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Showing 1–48 of 48 results
Advanced filters: Author: Phillip J. Stansfeld Clear advanced filters
  • The asymmetric distribution of lipopolysaccharide (LPS) on the surface of the bacterial outer membrane is essential and crucial for antibiotic resistance. Here, authors characterize the LPS translocon holo-complex, LptDEMY, uncovering conformational translocon state transitions that might explain how LPS is assembled at the outer membrane surface.

    • Haoxiang Chen
    • Axel Siroy
    • Raffaele Ieva
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-16
  • Researchers have resolved cryo-EM structures of the bacterial TamAB machinery in two distinct states: a non-hybrid and a novel hybrid barrel. These structures suggest each state enables a distinct function, facilitating outer membrane protein folding and phospholipid transport, respectively.

    • Biao Yang
    • Ruixin Fan
    • Changjiang Dong
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-15
  • Gram-negative bacteria use a multiprotein complex, LptB2FGC, to transport lipopolysaccharides (LPS) to the outer membrane. Here, Fiorentino et al. present cryo-EM structures of the complex from Pseudomonas aeruginosa, revealing species-specific features and providing insights into LPS transport mechanisms.

    • Francesco Fiorentino
    • Matteo Cervoni
    • Jani R. Bolla
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-14
  • Bacterial resistance to polymyxin antibiotics is conferred by enzymes such as phosphoethanolamine transferases, which add positively charged phosphoethanolamine to lipid A. Here, the authors present the structure of one such enzyme in its liganded form, and propose an enzymatic mechanism that may be generally applicable to other phosphoform transferases.

    • Allen P. Zinkle
    • Mariana Bunoro Batista
    • Filippo Mancia
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-15
  • The study reveals the structure of ArnC, a membrane glycosyltransferase that modifies undecaprenyl phosphate with aminoarabinose (L-Ara4N), leading to polymyxin resistance. The structure of ArnC in two states and MD simulations provide insights regarding the catalytic cycle of the enzyme.

    • Khuram U. Ashraf
    • Mariana Bunoro-Batista
    • Vasileios I. Petrou
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-17
  • Here, the authors present cryoEM structures of AftB, a key mycobacterial enzyme that adds terminal arabinose residues to the cell wall. In concert with functional assays and MD simulations, mechanistic insights are presented.

    • Yaqi Liu
    • Chelsea M. Brown
    • Filippo Mancia
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-16
  • Wzc is the master regulator of the biosynthesis and export of bacterial capsular polysaccharides and exopolysaccharides. Here, the authors report cryoEM structures of intermediate states and provide insights into phosphorylation and transmembrane signalling.

    • Yun Yang
    • Mariana Batista
    • Jiwei Liu
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-13
  • Here the authors investigate of the structural basis of substrate recognition and the catalytic mechanism of the mannosyltransferase PimE, which is crucial for the biosynthesis of phosphatidyl-myo-inositol mannosides (PIMs) in Mycobacterium tuberculosis.

    • Yaqi Liu
    • Chelsea M. Brown
    • Filippo Mancia
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-17
  • This study reveals that an outer membrane protein from the predator Bdellovibrio bacteriovorus forms a pentameric assembly that traps a lipid monolayer within. This allows the discovery of two superfamilies, distributed across a wide range of bacteria, likely to adopt a similar architecture.

    • Rebecca J. Parr
    • Yoann G. Santin
    • Andrew L. Lovering
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-14
  • Native mass spectrometry, HDX-MS and MD simulations define the mechanism for how LPS binding to the Gram-negative outer membrane complex LptDE opens the LptD lateral exit gate and how thanatin impairs transport across the periplasm.

    • Francesco Fiorentino
    • Joshua B. Sauer
    • Carol V. Robinson
    Research
    Nature Chemical Biology
    Volume: 17, P: 187-195
  • Bacterial cell shape is dependent on the formation of the extracellular sugar polymer called peptidoglycan. Here the authors describe RodA-PBP2, the enzymatic core of the elongasome, which is the complex responsible peptidoglycan synthesis, and utilize an integrated approach to investigate the mechanism of peptidoglycan biosynthesis.

    • Rie Nygaard
    • Chris L. B. Graham
    • Filippo Mancia
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-15
  • Bacterial O antigen polysaccharides play a role in innate immune response evasion. Here, the authors uncover the ATP-bound structure of the Aquifex aeolicus WzmWzt O antigen ABC transporter, shedding light onto the mechanism of lipid-linked polysaccharide translocation.

    • Christopher A. Caffalette
    • Robin A. Corey
    • Jochen Zimmer
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-11
  • TMEM16K is a member of the TMEM16 family of integral membrane proteins that are either lipid scramblases or chloride channels. Here the authors combine cell biology, electrophysiology measurements, X-ray crystallography, cryo-EM and MD simulations to structurally characterize TMEM16K and show that it is an ER-resident lipid scramblase.

    • Simon R. Bushell
    • Ashley C. W. Pike
    • Elisabeth P. Carpenter
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-16
  • Cryo-electron microscopy structures of the bacterial O-antigen ligase WaaL, combined with genetics, biochemistry and molecular dynamics simulations, provide insight into the mechanism by which WaaL catalyses the biosynthesis of lipopolysaccharide.

    • Khuram U. Ashraf
    • Rie Nygaard
    • Filippo Mancia
    Research
    Nature
    Volume: 604, P: 371-376
  • In eukaryotes the SLC35 family of solute carriers mediate the selective uptake of nucleotide sugars from the cytoplasm into the Endoplasmic Reticulum or Golgi. Here authors report the crystal structure of the yeast GDP-mannose transporter, Vrg4, bound to guanine monophosphate (GMP) revealing the molecular basis for GMP recognition and transport.

    • Joanne L. Parker
    • Robin A. Corey
    • Simon Newstead
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-10
  • Two crystal structures of the Escherichia coli β-barrel assembly machinery (BAM complex) are presented, one of which includes all five subunits (BamA–BamE), in two distinct conformational states; together with functional assays and molecular dynamics stimulations, these structures help to generate a model for outer membrane protein insertion.

    • Yinghong Gu
    • Huanyu Li
    • Changjiang Dong
    Research
    Nature
    Volume: 531, P: 64-69
  • KdpFABC is a high-affinity bacterial K+ pump which combines the ion channel-like KdpA and the P-type ATPase KdpB. Here, the authors elucidate the mechanisms underlying transport and the coupling to ATP hydrolysis, and provide evidence that ions are transported via an intersubunit tunnel through KdpA and KdpB.

    • Jakob M. Silberberg
    • Robin A. Corey
    • Inga Hänelt
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-12
  • Here, the authors identify a third component of the outer membrane LPS translocon in Escherichia coli called LptM. Biochemical analysis and structural modelling reveal that LptM binds the LPS translocon by mimicking its native substrate, so stabilising an active conformation of the complex.

    • Yiying Yang
    • Haoxiang Chen
    • Raffaele Ieva
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-15
  • Phospholipid scramblase 1 (PLSCR1), a protein induced by IFNγ, acts as a defence factor against SARS-CoV-2 and other coronaviruses by inhibiting the fusion of the virus with host-cell membranes.

    • Dijin Xu
    • Weiqian Jiang
    • John D. MacMicking
    ResearchOpen Access
    Nature
    Volume: 619, P: 819-827
  • Bacterial cell wall enzymes and their precursors are critical targets for antibiotic development. Here, the authors investigate several biosynthetic enzymes with their substrates and show that the passage of substrates and products in the pathway is controlled by their relative binding affinities.

    • Abraham O. Oluwole
    • Robin A. Corey
    • Carol V. Robinson
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-12
  • CD59 protects human cells from damage by the MAC immune pore. The authors show how CD59 inhibits MAC, by deflecting pore-forming β-hairpins of complement proteins. As well as how the membrane environment influences the role of CD59 in complement regulation and in host-pathogen interactions.

    • Emma C. Couves
    • Scott Gardner
    • Doryen Bubeck
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-13
  • A cryo-electron microscopy analysis reveals how HAS selects its substrates, hydrolyses the first substrate to prime the synthesis reaction, opens a hyaluronan-conducting transmembrane channel, ensures alternating substrate polymerization and coordinates hyaluronan inside its transmembrane pore.

    • Finn P. Maloney
    • Jeremi Kuklewicz
    • Jochen Zimmer
    Research
    Nature
    Volume: 604, P: 195-201
  • The twin-arginine translocation (Tat) pathway transports folded proteins across membranes in bacteria and plant chloroplasts; the crystal structure of TatC, an integral membrane protein and core component of this complex, is now presented.

    • Sarah E. Rollauer
    • Michael J. Tarry
    • Susan M. Lea
    Research
    Nature
    Volume: 492, P: 210-214
  • KUP transporters facilitate potassium uptake by the co-transport of protons and are key players in potassium homeostasis. Here authors identify the potassium importer KimA from Bacillus subtilis as a new member of the KUP transporter family and show the cryo-EM structure of KimA in an inward-occluded, trans-inhibited conformation.

    • Igor Tascón
    • Joana S. Sousa
    • Inga Hänelt
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-10
  • Lipid droplet biogenesis is orchestrated by the conserved membrane protein Seipin via an unknown mechanism. Here, the authors use structural, biochemical and molecular dynamics simulation approaches to reveal the mechanism of lipid droplet formation by the yeast Seipin Sei1 and its partner Ldb16.

    • Yoel A. Klug
    • Justin C. Deme
    • Pedro Carvalho
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-13
  • Motile bacteria sense chemical gradients with transmembrane receptors organised in supramolecular signalling arrays. Here authors introduce an E. coli strain that forms small minicells possessing extended and highly ordered chemosensory arrays that are visualized by cryo-electron tomography.

    • Alister Burt
    • C. Keith Cassidy
    • Irina Gutsche
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-9
  • Diacylglycerol kinase is a small bacterial membrane-bound trimer that catalyses diacylglycerol conversion to phosphatidic acid. Here, the authors solve the crystal structure of the kinase bound to a lipid substrate and an ATP analogue, and show that the active site arose through convergent evolution.

    • Dianfan Li
    • Phillip J. Stansfeld
    • Martin Caffrey
    ResearchOpen Access
    Nature Communications
    Volume: 6, P: 1-12
  • Lipopolysaccharide, an essential component of the outer membranes of Gram-negative bacteria, is inserted by LptD–LptE, a protein complex with a unique ‘barrel and plug’ architecture; the structure, molecular dynamics simulations and functional assays of the LptD–LptE complex of Salmonella typhimurium suggest that lipopolysaccharide may pass through the barrel and is then inserted into the outer leaflet of the outer membrane through a lateral opening between two β-strands of LptD.

    • Haohao Dong
    • Quanju Xiang
    • Changjiang Dong
    Research
    Nature
    Volume: 511, P: 52-56
  • Lipoproteins are essential components of bacterial membranes. Here the authors present the crystal structures ofPseudomonas aeruginosa and Escherichia coliapolipoprotein N-acyltransferase, which catalyses the final step in the lipoprotein synthesis pathway, and give insights into its mechanism.

    • Maciej Wiktor
    • Dietmar Weichert
    • Martin Caffrey
    ResearchOpen Access
    Nature Communications
    Volume: 8, P: 1-13
  • Bacterial cell wall components are assembled in a transmembrane cycle that involves the membrane integral pyrophosphorylase, BacA. Here the authors solve the crystal structure of BacA which shows an interdigitated inverted topology repeat that hints towards a flippase function for BacA.

    • Meriem El Ghachi
    • Nicole Howe
    • Martin Caffrey
    ResearchOpen Access
    Nature Communications
    Volume: 9, P: 1-13
  • Protein-lipid interactions can mediate the function of membrane proteins. Here coarse-grained molecular dynamics free energy perturbation simulations yield binding free energies for phosphoinositide lipids to hKir channels and mutants, in agreement with electrophysiological measurements.

    • Tanadet Pipatpolkai
    • Robin A. Corey
    • Phillip J. Stansfeld
    ResearchOpen Access
    Communications Chemistry
    Volume: 3, P: 1-10
  • Gain-of-function mutations in the genes encoding ATP-sensitive potassium channel (KATP channel) subunits cause neonatal diabetes mellitus. This Review discusses the mechanism of action of mutations that lead to neonatal diabetes mellitus and briefly reviews work on the management of this disease.

    • Tanadet Pipatpolkai
    • Samuel Usher
    • Frances M. Ashcroft
    Reviews
    Nature Reviews Endocrinology
    Volume: 16, P: 378-393
  • C. Keith Cassidy et al. use cryo-electron tomography and subtomogram averaging to examine the structure of the core-signalling units of E. coli chemotaxis arrays at subnanometer resolution. They find multiple distinct conformations of the critical CheA kinase domain, offering new insights into CheA signalling.

    • C. Keith Cassidy
    • Benjamin A. Himes
    • Peijun Zhang
    ResearchOpen Access
    Communications Biology
    Volume: 3, P: 1-10