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Viral pathogen load in cancer genomes is estimated through analysis of sequencing data from 2,656 tumors across 35 cancer types using multiple pathogen-detection pipelines, identifying viruses in 382 genomic and 68 transcriptome datasets.

Zhu et al. show using intracranial recordings that semantic and syntactic (grammatical) processing elicit distinct patterns of neural activity in speakers of Chinese, a language for which the distinction between syntax and semantics has been questioned.

The characterization of 4,645 whole-genome and 19,184 exome sequences, covering most types of cancer, identifies 81 single-base substitution, doublet-base substitution and small-insertion-and-deletion mutational signatures, providing a systematic overview of the mutational processes that contribute to cancer development.

The development of practical photonic quantum technologies will be aided by the spatial control of entangled photons. Lenget al. achieve on-chip spatial control of entangled photons by using domain engineering, rather than by using external optical elements.

Here, Cilleros-Portet et al. present a large placental methylation database as a tool to explore the genetic burden that acts in prenatal stages, giving insight into neuropsychiatric disorders, and with especial emphasis on schizophrenia.

Plasma proteomic analysis of presymptomatic individuals with amyotrophic lateral sclerosis identifies novel disease-associated proteins and enables the development of an accurate diagnostic biomarker panel.

The authors present a multiomics study of type 2 diabetes and quantitative blood lipid and lipoprotein traits in Hispanic/Latino populations. They demonstrate how integrating GWAS with omics characterization can advance precision medicine.

The processes that lead to losses of highly energetic particles from Earth’s radiation belts remain poorly understood. Here the authors compare observations and models of a 2013 event to show that electromagnetic ioncyclotron waves provide the dominant loss mechanism at ultra-relativistic energies.

For small twist angles, electrons can resonantly tunnel between graphene layers in a van der Waals heterostructure. It is now shown that the tunnelling not only preserves energy and momentum, but also the chirality of electronic states.

Species’ traits and environmental conditions determine the abundance of tree species across the globe. Here, the authors find that dominant tree species are taller and have softer wood compared to rare species and that these trait differences are more strongly associated with temperature than water availability.

The mechanism of macrophage cytotoxicity against cancer cells requires further illustration. By employing CRISPR screening in CAR-macrophage and cancer cell co-culture system, the authors identify depletion of ATG9A on cancer cells sensitizes them to macrophage-mediated killing, which can be synergic with CSF1R inhibition in cancer treatment.

Examining drivers of the latitudinal biodiversity gradient in a global database of local tree species richness, the authors show that co-limitation by multiple environmental and anthropogenic factors causes steeper increases in richness with latitude in tropical versus temperate and boreal zones.

Superconductivity in the cuprates is known to be intertwined with charge and spin density waves. Here, the authors study the prototypical cuprate La_1.885Sr_0.115CuO₄ via x-ray scattering and discover a sudden increase in the charge-density-wave amplitude upon entering the superconducting-vortex-liquid state at high magnetic field.

Understanding deregulation of biological pathways in cancer can provide insight into disease etiology and potential therapies. Here, as part of the PanCancer Analysis of Whole Genomes (PCAWG) consortium, the authors present pathway and network analysis of 2583 whole cancer genomes from 27 tumour types.

In somatic cells the mechanisms maintaining the chromosome ends are normally inactivated; however, cancer cells can re-activate these pathways to support continuous growth. Here, the authors characterize the telomeric landscapes across tumour types and identify genomic alterations associated with different telomere maintenance mechanisms.

Coelacanths are known for their conservative morphology. Here, the authors describe a 380 million year-old coelacanth fossil from the Gogo Formation (Western Australia) with morphology representative of a key transition where coelacanth morphology disparity shifts.

Some cancer patients first present with metastases where the location of the primary is unidentified; these are difficult to treat. In this study, using machine learning, the authors develop a method to determine the tissue of origin of a cancer based on whole sequencing data.

Four receptor-like cytoplasmic kinases (RLCKs) phosphorylate guanine nucleotide exchange factors (RopGEFs), filling a critical gap in the signalling pathway connecting cell surface auxin and RHO GTPases (ROPs) in Arabidopsis.

This study uses machine learning to design a coolhouse film that regulates temperature and water evaporation to maximize plant photosynthesis efficiency. The film selectively transmits the sunlight needed for photosynthesis, improving crop yield and survival rates in hot, arid regions.

The bacterium Helicobacter pylori, often found in the human stomach, can be classified into distinct subpopulations associated with the geographic origin of the host. Here, the authors provide insights into H. pylori population structure by collecting over 1,000 clinical strains from 50 countries and generating and analyzing high-quality bacterial genome sequences.

The CMS Collaboration reports the study of three simultaneous hard interactions between quarks and gluons in proton–proton collisions. This manifests through the concurrent production of three J/ψ mesons, which consist of a charm-quark–antiquark pair.

In an updated report on 70 laboratory-confirmed highly pathogenic avian influenza A H5N1 cases in the USA between March 2024 and May 2025, the absence of human-to-human transmission to date was confirmed, with no known mutations of resistance to neuroaminidase inhibitors.

Typical quantum error correcting codes assign fixed roles to the underlying physical qubits. Now the performance benefits of alternative, dynamic error correction schemes have been demonstrated on a superconducting quantum processor.

Here, the authors develop the Gut Microbiome Wellness Index 2 (GMWI2), an enhanced version of the original GMWI prototype, designed as a disease-agnostic health status indicator based on gut microbiome taxonomic profiles.

Biodegradable plastics usually have poorer mechanical or transport properties compared to conventional plastics. Here the authors show a class of biorenewable and chemically recyclable plastics based on copolymers of γ-butyrolactone and its ring-fused derivative, with competitive properties compared to conventional plastics.

The study of lattice vibrations coupled to electronic excitations may provide an avenue for exploring exotic physical phenomena. Here, Xuet al. observe a Fano resonance in the Weyl semimetal TaAs, revealing evidence for a strong coupling between phonons and Weyl fermions.

Quantum electrodynamics predicts a rare process in which light is scattered by light. The ATLAS Collaboration reports signs of this elusive effect in the collisions of ultra-relativistic lead ions.

Composites of carbon nanotubes and superconductors provide technologically important new, or improved, functionalities. Here, with a chemical solution approach, well-aligned carbon nanotube forests embedded in a superconducting NbC matrix are shown to effectively enhance the superconducting properties of NbC.

Models predict that giant planets should easily form around solar-type stars, but most radial velocity surveys found a rather low number of them. Here, the authors show that Jupiter-like planets may be more common than previously found, at least in low density environments.

Little is known about the transition of a metal nanoparticle from the plasmonic to excitonic state. Here, the authors map this evolution in atomically precise gold nanoparticles, a critical step for understanding the origins of surface plasmon resonance, metallic bonding, and catalytic behaviour.

For FRB 121102, 1,652 burst events are detected over 47 days, with a peak burst rate of 122 per hour, a bimodal burst rate energy distribution, and no periodicity or quasi-periodicity.

Altermagnets combine the rapid dynamics and zero magnetization of collinear antiferromagnets with the spin-splitting of ferromagnets, making them an idea platform for both fundamental research and applications. Here, Yang, Li and coauthors map the large altermagnetic spin-splitting in CrSb located near the Fermi level.

There is evidence that K₃C₆₀ can host a photo-induced superconducting state. Now, resonant excitation at low frequencies allows this phenomenon at room temperature and low pumping fluence.

A unified framework is presented that integrates observed spatial patterns of individual trees in forests with ecological processes into a novel coexistence theory.

Analysis of a set of 1,863 bursts from the repeating source FRB 20201124A provides evidence of a complicated magnetized site within about an astronomical unit from the source in a barred galaxy.

A multi-ancestry genome-wide gene–smoking interaction study identifies 13 new loci associated with serum lipids.

Grasslands tend to be limited by both nutrient and water availability. Here the authors use standardized field experiments to show that the effects of nutrient addition on grassland biomass may cancel out the negative impact of drought, but the outcome depends on aridity and other local conditions.

Sr_1−yMn_1−zSb₂ (y, z < 0.1) is reported to be a magnetic topological semimetal exhibiting nearly massless relativistic fermions.

A nano-optical probe of the Purcell effect in a van der Waals waveguide is demonstrated, exploiting its highly confined infrared waveguide modes and the capacity for infrared emission in the monolayer limit of atomically layered van der Waals materials.

Designing biodegradable plastics is highly desirable, though it has been a challenge to balance mechanical properties with biodegradability. Here the authors design a multilayered biodegradable composite without compromising the mechanical properties.

Photonic circuits often require separate components to manipulate light with orthogonal polarization, but this increases the chip size. Here, the authors create a polarization-dependent beam-splitter that uses dielectric loaded plasmonic waveguides to handle both polarizations in the same component.

Precise control of the relative orientation of two two-dimensional layers enables reproducible fabrication of heterostructure devices. Here, the authors show that graphene rotates towards the crystallographic direction of a boron-nitride substrate due to the interplay between van der Waals and elastic energies.

Enfortumab vedotin (EV) is the current standard treatment for advanced bladder cancer, but resistance typically develops within a year, highlighting the need for new therapies. This study demonstrates that NECTIN4-targeting CAR T cells are effective against bladder cancer, including EV-resistant cells, and their potency can be further enhanced by using rosiglitazone to boost NECTIN4 expression.

Meta-analysis of genome-wide association studies on Alzheimer’s disease and related dementias identifies new loci and enables generation of a new genetic risk score associated with the risk of future Alzheimer’s disease and dementia.

In this study the authors identify a possible link between the gene FAM222A and brain atrophy. The protein it encodes is found to accumulate in plaques seen in Alzheimer’s disease, and functional analysis suggests it interacts with amyloid-beta.

The measurement of the total cross-section of proton–proton collisions is of fundamental importance for particle physics. Here, the first measurement of the inelastic cross-section is presented for proton–proton collisions at an energy of 7 teraelectronvolts using the ATLAS detector at the Large Hadron Collider.

Crystalline dispersoids are commonly used to strengthen metals by obstructing dislocation movement, but this often comes at the cost of ductility. Here, the authors demonstrate that amorphous nanoparticles, introduced via additive manufacturing, enhance both the tensile strength and fatigue resistance of metallic materials.

Effective band-gap engineering of armchair graphene nanoribbons calls for control over both width and edge structure. Here, the authors report a modular synthesis of narrow N = 6 armchair graphene nanoribbons whose edges can be unsymmetrically modified with heteroarenes, introducing a simple way to tune band gap.

In this Perspective, members of the Aging Biomarker Consortium outline the X-Age Project, an Aging Biomarker Consortium plan for building standardized aging clocks in China. The authors discuss the project roadmap and its aims of decoding aging heterogeneity, detecting accelerated aging early and evaluating geroprotective interventions.