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Showing 101–150 of 433 results
Advanced filters: Author: Russell Simon Clear advanced filters
  • Major histocompatibility complex (MHC) loss of heterozygosity, allele-specific mutation and measurement of expression and repression (MHC Hammer) detects disruption to human leukocyte antigens due to mutations, loss of heterogeneity, altered gene expression or alternative splicing. Applied to lung and breast cancer datasets, the tool shows that these aberrations are common across cancer and can have clinical implications.

    • Clare Puttick
    • Thomas P. Jones
    • Nicholas McGranahan
    ResearchOpen Access
    Nature Genetics
    Volume: 56, P: 2121-2131
  • In this study, Aggarwal and colleagues perform prospective sequencing of SARS-CoV-2 isolates derived from asymptomatic student screening and symptomatic testing of students and staff at the University of Cambridge. They identify important factors that contributed to within university transmission and onward spread into the wider community.

    • Dinesh Aggarwal
    • Ben Warne
    • Ian G. Goodfellow
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-16
  • Individuals with Chuvash polycythemia have an increased red blood cell count and are prone to developing blood clots. Although mutations affecting the VHL protein are known to be causative, the underlying molecular mechanisms have been unclear. Ryan C Russell et al. now show that VHL targets the key signaling molecule JAK2 for degradation by forming a complex with the SOCS1 protein. The authors also show that JAK2 inhibition has beneficial effects in a mouse model of this disease, pointing to a new therapeutic strategy.

    • Ryan C Russell
    • Roxana I Sufan
    • Michael Ohh
    Research
    Nature Medicine
    Volume: 17, P: 845-853
  • A multiproxy record of Gigantopithecus blacki provides insights into the ecological context of this species, which became extinct around 250,000 years ago, when increased seasonality led to a change in forest cover.

    • Yingqi Zhang
    • Kira E. Westaway
    • Renaud Joannes-Boyau
    ResearchOpen Access
    Nature
    Volume: 625, P: 535-539
  • Adult forms of inflammatory bowel disease (IBD) are of a polygenic nature, but paediatric and very early onset (VEO) IBD also occur as monogenic forms. Here, using whole exome sequencing, the authors explore both the monogenic and polygenic contribution to VEO-IBD and characterize a rare somatic mosaic VEO-IBD patient.

    • Eva Gonçalves Serra
    • Tobias Schwerd
    • Carl A. Anderson
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-15
  • The structure of a neutralizing human monoclonal antibody isolated from an individual immunized in a Plasmodium vivax Duffy binding protein vaccine clinical trial, in complex with its target, elucidates the mechanism by which parasite invasion of immature red blood cells is inhibited.

    • Thomas. A. Rawlinson
    • Natalie M. Barber
    • Simon J. Draper
    Research
    Nature Microbiology
    Volume: 4, P: 1497-1507
  • The InSight lander has expanded our knowledge of the atmosphere of Mars by observing various phenomena, including airglow, bores, infrasound and Earth-like turbulence.

    • Don Banfield
    • Aymeric Spiga
    • W. Bruce Banerdt
    Research
    Nature Geoscience
    Volume: 13, P: 190-198
  • Immune lymphocyte estimation from nucleotide sequencing (ImmuneLENS) infers B cell and T cell fractions from whole-genome sequencing data. Applied to the 100,000 Genomes Project datasets, circulating T cell fraction provides sex-dependent and prognostic insights in patients.

    • Robert Bentham
    • Thomas P. Jones
    • Nicholas McGranahan
    ResearchOpen Access
    Nature Genetics
    Volume: 57, P: 694-705
  • Relatives of patients with amyotrophic lateral sclerosis have an unexpectedly high incidence of schizophrenia. Here, the authors show a genetic link between the two conditions, suggesting shared neurobiological mechanisms.

    • Russell L. McLaughlin
    • Dick Schijven
    • Michael C. O’Donovan
    ResearchOpen Access
    Nature Communications
    Volume: 8, P: 1-12
  • Integrative analysis of copy number and gene expression in 2,000 primary breast tumours with long-term clinical follow-up revealed putative cis-acting driver genes, novel subgroups and trans-acting aberration hotspots that modulate subgroup-specific gene networks.

    • Christina Curtis
    • Sohrab P. Shah
    • Samuel Aparicio
    Research
    Nature
    Volume: 486, P: 346-352
  • In this immunological ancillary study of the PREVAC trial, the authors show that approved Ebola virus vaccines induce memory T-cell responses that persist during the five year follow-up after initial vaccination.

    • Aurélie Wiedemann
    • Edouard Lhomme
    • Huanying Zhou
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-15
  • Metal–organic frameworks have demonstrated promise for the storage and release of biologically active gases. Here, an in situ single crystal X-ray diffraction study using synchrotron radiation elucidates the binding mechanisms and geometries of nitric oxide and carbon monoxide gases in activated frameworks Ni-CPO-27 and Co-4,6-dihydroxyisophthalate.

    • Russell M. Main
    • Simon M. Vornholt
    • Russell E. Morris
    ResearchOpen Access
    Communications Chemistry
    Volume: 6, P: 1-7
  • In a GWAS study of 32,438 adults, the authors discovered five novel loci for intracranial volume and confirmed two known signals. Variants for intracranial volume were also related to childhood and adult cognitive function and to Parkinson's disease, and enriched near genes involved in growth pathways, including PI3K-AKT signaling.

    • Hieab H H Adams
    • Derrek P Hibar
    • Paul M Thompson
    Research
    Nature Neuroscience
    Volume: 19, P: 1569-1582
  • Random mutagenesis can uncover novel genes involved in phenotypic traits. Here the authors perform a large-scale phenotypic screen on over 100 mouse strains generated by ENU mutagenesis to identify mice with age-related diseases, which they attribute to specific mutations revealed by whole-genome sequencing.

    • Paul K. Potter
    • Michael R. Bowl
    • Steve D. M. Brown
    ResearchOpen Access
    Nature Communications
    Volume: 7, P: 1-13
  • Gilean McVean and colleagues report the results of a large-scale clinical genome sequencing project spanning a broad spectrum of disorders. They identify factors influencing successful genetic diagnosis and highlight the challenges of interpreting findings for genetically heterogeneous disorders.

    • Jenny C Taylor
    • Hilary C Martin
    • Gilean McVean
    Research
    Nature Genetics
    Volume: 47, P: 717-726
  • PAPP-A substrate selectivity underlies the tight regulation of IGF signaling. Here, the authors report cryo-EM structures of dimeric PAPP-A in its substrate-free form and in complex with a peptide substrate, which combined with biochemical assays provide a mechanism for PAPP-A substrate binding and selectivity.

    • Russell A. Judge
    • Janani Sridar
    • Qi Hao
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-13
  • A large study of impulsivity in 14-year-olds finds that substance use and ADHD symptoms are associated with different brain networks that inhibit motor responses. Genetic analysis implicates the noradrenergic system in activity levels in one of these networks, which is centered on the right frontal cortex.

    • Sarah M Helfinstein
    • Russell A Poldrack
    News & Views
    Nature Neuroscience
    Volume: 15, P: 803-805
  • This report from the 1000 Genomes Project describes the genomes of 1,092 individuals from 14 human populations, providing a resource for common and low-frequency variant analysis in individuals from diverse populations; hundreds of rare non-coding variants at conserved sites, such as motif-disrupting changes in transcription-factor-binding sites, can be found in each individual.

    • Gil A. McVean
    • David M. Altshuler (Co-Chair)
    • Gil A. McVean
    ResearchOpen Access
    Nature
    Volume: 491, P: 56-65
  • Stable angina pectoris is a major contributor to disability in patients with coronary artery disease. Accurate identification of the extent and distribution of stable angina pectoris could vastly improve management and secondary prevention of underlying coronary artery disease. This Review assesses the strengths and limitations of contemporary methods for detection.

    • Mary Russell
    • Marie Williams
    • Simon Stewart
    Reviews
    Nature Reviews Cardiology
    Volume: 7, P: 106-113
  • Patient-derived xenografts are important tools for cancer drug development. Here, the authors develop models from 22 non-small cell lung cancer patients. They show genomic differences between models created from different spatial regions of tumours and a bottleneck on model establishment.

    • Robert E. Hynds
    • Ariana Huebner
    • Charles Swanton
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-21
  • Hominins colonized Eurasia fairly swiftly after they left Africa around 1.75 million years ago, although it had been thought that they did not penetrate beyond 45° N except in very warm intervals. Now, however, artefacts, fauna and flora dating back more 0.78 million years have been found in a river deposit in Norfolk, England. The findings show that humans were capable of penetrating northern Europe in cooler intervals, and will prompt a re-evaluation of the adaptations and abilities of humans at this early date.

    • Simon A. Parfitt
    • Nick M. Ashton
    • Chris B. Stringer
    Research
    Nature
    Volume: 466, P: 229-233
  • In the phase 2 HUDSON study, patients with advanced non-small-cell lung cancer received anti-PD-L1 combined with biomarker-guided therapy targeting ATR kinase, PARP, STAT3 or CD73, leading to encouraging clinical benefit in response to combination of the ATR kinase inhibitor ceralasertib with durvalumab.

    • Benjamin Besse
    • Elvire Pons-Tostivint
    • John V. Heymach
    ResearchOpen Access
    Nature Medicine
    Volume: 30, P: 716-729
  • In atomic solids, substitutional doping is a powerful approach to modulating materials properties. Now, three substitutional mixtures of {Co6Se8} and {Cr6Te8} clusters in a crystal lattice with C60 fullerenes have been prepared. At two Co:Cr mixing ratios, the solid solutions showed particularly high electrical conductivities and low activation barriers for electron transport, owing to their structural heterogeneity.

    • Jingjing Yang
    • Jake C. Russell
    • Colin Nuckolls
    Research
    Nature Chemistry
    Volume: 13, P: 607-613
  • A cross-ancestry genome-wide association meta-analysis of amyotrophic lateral sclerosis (ALS) including 29,612 patients with ALS and 122,656 controls identifies 15 risk loci with distinct genetic architectures and neuron-specific biology.

    • Wouter van Rheenen
    • Rick A. A. van der Spek
    • Jan H. Veldink
    ResearchOpen Access
    Nature Genetics
    Volume: 53, P: 1636-1648
  • The species threat abatement and restoration (STAR) metric quantifies the contributions that abating threats and restoring habitats offer towards reducing species’ extinction risk in specific places.

    • Louise Mair
    • Leon A. Bennun
    • Philip J. K. McGowan
    Research
    Nature Ecology & Evolution
    Volume: 5, P: 836-844
  • Structural classification of mutations in the epidermal growth factor receptor causing non-small cell lung cancer is a better predictor of patient outcomes following drug treatment than traditional exon-based classification.

    • Jacqulyne P. Robichaux
    • Xiuning Le
    • John V. Heymach
    ResearchOpen Access
    Nature
    Volume: 597, P: 732-737
  • Although Huntington’s disease (HD) is a well-studied genetic disorder, less is known about the epigenetic changes underlying it. Here, the authors characterize DNA methylation levels in tissues from patients, a mouse huntingtin (Htt) gene knock-in model, and a transgenic HTT sheep model, and provide evidence that HD is accompanied by DNA methylation changes in these three species.

    • Ake T. Lu
    • Pritika Narayan
    • Steve Horvath
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-15
  • COVID-19-related travel restrictions were imposed in China around the same time as major annual holiday migrations, with unknown combined impacts on mobility patterns. Here, the authors show that restructuring of the travel network in response to restrictions was temporary, whilst holiday-related travel increased pressure on healthcare services with lower capacity.

    • Hamish Gibbs
    • Yang Liu
    • Rosalind M. Eggo
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-9
  • A reference genome sequence for threespine sticklebacks, and re-sequencing of 20 additional world-wide populations, reveals loci used repeatedly during vertebrate evolution; multiple chromosome inversions contribute to marine-freshwater divergence, and regulatory variants predominate over coding variants in this classic example of adaptive evolution in natural environments.

    • Felicity C. Jones
    • Manfred G. Grabherr
    • David M. Kingsley
    ResearchOpen Access
    Nature
    Volume: 484, P: 55-61
  • Despite the identification of genetic risk loci for late-onset Alzheimer’s disease (LOAD), the genetic architecture and prediction remains unclear. Here, the authors use genetic risk scores for prediction of LOAD across three datasets and show evidence suggesting oligogenic variant architecture for this disease.

    • Qian Zhang
    • Julia Sidorenko
    • Peter M. Visscher
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-11
  • Sexual dimorphism in genetic vulnerability to schizophrenia, systemic lupus erythematosus and Sjögren’s syndrome is linked to differential protein abundance from alleles of complement component 4.

    • Nolan Kamitaki
    • Aswin Sekar
    • Steven A. McCarroll
    Research
    Nature
    Volume: 582, P: 577-581
  • Entanglement was observed in top–antitop quark events by the ATLAS experiment produced at the Large Hadron Collider at CERN using a proton–proton collision dataset with a centre-of-mass energy of √s  = 13 TeV and an integrated luminosity of 140 fb−1.

    • G. Aad
    • B. Abbott
    • L. Zwalinski
    ResearchOpen Access
    Nature
    Volume: 633, P: 542-547
  • Cross-correlation analysis of high-resolution spectra obtained as the exoplanet KELT-9b transited its host star reveals neutral and singly ionized atomic iron and singly ionized atomic titanium in the exoplanet’s atmosphere.

    • H. Jens Hoeijmakers
    • David Ehrenreich
    • Luca Di Fabrizio
    Research
    Nature
    Volume: 560, P: 453-455
  • A case–control study investigating the causes of recent cases of acute hepatitis of unknown aetiology in 32 children identifies an association between adeno-associated virus infection and host genetics in disease susceptibility.

    • Antonia Ho
    • Richard Orton
    • Emma C. Thomson
    Research
    Nature
    Volume: 617, P: 555-563
  • Results of the TRACERx study shed new light into the association between body composition and body weight with survival in individuals with non-small cell lung cancer, and delineate potential biological processes and mediators contributing to the development of cancer-associated cachexia.

    • Othman Al-Sawaf
    • Jakob Weiss
    • Charles Swanton
    Research
    Nature Medicine
    Volume: 29, P: 846-858
  • Results for the final phase of the 1000 Genomes Project are presented including whole-genome sequencing, targeted exome sequencing, and genotyping on high-density SNP arrays for 2,504 individuals across 26 populations, providing a global reference data set to support biomedical genetics.

    • Adam Auton
    • Gonçalo R. Abecasis
    • Gonçalo R. Abecasis
    ResearchOpen Access
    Nature
    Volume: 526, P: 68-74
  • 1000 Genomes imputation can increase the power of genome-wide association studies to detect genetic variants associated with human traits and diseases. Here, the authors develop a method to integrate and analyse low-coverage sequence data and SNP array data, and show that it improves imputation performance.

    • Olivier Delaneau
    • Jonathan Marchini
    • Leena Peltonenz
    Research
    Nature Communications
    Volume: 5, P: 1-9