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Showing 1–44 of 44 results
Advanced filters: Author: Ron O. Dror Clear advanced filters
  • Cryogenic electron microscopy structures and functional analyses reveal that NCLX functions as a H+/Ca2+ rather than a Na+/Ca2+ exchanger, and uncover its transport mechanism with implications for therapies treating cardiac and neurodegenerative disorders related to abnormal mitochondrial Ca2+.

    • Minrui Fan
    • Chen-Wei Tsai
    • Liang Feng
    ResearchOpen Access
    Nature
    P: 1-9
  • The results of the Fifth RNA-Puzzles contest highlights advances in RNA three-dimensional structure prediction and uncovers new insights into RNA folding and structure.

    • Fan Bu
    • Yagoub Adam
    • Zhichao Miao
    ResearchOpen Access
    Nature Methods
    Volume: 22, P: 399-411
  • A peripherally restricted CB1 agonist (VIP36) targeting a cryptic receptor pocket was developed, showing high efficacy in mouse pain models with minimal side effects and tolerance, potentially revolutionizing chronic pain treatment and GPCR drug design.

    • Vipin Ashok Rangari
    • Evan S. O’Brien
    • Susruta Majumdar
    Research
    Nature
    Volume: 640, P: 265-273
  • Ligands that activate GPCRs generally do so by stabilizing a particular conformation of the transmembrane helices. Here, the authors reveal a distinct activation mechanism where a ligand instead stabilizes a particular intracellular loop conformation.

    • Alexander S. Powers
    • Aasma Khan
    • Ron O. Dror
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-12
  • Allosteric GPCR modulators can achieve exquisite subtype selectivity, but the underlying mechanism is unclear. Using molecular dynamics simulations, the authors here identify a previously undetected dynamic pocket in muscarinic GPCRs that is critical for subtype selectivity of allosteric modulators.

    • Scott A. Hollingsworth
    • Brendan Kelly
    • Ron O. Dror
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-9
  • The use of atomic-level simulations reveals a molecular mechanism by which a ligand can achieve selectivity between nearly identical receptors, enabling the rational design of targeted drugs.

    • Alexander S. Powers
    • Vi Pham
    • Ron O. Dror
    ResearchOpen Access
    Nature Chemical Biology
    Volume: 19, P: 805-814
  • The drug Xanomeline is progressing through clinical trials for the treatment of patients with schizophrenia. Here, the authors determine a cryo-EM structure of Xanomeline bound to its primary target revealing a dual binding mode mechanism.

    • Wessel A. C. Burger
    • Vi Pham
    • David M. Thal
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-11
  • Cryo-EM structures of µ-opioid receptor complexes with two agonists coupled to molecular dynamics simulations and functional assays highlight distinct efficacy for G protein subtype activation and β-arrestin recruitment.

    • Qianhui Qu
    • Weijiao Huang
    • Georgios Skiniotis
    Research
    Nature Chemical Biology
    Volume: 19, P: 423-430
  • Biased signaling in κ-opiod receptors (KOR) offer an attractive strategy for pain management. Here the authors identify determinants of KOR signaling bias using structural methods in combination with molecular dynamics simulations.

    • Amal El Daibani
    • Joseph M. Paggi
    • Tao Che
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-13
  • D2 dopamine receptor ligands biased for b-arrestin recruitment were developed based on a receptor homology model that identified conserved ligand contacts within the TM5 and EL2 regions as important for biased signaling.

    • John D McCorvy
    • Kyle V Butler
    • Bryan L Roth
    Research
    Nature Chemical Biology
    Volume: 14, P: 126-134
  • Structural findings define the architecture of the mitochondrial pyruvate carrier, delineate its substrate-binding site and translocation pathway, and reveal its major conformational states, providing the molecular basis for understanding its function and inhibition.

    • Zheng He
    • Jianxiu Zhang
    • Liang Feng
    Research
    Nature
    Volume: 641, P: 250-257
  • Determination of the cryo-EM structures of active neurokinin-1 receptor bound to substance P or the Gq biased peptide SP6–11 reveals that interactions with the receptor extracellular loops regulate G protein signaling selectivity.

    • Julian A. Harris
    • Bryan Faust
    • Aashish Manglik
    Research
    Nature Chemical Biology
    Volume: 18, P: 109-115
  • Binding modes and molecular mechanisms of several allosteric modulators of a prototypical G-protein-coupled receptor are revealed using atomic-level simulations and validated by the rational design of a modulator with substantially altered effects.

    • Ron O. Dror
    • Hillary F. Green
    • David E. Shaw
    Research
    Nature
    Volume: 503, P: 295-299
  • This manuscript describes the structure of an endocannabinoid analog-bound CB1 complex and reveals the structural determinants of ligand efficacy. The activation mechanism, unique to CB1, that is exploited by allosteric modulators is also outlined.

    • Kaavya Krishna Kumar
    • Michael J. Robertson
    • Brian Kobilka
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-11
  • Cryo-electron microscopy structures of the thyrotropin receptor reveal the basis for the activation of the receptor by autoantibodies in patients with Graves’ disease.

    • Bryan Faust
    • Christian B. Billesbølle
    • Aashish Manglik
    Research
    Nature
    Volume: 609, P: 846-853
  • A comprehensive spatial expression atlas of the adult human proximal small intestine reveals branched villi, immune activation at the villus tip, and a switch of migrating enterocytes from lipid droplet assembly and iron uptake at the villus bottom to chylomicron biosynthesis and iron release at the tip.

    • Yotam Harnik
    • Oran Yakubovsky
    • Shalev Itzkovitz
    Research
    Nature
    Volume: 632, P: 1101-1109
  • Cryo-electron microscopy structures of human neurotensin receptor 1 in complex with Gi1 protein and the agonist JMV449 reveal a non-canonical state that may represent an intermediate form in G-protein activation.

    • Hideaki E. Kato
    • Yan Zhang
    • Georgios Skiniotis
    Research
    Nature
    Volume: 572, P: 80-85
  • Cryo-electron microscopy structures of the sodium–glucose cotransporter SGLT1 and a related transporter SMCT1 define the architecture of this protein family and provide insights into substrate binding and transport function.

    • Lei Han
    • Qianhui Qu
    • Liang Feng
    Research
    Nature
    Volume: 601, P: 274-279
  • A cryo-electron structure of the µ-opioid receptor in complex with the peptide agonist DAMGO and the inhibitory G protein Gi reveals structural determinants of its G protein-binding specificity.

    • Antoine Koehl
    • Hongli Hu
    • Brian K. Kobilka
    Research
    Nature
    Volume: 558, P: 547-552
  • X-ray crystallography and molecular dynamics simulations of the μ-opioid receptor reveal the conformational changes in the extracellular and intracellular domains of this G-protein-coupled receptor that are associated with its activation.

    • Weijiao Huang
    • Aashish Manglik
    • Brian K. Kobilka
    Research
    Nature
    Volume: 524, P: 315-321
  • Crystal structures and molecular simulations of the designed anion-conducting channelrhodopsin iC++ provide molecular insights that enable structure-based design of channelrhodopsins with desirable properties for use as optogenetic tools.

    • Hideaki E. Kato
    • Yoon Seok Kim
    • Karl Deisseroth
    Research
    Nature
    Volume: 561, P: 349-354
  • The chemokine CXCL10 is associated with pathogenesis of cerebral malaria in Plasmodium falciparum infection. Here the authors show that P. falciparum produces extracellular vesicles laden with RNAs that are taken up by monocytes resulting in a RIG-I and HUR-1 mediated mechanism of inhibition of CXCL10 protein translation.

    • Yifat Ofir-Birin
    • Hila Ben Ami Pilo
    • Neta Regev-Rudzki
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-15
  • Transient engagement of the G protein-coupled receptor core can act as a catalyst to activate cellular β-arrestin function after dissociation from the receptor.

    • Kelsie Eichel
    • Damien Jullié
    • Mark von Zastrow
    Research
    Nature
    Volume: 557, P: 381-386
  • Crystal structures of human σ1 receptor bound to the antagonists haloperidol and NE-100, and to agonist (+)-pentazocine, alongside MD simulations, reveal a unique binding pose for, and major conformational rearrangements induced by, the agonist.

    • Hayden R. Schmidt
    • Robin M. Betz
    • Andrew C. Kruse
    Research
    Nature Structural & Molecular Biology
    Volume: 25, P: 981-987
  • The X-ray crystal structure of the human G-protein-coupled receptor protease-activated receptor 1 (PAR1) bound to the antagonist vorapaxar is solved, revealing an unusual method of drug binding that should facilitate the development of improved PAR1-selective antagonists.

    • Cheng Zhang
    • Yoga Srinivasan
    • Brian K. Kobilka
    Research
    Nature
    Volume: 492, P: 387-392
  • The cryo-EM structure of the zebrafish cation–chloride cotransporter NKCC1 reveals the domain organization, ion translocation pathway, ion-binding sites and key residues for binding activity, providing insights into the activity of this family of transporter proteins with key roles in physiology.

    • Thomas A. Chew
    • Benjamin J. Orlando
    • Liang Feng
    Research
    Nature
    Volume: 572, P: 488-492
  • Molecular dynamics simulations and site-directed fluorescence spectroscopy show that the transmembrane core and cytoplasmic tail of G-protein-coupled receptors independently and cooperatively activate arrestin.

    • Naomi R. Latorraca
    • Jason K. Wang
    • Ron O. Dror
    Research
    Nature
    Volume: 557, P: 452-456
  • The X-ray crystal structure of the M3 muscarinic acetylcholine receptor bound to the bronchodilator drug tiotropium is reported; comparison of this structure with that of the M2 muscarinic acetylcholine receptor reveals key differences that could potentially be exploited to develop subtype-selective drugs.

    • Andrew C. Kruse
    • Jianxin Hu
    • Brian K. Kobilka
    Research
    Nature
    Volume: 482, P: 552-556
  • The X-ray crystal structure of the human β2 adrenergic receptor, a G-protein-coupled receptor (GPCR), covalently bound to a small-molecule agonist is solved. Comparison of this structure with structures of this GPCR in an inactive state and in an antibody-stabilized active state reveals how binding events at both the extracellular and intracellular surfaces stabilize the active conformation of the receptor. Molecular dynamics simulations suggest that the agonist-bound active state spontaneously relaxes to an inactive-like state in the absence of a G protein.

    • Daniel M. Rosenbaum
    • Cheng Zhang
    • Brian K. Kobilka
    Research
    Nature
    Volume: 469, P: 236-240