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Showing 1–50 of 53 results
Advanced filters: Author: Stefan Jakobs Clear advanced filters
  • Stoldt, Maass, and colleagues present a study where smFISH is combined with STED and MINFLUX microscopy to map mitochondrial mRNA at nanometre resolution, enabling the exploration of the structural folding and distribution of mRNAs within mitochondria.

    • Stefan Stoldt
    • Frederike Maass
    • Stefan Jakobs
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-11
  • Identifying jets originating from heavy quarks plays a fundamental role in hadronic collider experiments. In this work, the ATLAS Collaboration describes and tests a transformer-based neural network architecture for jet flavour tagging based on low-level input and physics-inspired constraints.

    • G. Aad
    • E. Aakvaag
    • L. Zwalinski
    ResearchOpen Access
    Nature Communications
    Volume: 17, P: 1-22
  • A stimulated-emission-depletion-based fluorescence localization and super-resolution microscopy concept that is capable of attaining a spatial resolution down at the size scale of the fluorophores themselves and a localization precision of 1–3 nm in standard deviation is reported.

    • Michael Weber
    • Marcel Leutenegger
    • Stefan W. Hell
    ResearchOpen Access
    Nature Photonics
    Volume: 15, P: 361-366
  • Super-resolution optical fluctuation imaging provides 3D images of biological specimens via blinking fluorophores. Geissbuehler et al. present a multiplexed version of this method that captures images at multiple focal planes simultaneously, reducing the acquisition time compared with standard approaches.

    • Stefan Geissbuehler
    • Azat Sharipov
    • Marcel Leutenegger
    ResearchOpen Access
    Nature Communications
    Volume: 5, P: 1-7
  • Stimulated emission depletion (STED) microscopy allows images to be captured at a subdiffraction resolution. Here optimal transport colocalization is proposed for analyzing macromolecule distributions in high-resolution STED images.

    • Carla Tameling
    • Stefan Stoldt
    • Axel Munk
    Research
    Nature Computational Science
    Volume: 1, P: 199-211
  • Super-resolution microscopy using wavelengths in the near infrared (NIR) optical window is particularly appealing for live cell and tissue imaging, yet largely unexplored. Here the authors present NIR-STED nanoscopy of living mammalian cells using the new bacteriophytochrome-based fluorescent protein SNIFP.

    • Maria Kamper
    • Haisen Ta
    • Stefan Jakobs
    ResearchOpen Access
    Nature Communications
    Volume: 9, P: 1-7
  • Lange, Ratz, et al. investigate the number and distribution of human prohibitin complexes in the mitochondrial inner membrane, uncovering their bell-shaped structure and assembly of alternating PHB1 and PHB2 molecules.

    • Felix Lange
    • Michael Ratz
    • Stefan Jakobs
    ResearchOpen Access
    Nature Cell Biology
    Volume: 27, P: 633-640
  • A simple yet powerful super-resolution imaging approach based on switching off ordinary fluorophores and localizing those remaining or regaining fluorescence is illustrated using continuous widefield illumination and imaging of fixed and living cells labeled with rhodamine-derived dyes or fluorescent proteins. Biteen et al., also in this issue, describe related work using the ordinary fluorophore of EYFP for super-resolution imaging.

    • Jonas Fölling
    • Mariano Bossi
    • Stefan W Hell
    Research
    Nature Methods
    Volume: 5, P: 943-945
  • Two incoherently superimposed orthogonal standing waves are used to create a pattern of 116,000 'doughnuts' for fast, highly parallelized coordinate-targeted super-resolution microscopy of living cells, with a large field of view.

    • Andriy Chmyrov
    • Jan Keller
    • Stefan W Hell
    Research
    Nature Methods
    Volume: 10, P: 737-740
  • A dynamic model of the 4Pi point spread function enables localization microscopy with exceptional three-dimensional resolution and a simpler optical design. 4Pi-STORM images of neurons and mitochondria reveal new details of nanoscale protein and nucleic acid organization.

    • Mark Bates
    • Jan Keller-Findeisen
    • Stefan W. Hell
    ResearchOpen Access
    Nature Methods
    Volume: 19, P: 603-612
  • The TOM and TIM23 complexes facilitate the transport of nuclear-encoded proteins into the mitochondrial matrix. Here, the authors use a stalled client protein to purify the translocation supercomplex and gain insight into the TOM-TIM23 interface and the mechanism of protein handover from the TOM to the TIM23 complex.

    • Ridhima Gomkale
    • Andreas Linden
    • Peter Rehling
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-17
  • A fluorescence microscope relying entirely on focused light allows the generation of spherical focal fluorescence spots much smaller than the wavelength of light. This development, termed isoSTED, overcomes the resolution limitation imposed by the diffraction of light and permits three-dimensional nanoscale imaging inside cells with common fluorophores.

    • Roman Schmidt
    • Christian A Wurm
    • Stefan W Hell
    Research
    Nature Methods
    Volume: 5, P: 539-544
  • By exploiting a second off state of a reversibly switchable fluorophore, a general approach that can reduce photobleaching and enhance resolution of coordinate-targeted fluorescence nanoscopy has been demonstrated.

    • Johann G. Danzl
    • Sven C. Sidenstein
    • Stefan W. Hell
    Research
    Nature Photonics
    Volume: 10, P: 122-128
  • Brakemann et al. present a reversibly photoswitchable fluorescent protein, called Dreiklang, that can be turned on and off at wavelengths distinct from those used for imaging. They show that the protein is advantageous for studying protein dynamics in living cells and for super-resolution imaging.

    • Tanja Brakemann
    • Andre C Stiel
    • Stefan Jakobs
    Research
    Nature Biotechnology
    Volume: 29, P: 942-947
  • The surfaces of noble metals possess Shockley states which exhibit Rashba-type spin splitting and spin-momentum locking. Here, the authors use ab initiomethods and photoemission spectroscopy to demonstrate how such Shockley states may be reinterpreted as topologically protected surface states.

    • Binghai Yan
    • Benjamin Stadtmüller
    • Claudia Felser
    ResearchOpen Access
    Nature Communications
    Volume: 6, P: 1-6
  • The design of photoactivatable fluorophores—which are required for some super-resolution fluorescence microscopy methods—usually relies on light-sensitive protecting groups imparting lipophilicity and generating reactive by-products. Now, it has been shown that by exploiting a unique intramolecular photocyclization, bright and highly photostable fluorophores can be rapidly generated in situ from appropriately substituted 1-alkenyl-3,6-diaminoxanthone precursors.

    • Richard Lincoln
    • Mariano L. Bossi
    • Stefan W. Hell
    ResearchOpen Access
    Nature Chemistry
    Volume: 14, P: 1013-1020
  • rsEGFP2 is a reversibly photoswitchable fluorescent protein used in super-resolution light microscopy. Here the authors present the structure of an rsEGFP2 ground-state intermediate after excited state-decay that was obtained by nanosecond time-resolved serial femtosecond crystallography at an X-ray free electron laser, and time-resolved absorption spectroscopy measurements complement their structural analysis.

    • Joyce Woodhouse
    • Gabriela Nass Kovacs
    • Martin Weik
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-11
  • A systematic exploration of MINFLUX nanoscopy with DNA-PAINT labeling leads to improved nanoscopy in fixed cells and MINFLUX imaging with increased multiplexing, as exemplified by three-color imaging of mitochondria in mammalian cells.

    • Lynn M. Ostersehlt
    • Daniel C. Jans
    • Stefan Jakobs
    ResearchOpen Access
    Nature Methods
    Volume: 19, P: 1072-1075
  • Providing detailed structural descriptions of the ultrafast photochemical events that occur in light-sensitive proteins is key to their understanding. Now, excited-state structures in the reversibly switchable fluorescent protein rsEGFP2 have been solved by time-resolved crystallography using an X-ray laser. These structures enabled the design of a mutant with improved photoswitching quantum yields.

    • Nicolas Coquelle
    • Michel Sliwa
    • Martin Weik
    Research
    Nature Chemistry
    Volume: 10, P: 31-37
  • Entanglement was observed in top–antitop quark events by the ATLAS experiment produced at the Large Hadron Collider at CERN using a proton–proton collision dataset with a centre-of-mass energy of √s  = 13 TeV and an integrated luminosity of 140 fb−1.

    • G. Aad
    • B. Abbott
    • L. Zwalinski
    ResearchOpen Access
    Nature
    Volume: 633, P: 542-547
  • Fluorescence nanoscopy enables the optical imaging of cellular components with resolutions at the nanometre scale. With the growing availability of super-resolution microscopes, nanoscopy methods are being increasingly applied. Quantitative, multicolour, live-cell nanoscopy and the corresponding labelling strategies are under continuous development.

    • Steffen J. Sahl
    • Stefan W. Hell
    • Stefan Jakobs
    Reviews
    Nature Reviews Molecular Cell Biology
    Volume: 18, P: 685-701
  • Using super-resolution microscopy and cryo-electron microscopy, Stoldt et al. show that mitochondrial transcript translation and OXPHOS complex assembly are spatially partitioned within the mitochondrial membrane.

    • Stefan Stoldt
    • Dirk Wenzel
    • Stefan Jakobs
    Research
    Nature Cell Biology
    Volume: 20, P: 528-534
  • The ATLAS Collaboration reports the observation of the electroweak production of two jets and a Z-boson pair. This process is related to vector-boson scattering and allows the nature of electroweak symmetry breaking to be probed.

    • G. Aad
    • B. Abbott
    • L. Zwalinski
    ResearchOpen Access
    Nature Physics
    Volume: 19, P: 237-253
  • The measurement of the total cross-section of proton–proton collisions is of fundamental importance for particle physics. Here, the first measurement of the inelastic cross-section is presented for proton–proton collisions at an energy of 7 teraelectronvolts using the ATLAS detector at the Large Hadron Collider.

    • G. Aad
    • B. Abbott
    • L. Zwalinski
    ResearchOpen Access
    Nature Communications
    Volume: 2, P: 1-14
  • The ‘0.7-anomaly’ — an unexpected feature in the conductance of a quantum point contact — is shown to originate in a smeared van Hove singularity in the local density of states at the bottom of the lowest one-dimensional subband of the point contact.

    • Florian Bauer
    • Jan Heyder
    • Stefan Ludwig
    Research
    Nature
    Volume: 501, P: 73-78
  • Deep learning enables restoration of noisy 2D and 3D STED images for long-term super-resolution imaging.

    • Vahid Ebrahimi
    • Till Stephan
    • Kyu Young Han
    ResearchOpen Access
    Communications Biology
    Volume: 6, P: 1-8
  • Ruhlandt et al. report a plasmonic nanocavity-based method to measure absolute values of quantum yield of commonly used fluorescent proteins. The method is calibration-free, does not require knowledge about maturation or potential dark states, and works on minute amounts of sample. Authors are further able to determine lifetime and quantum yield of several fluorescent proteins, which would be a good resource for researchers working with them.

    • Daja Ruhlandt
    • Martin Andresen
    • Alexey I. Chizhik
    ResearchOpen Access
    Communications Biology
    Volume: 3, P: 1-7