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Showing 101–150 of 385 results
Advanced filters: Author: Patrick M. Collins Clear advanced filters
  • The impact of the DART spacecraft on the asteroid Dimorphos is reported and reconstructed, demonstrating that kinetic impactor technology is a viable technique to potentially defend Earth from asteroids.

    • R. Terik Daly
    • Carolyn M. Ernst
    • Yun Zhang
    ResearchOpen Access
    Nature
    Volume: 616, P: 443-447
  • The Omicron variant evades vaccine-induced neutralization but also fails to form syncytia, shows reduced replication in human lung cells and preferentially uses a TMPRSS2-independent cell entry pathway, which may contribute to enhanced replication in cells of the upper airway. Altered fusion and cell entry characteristics are linked to distinct regions of the Omicron spike protein.

    • Brian J. Willett
    • Joe Grove
    • Emma C. Thomson
    ResearchOpen Access
    Nature Microbiology
    Volume: 7, P: 1161-1179
  • A cross-ancestry meta-analysis of genome-wide association studies identifies association signals for stroke and its subtypes at 89 (61 new) independent loci, reveals putative causal genes, highlighting F11, KLKB1, PROC, GP1BA, LAMC2 and VCAM1 as potential drug targets, and provides cross-ancestry integrative risk prediction.

    • Aniket Mishra
    • Rainer Malik
    • Stephanie Debette
    ResearchOpen Access
    Nature
    Volume: 611, P: 115-123
  • The Vertebrate Genome Project has used an optimized pipeline to generate high-quality genome assemblies for sixteen species (representing all major vertebrate classes), which have led to new biological insights.

    • Arang Rhie
    • Shane A. McCarthy
    • Erich D. Jarvis
    ResearchOpen Access
    Nature
    Volume: 592, P: 737-746
  • Current methods to estimate energy expenditure are either infeasible for everyday use or associated with significant errors. Here the authors present a Wearable System using inertial measurement units worn on the shank and thigh that estimates metabolic energy expenditure in real-time during common steady-state and time-varying activities.

    • Patrick Slade
    • Mykel J. Kochenderfer
    • Steven H. Collins
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-11
  • Mosaic chromosomal alterations (mCAs) in peripheral blood leukocytes are associated with an increased risk of malignancy. Here, the authors use genome-wide genotyping array data to investigate the prevalence of mCAs in sub-Saharan African children with versus those without Burkitt lymphoma.

    • Weiyin Zhou
    • Anja Fischer
    • Sam M. Mbulaiteye
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-13
  • Size and shape of the brain are, among others, influenced by the dimensions of the skull. Here, the authors report genome-wide association studies for head circumference and intracranial volume in children and adults and the identification of nine common or low-frequency variants associated with these traits.

    • Simon Haworth
    • Chin Yang Shapland
    • Beate St Pourcain
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-16
  • A strategy for inferring phase for rare variant pairs is applied to exome sequencing data for 125,748 individuals from the Genome Aggregation Database (gnomAD). This resource will aid interpretation of rare co-occurring variants in the context of recessive disease.

    • Michael H. Guo
    • Laurent C. Francioli
    • Kaitlin E. Samocha
    Research
    Nature Genetics
    Volume: 56, P: 152-161
  • Forecasts of COVID-19 mortality have been critical inputs into a range of policies, and decision-makers need information about their predictive performance. Here, the authors gather a panel of global epidemiological models and assess their predictive performance across time and space.

    • Joseph Friedman
    • Patrick Liu
    • Emmanuela Gakidou
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-13
  • A giant planet candidate roughly the size of Jupiter but more than 14 times as massive is observed by TESS and other instruments to be transiting the white dwarf star WD 1856+534.

    • Andrew Vanderburg
    • Saul A. Rappaport
    • Liang Yu
    Research
    Nature
    Volume: 585, P: 363-367
  • The authors report on a determination of the momentum transferred to an asteroid by kinetic impact, showing that the DART kinetic impact was highly effective in deflecting the asteroid Dimorphos.

    • Andrew F. Cheng
    • Harrison F. Agrusa
    • Giovanni Zanotti
    ResearchOpen Access
    Nature
    Volume: 616, P: 457-460
  • A study of the evolution of the SARS-CoV-2 virus in England between September 2020 and June 2021 finds that interventions capable of containing previous variants were insufficient to stop the more transmissible Alpha and Delta variants.

    • Harald S. Vöhringer
    • Theo Sanderson
    • Moritz Gerstung
    ResearchOpen Access
    Nature
    Volume: 600, P: 506-511
  • Here, the authors demonstrate that BRCA1-associated protein 1 (Bap1) regulates osteoclast’s capacity to degrade bone. Reprogramming of epigenetic-metabolic axis upon Bap1 loss inhibits bone degradation, preserving bone mass, making it a potential therapeutic target for osteoporosis.

    • Nidhi Rohatgi
    • Wei Zou
    • Steven L. Teitelbaum
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-16
  • Quantum digital signatures exploit quantum mechanics to provide verification of messages at the limits of information theory. Clarkeet al.demonstrate a photonic system that provides quantum digital signatures for messages sent to two receivers and is secure against forgery and repudiation.

    • Patrick J. Clarke
    • Robert J. Collins
    • Gerald S. Buller
    ResearchOpen Access
    Nature Communications
    Volume: 3, P: 1-8
  • Amphibians have seen large population declines, but the key drivers are hard to establish. Here, Miller et al. investigate trends of occupancy for 81 species of amphibians across North America and find greater sensitivity to water availability during breeding and winter conditions than mean climate.

    • David A. W. Miller
    • Evan H. Campbell Grant
    • Brent H. Sigafus
    ResearchOpen Access
    Nature Communications
    Volume: 9, P: 1-15
  • An examination of the receptor-binding properties of the H7N9 virus, which has recently emerged in China, shows that the virus has acquired the ability to bind the human α-2,6-linked sialic acid receptor while retaining binding to the avian α-2,3-linked receptor, and therefore does not have the preference for human versus avian receptors characteristic of pandemic viruses.

    • Xiaoli Xiong
    • Stephen R. Martin
    • Steven J. Gamblin
    Research
    Nature
    Volume: 499, P: 496-499
  • GEMIN5, an RNA-binding protein, is required for formation of small nuclear ribonucleoproteins. Here, the authors identify loss of function mutations in GEMIN5 that are associated with a human neurodevelopmental disorder.

    • Sukhleen Kour
    • Deepa S. Rajan
    • Udai Bhan Pandey
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-15
  • Andrew Futreal and colleagues report inactivating somatic mutations in the histone lysine demethylase gene UTX in human cancers, including multiple myelomas, esophageal squamous carcinomas, renal clear cell carcinomas, acute and chronic myeloid leukemias, breast and colorectal cancers and glioblastomas, identifying UTX as a new tumor suppressor gene.

    • Gijs van Haaften
    • Gillian L Dalgliesh
    • P Andrew Futreal
    Research
    Nature Genetics
    Volume: 41, P: 521-523
  • Available methods to identify species from fragmented archaeological bone and remains suffer a trade-off between cost and resolution. Here, the authors present a workflow that uses automated sample preparation, 10 to 20 times faster data acquisition, and computerized data interpretation to make the technology applicable to large-scale studies.

    • Patrick Leopold Rüther
    • Immanuel Mirnes Husic
    • Jesper Velgaard Olsen
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-14
  • Comprehensive integration of gene expression with epigenetic features is needed to understand the transition of kidney cells from health to injury. Here, the authors integrate dual single nucleus RNA expression and chromatin accessibility, DNA methylation, and histone modifications to decipher the chromatin landscape of the kidney in reference and adaptive injury cell states, identifying a transcription factor network of ELF3, KLF6, and KLF10 which regulates adaptive repair and maladaptive failed repair.

    • Debora L. Gisch
    • Michelle Brennan
    • Michael T. Eadon
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-21
  • Data from over 700,000 individuals reveal the identity of 83 sequence variants that affect human height, implicating new candidate genes and pathways as being involved in growth.

    • Eirini Marouli
    • Mariaelisa Graff
    • Guillaume Lettre
    Research
    Nature
    Volume: 542, P: 186-190
  • In hierarchical cosmological models, galaxies grow in mass through the continual accretion of smaller ones. The tidal disruption of these systems is expected to result in loosely bound and distant stars surrounding the galaxy. A panoramic survey of the Andromeda galaxy (M31) now reveals stars and coherent structures that are almost certainly remnants of dwarf galaxies destroyed by the tidal field of M31.

    • Alan W. McConnachie
    • Michael J. Irwin
    • Kimberly A. Venn
    Research
    Nature
    Volume: 461, P: 66-69
  • New mutations and genes associated with malformations of cortical development keep being identified, yet there is little known about the underlying cellular mechanisms controlling these impairments. Here, authors generate and characterize a heterozygous TUBG1 knock-in mouse model bearing one of these known mutations and show that TUBG1 mutation leads to the miss-positioning of neurons in the cortical wall due to migration, because of defective microtubules dynamics, and not proliferation defects during corticogenesis.

    • Ekaterina L. Ivanova
    • Johan G. Gilet
    • Maria-Victoria Hinckelmann
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-18
  • Tree mortality has been shown to be the dominant control on carbon storage in Amazon forests, but little is known of how and why Amazon forest trees die. Here the authors analyse a large Amazon-wide dataset, finding that fast-growing species face greater mortality risk, but that slower-growing individuals within a species are more likely to die, regardless of size.

    • Adriane Esquivel-Muelbert
    • Oliver L. Phillips
    • David Galbraith
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-11
  • A soil bacterial amplicon sequencing study using the Nanopore MinION platform suggests that common diagnostics are insufficient to detect irregular community results and recommends further diagnostics and the use of a reference soil as a mock community.

    • Daniel K. Manter
    • Catherine L. Reardon
    • David B. Knaebel
    ResearchOpen Access
    Communications Biology
    Volume: 7, P: 1-13
  • Building a ligand into a weak region of an electron density map of a protein is a subjective process. Here, the authors present a new method to obtain a clear electron density for a bound ligand based on multi-crystal experiments and 3D background correction.

    • Nicholas M. Pearce
    • Tobias Krojer
    • Frank von Delft
    ResearchOpen Access
    Nature Communications
    Volume: 8, P: 1-8
  • Nutrient manipulation of low-phosphorus soil in an old growth Amazon rainforest shows that phosphorus availability drives forest productivity and is likely to limit the response to increasing atmospheric CO2 concentrations.

    • Hellen Fernanda Viana Cunha
    • Kelly M. Andersen
    • Carlos Alberto Quesada
    Research
    Nature
    Volume: 608, P: 558-562
  • It is not clear how agricultural intensification affects spatially coupled ecosystems. Here, the authors use long-term datasets on managed grasslands coupled with unmanaged wetlands showing that grassland intensification affects ecosystem service multifunctionality of spatially coupled wetlands

    • Yuxi Guo
    • Elizabeth H. Boughton
    • Jiangxiao Qiu
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-15
  • Antiviral drugs are seen as essential requirements for control of initial influenza outbreaks caused by a new virus. This paper presents enzymatic properties and crystal structures of neuraminidase mutants from H5N1 infected patients that explain the molecular basis of observed resistance against the neuraminidase inhibitor Oseltamivir.

    • Patrick J. Collins
    • Lesley F. Haire
    • Steven J. Gamblin
    Research
    Nature
    Volume: 453, P: 1258-1261
  • Building on previous work that identified a mutant avian H5 virus that is transmissible between ferrets, the authors present an algorithm to predict virus avidity from the affinity of single haemagglutinin (HA)–receptor interactions; these studies predict that the mutant has a 200-fold preference for the human over the avian receptor, and crystal structures of the mutant HA in complex with human and avian receptors shed light on the molecular basis for these altered binding properties.

    • Xiaoli Xiong
    • Peter J. Coombs
    • Steven J. Gamblin
    Research
    Nature
    Volume: 497, P: 392-396
  • Exome sequence analysis of more than 5,000 schizophrenia cases and controls identifies a polygenic burden primarily arising from rare, disruptive mutations distributed across many genes, among which are those encoding voltage-gated calcium ion channels and the signalling complex formed by the ARC protein of the postsynaptic density; as in autism, mutations were also found in homologues of known targets of the fragile X mental retardation protein.

    • Shaun M. Purcell
    • Jennifer L. Moran
    • Pamela Sklar
    Research
    Nature
    Volume: 506, P: 185-190
  • Upstream open reading frames (uORFs), located in 5’ untranslated regions, are regulators of downstream protein translation. Here, Whiffin et al. use the genomes of 15,708 individuals in the Genome Aggregation Database (gnomAD) to systematically assess the deleteriousness of variants creating or disrupting uORFs.

    • Nicola Whiffin
    • Konrad J. Karczewski
    • James S. Ware
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-12
  • A novel variant annotation metric that quantifies the level of expression of genetic variants across tissues is validated in the Genome Aggregation Database (gnomAD) and is shown to improve rare variant interpretation.

    • Beryl B. Cummings
    • Konrad J. Karczewski
    • Daniel G. MacArthur
    ResearchOpen Access
    Nature
    Volume: 581, P: 452-458
  • Co-production includes diverse aims, terminologies and practices. This study explores such diversity by mapping differences in how 32 initiatives from 6 continents co-produce diverse outcomes for the sustainable development of ecosystems at local to global scales.

    • Josephine M. Chambers
    • Carina Wyborn
    • Tomas Pickering
    Research
    Nature Sustainability
    Volume: 4, P: 983-996
  • The next step after sequencing a genome is to figure out how the cell actually uses it as an instruction manual. A large international consortium has examined 1% of the genome for what part is transcribed, where proteins are bound, what the chromatin structure looks like, and how the sequence compares to that of other organisms.

    • Ewan Birney
    • John A. Stamatoyannopoulos
    • Pieter J. de Jong
    Research
    Nature
    Volume: 447, P: 799-816
  • Hakon Hakonarson and colleagues identify variants near TSLP at 5q22 associated with pediatric eosinophilic esophagitis. They further show that TSLP is overexpressed in esophageal biopsies of cases compared to controls and that the risk variants are associated with elevated TSLP expression.

    • Marc E Rothenberg
    • Jonathan M Spergel
    • Hakon Hakonarson
    Research
    Nature Genetics
    Volume: 42, P: 289-291
  • Multi-nucleotide variants (MNV) are genetic variants in close proximity of each other on the same haplotype whose functional impact is difficult to predict if they reside in the same codon. Here, Wang et al. use the gnomAD dataset to assemble a catalogue of MNVs and estimate their global mutation rate.

    • Qingbo Wang
    • Emma Pierce-Hoffman
    • Daniel G. MacArthur
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-13
  • This study uses single-cell expression profiling of pluripotent stem cells after various perturbations, and uncovers a high degree of variability that can be inherited through cell divisions—modulating microRNA or external signalling pathways induces a ground state with reduced gene expression heterogeneity and a distinct chromatin profile.

    • Roshan M. Kumar
    • Patrick Cahan
    • James J. Collins
    Research
    Nature
    Volume: 516, P: 56-61
  • The structure and receptor-binding characteristics are presented of the haemagglutinin (HA) from an avian H10N2 virus that closely resembles an isolate from recent human fatalities; although avian H10 has a marked preference for the avian receptor, it is already able to bind to the human receptor, and its structure in complex with the human receptor shows similarities to HA from pandemic H1 and H7 viruses.

    • Sebastien G. Vachieri
    • Xiaoli Xiong
    • John J. Skehel
    Research
    Nature
    Volume: 511, P: 475-477