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Showing 1–50 of 86 results
Advanced filters: Author: Allan Feng Clear advanced filters
  • Here, the authors conduct a GWAS for eGFR, then a three-stage regional meta-analysis using GWAS summary data from the Eastern, Western, and Southern African geographical regions. Followed by fine mapping, colocalization, functional annotation, pathway analysis, and phenome-wide association studies showing weaker APOL1 effects in Africa.

    • Abram B. Kamiza
    • Tinashe Chikowore
    • Segun Fatumo
    ResearchOpen Access
    Nature Communications
    P: 1-13
  • High-depth sequencing of non-cancerous tissue from patients with metastatic cancer reveals single-base mutational signatures of alcohol, smoking and cancer treatments, and reveals how exogenous factors, including cancer therapies, affect somatic cell evolution.

    • Oriol Pich
    • Sophia Ward
    • Nicholas McGranahan
    ResearchOpen Access
    Nature
    P: 1-11
  • Managing power exhaust in fusion reactors is a key challenge, especially in compact designs for cost-effective commercial energy. This study shows how alternative divertor configurations improve exhaust control, enhance stability, absorb transients and enable independent plasma regulation.

    • B. Kool
    • K. Verhaegh
    • V. Zamkovska
    ResearchOpen Access
    Nature Energy
    Volume: 10, P: 1116-1131
  • A global network of researchers was formed to investigate the role of human genetics in SARS-CoV-2 infection and COVID-19 severity; this paper reports 13 genome-wide significant loci and potentially actionable mechanisms in response to infection.

    • Mari E. K. Niemi
    • Juha Karjalainen
    • Chloe Donohue
    ResearchOpen Access
    Nature
    Volume: 600, P: 472-477
  • Peptidoglycan fragments derived from gut bacteria modulate aspects of the host’s health. Here, Li et al. profile peptidoglycan fragments in the host gut and show that one of them, the disaccharide GlcNAc-MurNAc, acts as a mild TLR4 agonist and protects against gut inflammation.

    • Chenyu Li
    • Christopher Adamson
    • Yuan Qiao
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-17
  • A genome-wide association meta-analysis study of blood lipid levels in roughly 1.6 million individuals demonstrates the gain of power attained when diverse ancestries are included to improve fine-mapping and polygenic score generation, with gains in locus discovery related to sample size.

    • Sarah E. Graham
    • Shoa L. Clarke
    • Cristen J. Willer
    Research
    Nature
    Volume: 600, P: 675-679
  • Whole-genome sequencing, transcriptome-wide association and fine-mapping analyses in over 7,000 individuals with critical COVID-19 are used to identify 16 independent variants that are associated with severe illness in COVID-19.

    • Athanasios Kousathanas
    • Erola Pairo-Castineira
    • J. Kenneth Baillie
    ResearchOpen Access
    Nature
    Volume: 607, P: 97-103
  • Profiling the immune responses of 56 volunteers vaccinated with BNT162b2 reveals how this mRNA vaccine primes the innate immune system to mount a potent response to SARS-CoV-2 after booster immunization.

    • Prabhu S. Arunachalam
    • Madeleine K. D. Scott
    • Bali Pulendran
    Research
    Nature
    Volume: 596, P: 410-416
  • Transition metal dichalcogenide bilayers offer a novel platform for studying correlated electron-hole fluids. Here the authors use optical spectroscopy to probe thermodynamic properties of coupled electron-hole states in MoSe2/hBN/WSe2 heterostructures, providing evidence for an excitonic insulator ground state.

    • Ruishi Qi
    • Andrew Y. Joe
    • Feng Wang
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-9
  • A trans-ancestry meta-analysis of GWAS of glycemic traits in up to 281,416 individuals identifies 99 novel loci, of which one quarter was found due to the multi-ancestry approach, which also improves fine-mapping of credible variant sets.

    • Ji Chen
    • Cassandra N. Spracklen
    • Cornelia van Duijn
    Research
    Nature Genetics
    Volume: 53, P: 840-860
  • This isoform-centric microglia genomic atlas includes 35,879 novel human microglia isoforms identified by long-read RNA sequencing. A multi-ancestry quantitative trait locus meta-analysis of known and novel isoforms in 555 samples from 391 donors finds associations with genetic risk loci in Alzheimer’s and Parkinson’s diseases.

    • Jack Humphrey
    • Erica Brophy
    • Towfique Raj
    Research
    Nature Genetics
    Volume: 57, P: 604-615
  • Combination of epidemiology, preclinical models and ultradeep DNA profiling of clinical cohorts unpicks the inflammatory mechanism by which air pollution promotes lung cancer

    • William Hill
    • Emilia L. Lim
    • Charles Swanton
    Research
    Nature
    Volume: 616, P: 159-167
  • To mark the occasion of Nature Chemistry turning 10 years old, we asked scientists working in different areas of chemistry to tell us what they thought the most exciting, interesting or challenging aspects related to the development of their main field of research will be — here is what they said.

    • Alán Aspuru-Guzik
    • Mu-Hyun Baik
    • Hua Zhang
    Special Features
    Nature Chemistry
    Volume: 11, P: 286-294
  • Infection with SARS-CoV2 and the development of Coronavirus disease 2019 (COVID-19) has been linked to induction of autoimmunity and autoantibody production. Here the authors characterise the new-onset IgG autoantibody response in hospitalised patients with COVID-19 which they correlate to the magnitude of the SARS-CoV2 response.

    • Sarah Esther Chang
    • Allan Feng
    • Paul J. Utz
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-15
  • By integrating the serum concentration of a broadly neutralizing antibody (bNAb) with its in vitro 80% inhibitory concentration, the PT80 biomarker may be used to guide target levels of bNAbs for effective prevention of HIV-1 acquisition.

    • Peter B. Gilbert
    • Yunda Huang
    • Lynn Morris
    ResearchOpen Access
    Nature Medicine
    Volume: 28, P: 1924-1932
  • Majorana bound states are an elusive but promising platform for future topological quantum computation. Here, the authors use local shot noise spectroscopy to determine the nature of charge transfer into zero-energy bound states in superconducting vortices and rule out the presence of impurity states.

    • Jian-Feng Ge
    • Koen M. Bastiaans
    • Milan P. Allan
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-8
  • Glioblastoma can be classified based on IDH and TERT promoter mutations, but ~20% of glioblastoma do not have these mutations (TERTpWT-IDHWT glioblastoma). Here, the authors present a genetic landscape of TERTpWT-IDHWT glioblastoma, identifying a telomerase-positive subgroup driven by TERT-structural rearrangements and an ALT-positive subgroup with mutations in ATRX or SMARCAL1.

    • Bill H. Diplas
    • Xujun He
    • Hai Yan
    ResearchOpen Access
    Nature Communications
    Volume: 9, P: 1-11
  • Combined patch clamp recording, biocytin staining and single-cell RNA-sequencing of human neurocortical neurons shows an expansion of glutamatergic neuron types relative to mouse that characterizes the greater complexity of the human neocortex.

    • Jim Berg
    • Staci A. Sorensen
    • Ed S. Lein
    ResearchOpen Access
    Nature
    Volume: 598, P: 151-158
  • Using mouse lines in which subsets of neurons are genetically labelled, the authors provide generalized anatomical rules for connections within and between the cortex and thalamus.

    • Julie A. Harris
    • Stefan Mihalas
    • Hongkui Zeng
    Research
    Nature
    Volume: 575, P: 195-202
  • Sarcopenia is the loss of muscle mass and strength associated with physical disability during ageing. Here, the authors analyse muscle biopsies from 119 patients with sarcopenia and age-matched controls of different ethnic groups and find transcriptional signatures indicating mitochondrial dysfunction, associated with reduced mitochondria numbers and lower NAD+ levels in older individuals with sarcopenia.

    • Eugenia Migliavacca
    • Stacey K. H. Tay
    • Jerome N. Feige
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-14
  • Data from over 700,000 individuals reveal the identity of 83 sequence variants that affect human height, implicating new candidate genes and pathways as being involved in growth.

    • Eirini Marouli
    • Mariaelisa Graff
    • Guillaume Lettre
    Research
    Nature
    Volume: 542, P: 186-190
  • A spatially resolved transcriptional atlas of the mid-gestational developing human brain has been created using laser-capture microdissection and microarray technology, providing a comprehensive reference resource which also enables new hypotheses about the nature of human brain evolution and the origins of neurodevelopmental disorders.

    • Jeremy A. Miller
    • Song-Lin Ding
    • Ed S. Lein
    Research
    Nature
    Volume: 508, P: 199-206
  • Stig Bojesen, Georgia Chenevix-Trench, Alison Dunning and colleagues report common variants at the TERT-CLPTM1L locus associated with mean telomere length measured in whole blood. They also identify associations at this locus to breast or ovarian cancer susceptibility and report functional studies in breast and ovarian cancer tissue and cell lines.

    • Stig E Bojesen
    • Karen A Pooley
    • Alison M Dunning
    Research
    Nature Genetics
    Volume: 45, P: 371-384
  • KLF4, OCT4, SOX2 and MYC cooperate to reorganize chromatin during somatic cell reprogramming. Here the authors show that KLF4 forms a liquid-like biomolecular condensate that recruits OCT4 and SOX2, and that condensation of the isolated KLF4 DNA binding domain with DNA is enhanced by CpG methylation

    • Rajesh Sharma
    • Kyoung-Jae Choi
    • Josephine C. Ferreon
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-17
  • Analyses of data from the UK Biobank reveal different urban living environments that are associated with affective, anxiety and emotional instability symptom groups and mediated by distinct neurological and genetic pathways in adults.

    • Jiayuan Xu
    • Nana Liu
    • George Ogoh
    ResearchOpen Access
    Nature Medicine
    Volume: 29, P: 1456-1467
  • Imputation uses genotype information from SNP arrays to infer the genotypes of missing markers. Here, the authors show that an imputation reference panel derived from whole-genome sequencing of 3,781 samples from the UK10K project improves the imputation accuracy and coverage of low frequency variants compared to existing methods.

    • Jie Huang
    • Bryan Howie
    • Nicole Soranzo
    ResearchOpen Access
    Nature Communications
    Volume: 6, P: 1-9
  • Thyroid dysfunction is a common public health problem and associated with cardiovascular co-morbidities. Here, the authors carry out genome-wide meta-analysis for thyroid hormone (TH) levels, hyper- and hypothyroidism and identify SLC17A4 as a TH transporter and AADAT as a TH metabolizing enzyme.

    • Alexander Teumer
    • Layal Chaker
    • Marco Medici
    ResearchOpen Access
    Nature Communications
    Volume: 9, P: 1-14
  • RNA-sequencing analysis of cells in the human cortex enabled identification of diverse cell types, revealing well-conserved architecture and homologous cell types as well as extensive differences when compared with datasets covering the analogous region of the mouse brain.

    • Rebecca D. Hodge
    • Trygve E. Bakken
    • Ed S. Lein
    Research
    Nature
    Volume: 573, P: 61-68
  • An appetite-regulating subnetwork in humans involving the lateral hypothalamus and the dorsolateral hippocampus is implicated in obesity and related eating disorders.

    • Daniel A. N. Barbosa
    • Sandra Gattas
    • Casey H. Halpern
    ResearchOpen Access
    Nature
    Volume: 621, P: 381-388
  • Laser microdissection and microarrays are used to assess 900 precise subdivisions of the brains from three healthy men with 60,000 gene expression probes; the resulting atlas allows comparisons between humans and other animals, and will facilitate studies of human neurological and psychiatric diseases.

    • Michael J. Hawrylycz
    • Ed S. Lein
    • Allan R. Jones
    Research
    Nature
    Volume: 489, P: 391-399
  • In mouse, an axonal connectivity map showing the wiring patterns across the entire brain has been created using an EGFP-expressing adeno-associated virus tracing technique, providing the first such whole-brain map for a vertebrate species.

    • Seung Wook Oh
    • Julie A. Harris
    • Hongkui Zeng
    Research
    Nature
    Volume: 508, P: 207-214
  • The expression of each of the roughly 22,000 genes of the mouse genome has been mapped, at cellular resolution, across all major structures of the mouse brain, revealing that 80% of all genes appear to be expressed in the brain.

    • Ed S. Lein
    • Michael J. Hawrylycz
    • Allan R. Jones
    Research
    Nature
    Volume: 445, P: 168-176
  • Fluorescent sensors for small biomolecules are needed to shed insight into real-time cellular processes. Here the authors develop RealThiol, a sensor that can quantitatively monitor glutathione dynamics in living cells, and measure increased antioxidant capability of activated neurons and glutathione changes during ferroptosis.

    • Xiqian Jiang
    • Jianwei Chen
    • Jin Wang
    ResearchOpen Access
    Nature Communications
    Volume: 8, P: 1-13
  • Hand grip strength as a proxy of muscular fitness is a clinical predictor of mortality and morbidity. In a large-scale GWA study, the authors find 16 robustly associated genetic loci that highlight roles in muscle fibre structure and function, neuronal maintenance and nervous system signal transduction.

    • Sara M. Willems
    • Daniel J. Wright
    • Robert A. Scott
    ResearchOpen Access
    Nature Communications
    Volume: 8, P: 1-12
  • Levels of circulating thyrotropin and free thyroxine reflect thyroid function, however, their genetic underpinnings remain poorly understood. Taylor et al. take advantage of whole-genome sequence data from cohorts within the UK10K project to identify novel variants associated with these traits.

    • Peter N. Taylor
    • Eleonora Porcu
    • Pingbo Zhang
    ResearchOpen Access
    Nature Communications
    Volume: 6, P: 1-11