Abstract
Bats and birds are defined by their convergent evolution of flight, hypothesized to require the modular decoupling of wing and leg evolution. Although a wealth of evidence supports this interpretation in birds, there has been no systematic attempt to identify modular organization in the bat limb skeleton. Here we present a phylogenetically representative and ecologically diverse collection of limb skeletal measurements from 111 extant bat species. We compare this dataset with a compendium of 149 bird species, known to exhibit modular evolution and anatomically regionalized skeletal adaptation. We demonstrate that, in contrast to birds, morphological diversification across crown bats is associated with strong trait integration both within and between the forelimb and hindlimb. Different regions of the bat limb skeleton adapt to accommodate variation in distinct ecological activities, with flight-style variety accommodated by adaptation of the distal wing, while the thumb and hindlimb play an important role facilitating adaptive responses to variation in roosting habits. We suggest that the wing membrane enforces evolutionary integration across the bat skeleton, highlighting that the evolution of the bat thumb is less correlated with the evolution of other limb bone proportions. We propose that strong limb integration inhibits bat adaptive responses, explaining their lower rates of phenotypic evolution and relatively homogeneous evolutionary dynamics in contrast to birds. Powered flight, enabled by the membranous wing, is therefore not only a key bat innovation but their defining inhibition.
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Data availability
All original µCT scan data are available on MorphoSource. A CSV file of metadata and accompanying MorphoSource URLs for each specimen is available at Zenodo82 for the GitHub repository https://github.com/aorkney/Bats_n_Birds. This repository contains a précis of limb landmark constellations across the subject bats—prepared as .RData files—ecological scores and an associated BibTeX repository. Where dependent datasets such as phylogenies and bird landmark constellations are already available in public repositories, DOIs are provided to the original sources. The ‘README’ direction file provides detailed instructions for reproduction.
Code availability
A Zenodo release82 of the GitHub repository https://github.com/aorkney/Bats_n_Birds contains R scripts necessary to reproduce the main manuscript figures. These scripts are commented, including machine specifications, associated run-times and a detailed ‘README’ suite of instructions is provided.
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Acknowledgements
We acknowledge the continued support of A. Bjarnason and R. Benson for their initial collection and distribution of the avian landmark constellations used in this study and B. Tronrud for the avian foot-use scores that she compiled in 2020. We acknowledge C. Goldstein for her diligent µCT data curation. We acknowledge the American Museum of Natural History, Cornell University Museum of Vertebrates, Harvard Museum of Comparative Zoology, University of Michigan Museum of Zoology, University of California Berkeley Museum of Vertebrate Zoology, Yale Peabody Museum, Muséum National d’Histoire Naturelle and Smithsonian National Museum of Natural History for use of bat µCT scan data generated from specimens housed in their collections. We acknowledge MorphoSource for curation and hosting of these data. We acknowledge the American Museum of Natural History, Cornell Institute of Biotechnology and Harvard University Center for Nanoscale Systems, for use of their biological imaging facilities. This manuscript is based upon work supported by the NSF Postdoctoral Research Fellowships in Biology Program under grant no. 1907235. The funders had no role in this project’s development, design and delivery. This funding applies to the work of D.B.B. Work undertaken by B.P.H. and A.O. was performed in part at the Harvard University Center for Nanoscale Systems; a member of the National Nanotechnology Coordinated Infrastructure Network, which is supported by the National Science Foundation under NSF award no. ECCS-2025158.
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A.O. envisioned and designed this study, supplemented the initial scan data collection, produced landmark constellations, undertook ecological scoring, undertook analyses and produced visualizations. D.B.B. undertook the majority of initial scan data collection and contributed to study design. B.P.H. envisioned and designed the study, supplemented the initial scan data collection, supervised and parsed analyses. All authors contributed to the written content of the manuscript.
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Extended data
Extended Data Fig. 1 Topological distance.
Topological distance is quantified as the number of appendicular epiphyseal joints (indicated by white circles) that must be crossed to travel between two bones. (a) The distance of the humerus to radius is 1, (b) Two joints must be crossed to travel from the humerus to the femur. (c) a third step will reach the tibia. (d) The femur and tibia are separated by 1 step. Blue, pink, white and black routes represent journeys between wing bones, leg bones, serially homologous and non-homologous bones.
Extended Data Fig. 2 Sex and age restricted cohorts replicate results.
(a) Normalized effect sizes of evolutionary covariances between bat skeletal element proportions. n=97 confirmed adults. (b) Normalized effect sizes of evolutionary covariances in random subsamples of 40 bat taxa, from a total of n=97 confirmed adults, organized by topological distance. n=40; 100 replicates. (c) Normalized effect sizes of evolutionary covariances between bat skeletal element proportions. n=47 males. (d) Normalized effect sizes of evolutionary covariances in random subsamples of 40 bat taxa, from a total of n=47 males, organized by topological distance. A decline in \(Z/\,\sqrt[]{n}\) with distance indicates a trend for more closely situated skeletal elements to exhibit stronger evolutionary integration n=40; 100 replicates. Grey envelope indicates the 95% confidence interval of n=40; 100 replicates from the full dataset of 111 species.
Extended Data Fig. 3 Phylograms of flight-style and foot-use across birds and bats.
(a) Flight-style variety across bats (b) Roosting ecology across bats (c) Flight-style variety across birds (d) Foot-use variety across birds. n bats =111, n birds =149.
Extended Data Fig. 4 Landmarking schemes employed to infer relative bat skeletal element sizes (Aethalops alecto used as model).
Landmarking schemes employed to infer relative bat skeletal element sizes: (a) Humerus (b) Handwing (c) Tibia (d) Radius (e) Femur, scale bar 10 mm (f) Schematic illustration of bat wing with handwing dactyl elements labelled mediolaterally I-V, and proximodistally a-d (g) Representation of variables included in handwing proportions, which are collapsed by Procrustes alignment and compiled into a 1 by 18 by n=111 array. (h) Representation of gross wing proportions, defined by the total wing length, craniocaudal depth and thumb length. This dataset is an n=111 by 3 table.
Extended Data Fig. 5 Removal of thumb landmarks affects perceived ecological adaptation within the bat wing.
(a) Normalized effect size of integration between transformed roosting ecology, bat gross wing proportions, handwing proportions, and the allometric residual of handwing size. Black: results when thumb landmarks are removed. (b) Normalized effect size of integration between transformed flight-style variety and bat morphological parameters. Effect-sizes computed within 100 randomly generated cohorts of n=100 bat species. Total available specimens n=111 bat species. The \(Z/\,\sqrt[]{n}=0.17\) isopleth (dashed) typically represents the lower bound of significance at an α=0.05 level. Solid envelopes represent significant relationships at the α=0.05 level, while dotted lines indicate non-significance. Illustrations A.O. 2024.
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Orkney, A., Boerma, D.B. & Hedrick, B.P. Evolutionary integration of forelimb and hindlimb proportions within the bat wing membrane inhibits ecological adaptation. Nat Ecol Evol 9, 111–123 (2025). https://doi.org/10.1038/s41559-024-02572-9
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DOI: https://doi.org/10.1038/s41559-024-02572-9
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