientific Reports

Volume: 11, P: 1-15
Chemosynthetic ectosymbionts associated with a shallow-water marine nematode

Laure Bellec
Marie-Anne Cambon Bonavita
Daniela Zeppilli
ResearchOpen Access07 May 2019
Scientific Reports

Volume: 9, P: 1-14
kallisto, bustools and kb-python for quantifying bulk, single-cell and single-nucleus RNA-seq

Kallisto, bustools and kb-python are a set of tools for quantifying bulk, single-cell and single-nucleus RNA-seq. Together, this set of free, open-source software tools can produce gene expression quantification from raw sequencing reads.

Delaney K. Sullivan
Kyung Hoi (Joseph) Min
Lior Pachter
Protocols10 Oct 2024
Nature Protocols

Volume: 20, P: 587-607
Quantitative and logic modelling of molecular and gene networks

The use of mathematical modelling to elucidate genetic, molecular and cellular processes is an integral part of systems biology. This Review presents the main methods to model and simulate molecular and gene networks (kinetic and logic modelling), describes their inherent advantages and limitations, and highlights recent developments that reveal the potential of hybrid approaches.

Nicolas Le Novère
Reviews03 Feb 2015
Nature Reviews Genetics

Volume: 16, P: 146-158

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