Introduction

According to current international consensus criteria, NeuroHIV encompasses a spectrum of disorders, including asymptomatic neurocognitive impairment (ANI), mild neurocognitive disorder (MND), and HIV-associated dementia (HAD), each characterized by a wide range of clinical symptoms such as cognitive, behavioral, and motor deficits [1]. Before antiretroviral therapy (ART) became widely available, severe cognitive impairments were observed in as many as 50% of individuals living with HIV (PLWH) [2]. With the introduction of ART, the estimated prevalence of NeuroHIV is approximately 42.6%. Within this population, the reported rates of ANI, MND, and HAD are 23.5, 13.3, and 5.0%, respectively [1]. Additionally, PLWH have a 58% increased likelihood of developing dementia compared to those without HIV-1 [3]. Notably, the use of ART has not been shown to reduce this risk, highlighting that HIV-1 is closely associated with the development of NeuroHIV even in those undergoing ART. This ongoing challenge underscores the need for effective interventions to address HAND in both ART-treated and ART-naïve individuals [4].

Several factors predispose individuals to NeuroHIV, including the direct neurotoxic effects of HIV-1, the inflammation it triggers in the brain (neuroinflammation), the potential neurotoxicity of ART drugs, and sociodemographic characteristics like age and the presence of co-occurring health conditions [5]. While the specific roles and interactions of direct viral mechanisms, indirect effects mediated by the host immune response, and these other contributing factors in NeuroHIV pathogenesis remain complex and not fully elucidated, growing evidence increasingly highlights the central role of microglial activation and subsequent neuroinflammation. These studies employ a diverse range of experimental models to investigate these processes, including human induced pluripotent stem cell (hiPSC)-derived tri-cultures of microglia, astrocytes, and neurons; single-cell RNA sequencing of human cerebrospinal fluid (CSF) microglia and myeloid cells; primary microglia isolated from mice; murine models of HIV infection; brain tissues from adult humans and nonhuman primates infected with HIV-1; and human brain organoids [6,7,8,9,10].

Microglia, the resident immune cells of the brain, a primary target and reservoir for HIV-1 in the central nervous system (CNS) due to several unique features supporting viral persistence [11]. The natural expression of HIV entry co-receptors, including C-C chemokine receptor type (CCR) 3, CCR5, and C-X-C chemokine receptor type 4 (CXCR4), by these cells promotes viral latency. This is achieved through mechanisms such as PR- and Nef-dependent induction of regulated upon activation, normal T cell expressed and secreted/C-C chemokine ligand 5 [12, 13]. Furthermore, compared to other CNS cells like macrophages and astrocytes, microglia maintain lower drug concentrations, exhibit a longer lifespan and a slower division rate, and are capable of extensive brain colonization [11]. These characteristics contribute to their role as both a significant viral reservoir and active mediator of neuroinflammation. Compelling evidence also demonstrates that HIV-1 related proteins (e.g., HIV-1 envelope glycoprotein 120) and RNAs from infected cells act as potent pro-inflammatory stimuli, triggering neurotoxic microglial activation [14, 15]. This activation leads to the release of cytokines, proteases, and reactive oxygen species, regulated by inflammasome activation, cell death pathways, and altered mitochondrial function [14, 15]. Collectively, microglia likely play a key role in maintaining HIV reservoirs and ongoing viral protein expression within the brain, ultimately contributing to neuroinflammation, neuronal damage, and the development of NeuroHIV.

In this review, we explore recent advances in understanding how HIV-1 related factors contribute to microglial activation, the induction of neuroinflammation, and the underlying mechanisms driving neurological impairments in NeuroHIV. Considering the substantial global prevalence of neurological disorders among PLWH, it is imperative to gain a deeper understanding of the pathobiology and identify potential therapeutic targets to develop new strategies for the prevention and treatment of NeuroHIV. To guide interpretation, we adopt an operational hierarchy of microglial signaling in PLWH. MicroRNA (miRNA)-sirtuin 3 (SIRT3), Acyl-CoA synthetase long-chain family member 4 (ACSL4), nuclear factor kappa B (NF-κB) and NLR family pyrin domain containing (NLRP) 3 act as upstream hubs; and ferroptosis, impaired mitophagy, and cellular senescence represent downstream effectors that sustain neuroinflammation. This hierarchy reflects necessity/sufficiency and temporal precedence reported across studies and clarifies which pathways are more upstream or dominant.

Overview of microglia and HIV-1 facrors

Microglia

Microglia, first published in the 1930s, are derived from the yolk sac and are characterized by the expression of the fractalkine receptor and the alpha chain of β(2) integrin Mac-1 [16, 17]. Their development, survival, and function are regulated by the colony-stimulating factor 1 receptor, the transcription factor PU.1, and interferon regulatory factor 8 [18]. However, the specific expression of these markers may vary across species and developmental stages. Microglia are unique from most tissue macrophages due to their distinct developmental origin and self-renewal capacity. Unlike macrophages that originate from hematopoietic stem cells in the bone marrow, microglia arise from precursors within the CNS during embryonic development. Under normal physiological conditions, they are largely self-sustaining, maintaining their population through local proliferation within the CNS, minimizing reliance on circulating monocytes [19, 20]. Studies estimate the lifespan of human cortical microglia to be approximately 4.2 years, suggesting a relatively slow turnover rate under homeostatic conditions. Nonetheless, their self-renewal and proliferation rates are modulated by various factors, including the brain region, disease state, and age, reflecting the dynamic and adaptable nature of microglial populations [18]. Microglia are widely distributed throughout the CNS and account for approximately 5–15% of all brain cells [21]. Notably, microglia exhibit considerable heterogeneous and dynamic changes in terms of genetic profiles, cell colonization, densities, morphology, as well as mobility and motility in the context of health or disease [22].

Microglia exhibit diverse functional states, enabling crosstalk with other CNS cell types and participation in peripheral immunity [22]. Acting as the brain’s first line of defense, microglia recognize pathogens through pattern recognition receptors, enabling them to present antigens, activate immune cells, and initiate protective immune responses within the CNS [23]. However, microglial activation can become detrimental under pathological conditions. For example, in vitro activation induced by Toll-like receptor 4 ligands like lipopolysaccharide leads to the production of pro-inflammatory cytokines and chemokines, resulting in reduced neuronal survival [24]. In HIV-1 infection, elevated levels of pro-inflammatory cytokines, including interleukin (IL)-8, IL-6, monocyte chemotactic protein 1 (MCP-1), and tumor necrosis factor (TNF)-α, have been observed in microglia within the human brain, microglial models, and studies using rhesus macaques [25]. The adoption of a pro-inflammatory phenotype in microglia can be driven by various factors, including the presence of pro-inflammatory mediators, infiltration of peripheral immune cells, pathological deposits (such as tau aggregates), and viral proteins [e.g., proteins trans-activator of transcription (Tat)] [26, 27].

Beyond their immune functions, microglia also perform critical non-immune roles, including synapse formation, pruning, and elimination, thereby regulating synaptic function to support neurogenesis [21]. They achieve these functions through phagocytosis of dying neurons and cellular debris and the secretion of neurotrophic factors and cytokines that modulate synaptic plasticity during both development and adulthood [28]. Moreover, microglia constantly monitor the microenvironment for potential signals in real-time through interactions with astrocytes, neurons, oligodendrocytes, and other immune cells; this is referred to as microglial surveillance [29]. However, as highlighted in other review articles, microglial dysfunction, often involving impaired communication with other cells, can contribute to neurodegeneration [14, 30]. For example, dysregulated microglial pruning can disrupt brain circuitry and serve as an indicator of cognitive decline [31, 32]. Furthermore, interaction with activated microglia can induce astrocytes to adopt a neurotoxic phenotype, impairing their essential support functions for neurons and exacerbating neuroinflammation [33]. Overall, these findings underscore the central role of microglial activation in the pathogenesis of various neurodegenerative diseases, including Alzheimer’s disease, Parkinson’s disease, multiple system atrophy, and viral infections of the brain [14, 27].

HIV-1 viral factors

HIV-1 proviruses may retain the ability to transcribe viral mRNAs and translate viral proteins [33]. The HIV-1 genome encodes 15 distinct proteins, including two structural proteins: Gag (matrix, capsid, nucleocapsid, and p6) for the virion core and Env (gp120 and gp41) for the outer membrane; one protease, Pol (reverse transcriptase, integrase, and protease); four accessory proteins: Vif, HIV-1 viral protein R (Vpr), viral protein U (Vpu) and Nef; and two regulatory proteins: Tat and Rev. Gp120, Tat, Vpr, and Nef are actively secreted by infected cells during HIV-1 infection, even in the presence of effective ART [34]. In addition to viral replication, these proteins can trigger responses and induce cytotoxic and pro-inflammatory effects in neurons, dendritic cells (DCs), microglia, and macrophages, and astrocyte across the CNS, thereby contributing to the development of NeuroHIV [35,36,37].

Additionally, the integrated HIV-1 provirus is approximately 9700 bp in length, and HIV-1 Rev binds directly to the Rev response element, leading to the accumulation of unspliced, partially spliced, and fully spliced RNA species, as well as rare ‘cryptic’ splice donors (5′ splice sites) and acceptors (3′ splice sites) [38]. Moreover, incompletely spliced viral transcripts facilitate their export from the nucleus by interacting with chromosomal region maintenance protein 1 (CRM1). This interaction leads to the formation of the Rev-CRM1-Ras-related nuclear protein (Ran)-guanosine triphosphate (GTP) complex, established through coupling with the GTP-bound form of Ran, a transport cofactor. Subsequently, CRM1 binds to nucleoporins, specifically Nucleoporin 214/Can protein, directing the complex toward the nuclear pore for transport, while fully spliced HIV-1 mRNAs can exit the nucleus without Rev [38]. Substantial evidence indicates that HIV RNAs persist in CSF and CNS cells despite effective ART [39, 40]. Among these species are unspliced transcripts whose nuclear export requires Rev binding to the RRE and CRM1. In this context, HIV-1 intron-containing RNA (icRNA)—the unspliced, intron-retaining transcript that is Rev/RRE-dependent and exported via CRM1—is detectable in previously infected CD4⁺ T cells, macrophages, and microglia. Export requires cis-acting RNA elements; when Rev is provided in trans, cytoplasmic accumulation and post-transcriptional handling of HIV-1 RNA are sensed as a danger signal, activating innate immunity [15, 41, 42]. Additionally, single-stranded RNA oligonucleotides derived from viruses, such as HIV-1, the influenza virus, and hepatitis C virus have been shown to activate immune response via toll-like receptor 7 and 8 [43, 44]. Uridine-rich single-stranded RNA oligonucleotides (ssRNA40) derived from HIV-1 can prompt natural killer cells, and microglia to secrete pro-inflammatory cytokines [45, 46]. These results demonstrate that the continued presence of HIV RNAs in microglia contributes to the ongoing inflammatory state and the development of neurological disorders during ART. HIV-associated inflammation can induce indoleamine 2,3-dioxygenase/Tryptophan 2,3-dioxygenase-mediated tryptophan catabolism to kynurenine (KYN), branching toward kynurenic acid (astrocyte-biased, anti-excitatory) and quinolinic acid (QUIN, microglia-biased, N-methyl-D-aspartate agonist) [47]. Elevated CSF QUIN has been linked to neurocognitive impairment, suggesting a bridge between immune activation and neurotoxic effects [48]. KYN metabolites also signal via NLRP2 inflammasome, potentially interfacing with NF-κB programs [49]. While direct evidence that specific HIV-1 proteins or transcripts drive microglial kynurenine pathway activation remains limited, acknowledging this axis improves completeness and indicates testable crosstalk with the hierarchy above.

The miRNAs and long non-coding RNAs (lncRNAs) and extracellular vesicles (EVs) induced by viral factors

MiRNAs and lncRNAs are two pivotal classes of regulatory RNAs. MiRNAs primarily fine-tune gene expression by post-transcriptionally repressing mRNA translation, while lncRNAs act more broadly through interactions with DNA, RNA, and proteins to regulate processes from chromatin remodeling to protein synthesis [50, 51]. Both classes mediate a complex interplay between host gene regulation and HIV-1, contributing to viral pathogenesis and associated neurodegenerative disorders [52, 53]. EVs are lipid bilayer–enclosed structures released by cells that carry nucleic acids, proteins, and metabolites reflective of their cell of origin. In the central nervous system, glia-derived EVs support neuronal homeostasis under physiological conditions but can become pathogenic during HIV-1 infection and neuroinflammation by delivering inflammatory signals, stress-response proteins, viral small RNAs, HIV proteins, and other neurotoxic mediators that impair neuronal function [54,55,56]. Mechanistically, glutaminase-mediated glutaminolysis and downstream α-ketoglutarate production are essential for pro-inflammatory EV release and microglial activation during HIV-1 infection and immune activation [54, 57]. In addition, HIV-1 Tat inhibits autophagy and proteasomal degradation in microglia and astrocytes, which in turn modulates EV biogenesis pathways and may amplify intercellular propagation of inflammatory signals [58, 59].

In recent years, the role of HIV transcripts in mediating microglial activation has garnered significant attention as a research hotspot in the progression of NeuroHIV, primarily due to their strong induction and sustainment of the inflammatory response.

The molecular mechanisms of HIV-1-related factors in microglial activation and neuroinflammation

HIV-1 Tat -mediated microglial activation

The persistence of HIV-1 reservoirs in PLWH with virological suppression results in the accumulation of HIV-1 Tat [36]. Early work established that Tat induces TNFα, IL-1β, nitric oxide, and increases nitric oxide synthase (NOS) activity and expression in microglia [60, 61]. Building on this foundation, we outline Tat’s effects primarily through miRNA-mediated pathways involving SIRT3, ACSL4, NF-κB, and NLRP3, as well as by impairing mitophagy/autophagy (Table 1). Additional chemokine programs are summarized below.

Table 1 HIV-1 related factors, roels, and molecular mechanism in microglial activation.

HIV-1 Tat-mediated microglial senescence by miRNA-505-SIRT3 pathway

Senescence was initially defined as the cessation of cell division after multiple replication cycles [62] and has expanded to include premature senescence triggered by telomere shortening, oxidative stress, mitochondrial dysfunction, and lysosomal alterations [63]. It features diminished proliferative capacity and increased secretion of pro-inflammatory cytokines and adhesion molecules [64, 65], and has been linked to AD and NeuroHIV [64, 65]. HIV-1 Tat exposure induces a senescence-like phenotype in microglia with elevated senescence markers and pro-inflammatory cytokines [66, 67]. Mitochondrial dysfunction can drive senescence via reactive oxygen species (ROS) accumulation [68, 69], and Tat (± morphine) perturbs mitochondrial function, increasing ROS, protein oxidation, and cytokine release in microglia [60, 70]. SIRT3, a class III HDAC associated with longevity, deacetylates Forkhead box protein O3a (FOXO3a) and promotes transcription of antioxidant enzymes (e.g., manganese superoxide dismutase and catalase), thereby constraining mitochondrial ROS and preserving redox homeostasis [71, 72]. Recent work shows that activating the SIRT3-FOXO3A axis promotes mitochondrial biogenesis and antioxidant enzyme expression [73]. Consistent with this mechanism, Tat upregulates miR-505, which represses SIRT3, leading to ROS accumulation, mitochondrial stress, and a senescence-like microglial phenotype; conversely, SIRT3 overexpression is protective [66]. These observations place the Tat/miR-505/SIRT3 axis upstream of microglial senescence in NeuroHIV (Fig. 1a). Exploring the relationship between senescence markers observed in vitro and their direct impact on in vivo NeuroHIV pathology, is necessary to fully understand how microglial senescence specifically affects neurocognitive disorders in PLWH. These findings may represent promising therapeutic targets, such as miR-505 and SIRT3, for addressing HIV-1 Tat-associated microglial senescence and NeuroHIV.

Fig. 1: Dysfunction of microglia through impaired celluler processes induced by HIV-1 Tat.
Fig. 1: Dysfunction of microglia through impaired celluler processes induced by HIV-1 Tat.
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a HIV Tat-mediated microglial senescence. HIV-1 Tat triggers the miR-505, which negatively regulated the expression of sirtuin(SIRT3). This process may inhibit the expression of antioxidant genes such as manganese superoxide dismutase (MnSOD) and catalase by deacetylating forkhead box O3a (Foxo3a), contributing to mitochondrial oxidative stress and microglial senescence. b HIV Tat-mediated microglial ferroptosis via miR-204-Acyl-CoA synthetase long-chain family member 4 (ACSL4) signaling axis. The upregulation of ACSL4, resulting from the inhibition of miR-204, enhances the synthesis of phospholipid hydroperoxides (PLOOH). Concurrently, the downregulation of glutathione peroxidase-4 (GPX4) exacerbates the accumulation of phospholipid hydroperoxides (PLOOH), supplying fatty acids that promote lipid peroxidation and drive ferroptosis. c HIV Tat-mediated microglial activation by impairing mitophagy. HIV-1 Tat up-regulates mitophagy signaling proteins such as PTEN induced kinase 1 (PINK1), parkin RBR E3 ubiquitin protein ligase (PRKN) and dynamin-1-like protein (DNM1L) by decreasing the mitochondrial membrane potential. These processes impair PRKN-dependent mitophagy and the clearance of damaged mitochondria. d HIV Tat-mediated microglial activation by impairing mitophagy. Methamphetamine and HIV-1 Tat induces microglial autophagy via activation of the nuclear factor erythroid-2-related factor 2 (NRF2)/NAD(P)H:quinone oxidoreductase 1 (NQO1)/heme oxygenase-1 (HO-1) signal pathway.

HIV-1 Tat-mediated microglial ferroptosis via miR-204-ACSL4 signaling axis

Ferroptosis, a regulated form of cell death, has emerged as a relevant process in neurodegenerative disease pathogenesis [74]. During ferroptosis, Acyl-CoA synthetase long-chain family member 4 (ACSL4)-catalyzed arachidonic acid-CoA drives the production of phospholipid hydroperoxides (PLOOH) [75]. Ferritin heavy chain-1 (FTH1) plays an important role in storing iron, while glutathione peroxidase-4 (GPX4) helps to suppress ferroptosis by converting lipid hydroperoxides to lipid alcohols [76]. Iron accumulation, lipid peroxidation, and decreased GPX4 expression, which are characteristic hallmarks of ferroptosis, contribute to inflammation through the induction of oxidative stress and the activation of the high mobility group box-1 protein1-advanced glycosylation end-product-specific receptor signaling pathway and extracellular signal-regulated kinase, respectively [77,78,79]. Microglia are the most iron-rich cells in the CNS [80]. HIV-1 Tat resulted in microglial activation and pro-inflammatory responses by inducing ferroptosis with dramatically increased ACSL4 and FTH1, and decreased GPX4 [27]. The induction of Tat-mediated ferroptosis was observed following the downregulation of miR-204 expression, underscoring the significance of the miR-204-ACSL4 signaling axis (Fig. 1b) [27]. The nuclear factor erythroid-2-related factor 2 (NRF2) can block HIV-1 Tat- and methamphetamine-induced microglia ferroptosis through upregulating ATF4-induced solute carrier family 7a member 11 (SLC7A11) and GPX4 expression [81].

HIV-1 Tat-mediated microglial activation by impairing mitophagy/autophagy

Mitophagy selectively removes damaged mitochondria through a progression from phagophore to autophagosome and then to lysosome, thereby preserving organelle integrity and cellular homeostasis [82]. When this process is impaired, dysfunctional mitochondria accumulate, ROS rises, and inflammatory signaling is engaged—features linked to neurodegeneration [83, 84]. In microglia, HIV-1 Tat upregulates PTEN-induced kinase 1 (PINK1), Parkin RBR E3 ubiquitin protein ligase (PRKN), and dynamin-1-like protein (DNM1L), marking damaged mitochondria for turnover and promoting fission, yet sequestosome 1 (SQSTM1)-dependent flux is blocked, lowering the mitochondrial membrane potential and fostering microglial activation and neuroinflammation (Fig. 1c) [70, 85]. Enhancing the clearance of damaged mitochondria may therefore represent a therapeutic avenue in NeuroHIV.

Beyond mitophagy, macroautophagy also shapes microglial reactivity [86]. Tat, with or without methamphetamine, increases microtubule associated protein 1 light chain 3-II (LC3-II), Beclin-1, and the autophagy-related proteins ATG5 and ATG7. Activation of the NRF2 pathway, including induction of NAD(P)H:quinone oxidoreductase 1 (NQO1) and heme oxygenase-1 (HO-1), promotes autophagic clearance and restrains over-activation [87] (Fig. 1d). Under exposure to Tat, cocaine, or ART, lysosomal dysfunction is observed: lysosomal pH rises, lysosome-associated membrane protein 2 (LAMP2) decreases, and cathepsin D decreases. These alterations coincide with higher levels of Beclin-1, LC3B-II, and SQSTM1 and contribute to neuroinflammation and neurodegeneration [88, 89]. Microglia-specific autophagy also maintains lipid homeostasis, thereby modulating the inflammatory tone relevant to neurodegenerative disease [26, 86, 90].

HIV-1 Tat-induced microglial activation via ionic efflux and miR-223/ miR-124-NLRP3 -dependent pyroptosis

The NLRP3 inflammasome comprises three core components: NLRP3, a danger-sensing receptor; ASC, an adaptor that bridges NLRP3 to caspase-1; and caspase-1, the effector protease that processes IL-1β/IL-18 and activates gasdermin D (GSDMD) to induce pyroptosis [91]. NLRP3 activation proceeds in two stages. Priming is initiated when pattern-recognition receptors detect pathogen- or damage-associated molecular patterns and is reinforced by inflammatory cytokines; activation is then triggered by diverse microbial or sterile stimuli and is typically accompanied by potassium (K+) efflux and other ionic changes [91]. Ca2+ and cAMP can facilitate NLRP3 activation via the calcium-sensing receptor (CaSR) [92]. In HIV-specific contexts, Tat elevates intracellular Ca2+ by engaging N-methyl-d-aspartate receptors (NMDARs) and activating the NOS/sGC/PKG pathway in mixed glial–neuronal cultures, thereby potentiating neurotoxicity [93,94,95,96]. Tat also mobilizes Ca2+ from IP3-sensitive stores and activates novel PKC isoforms, enhancing TNF-α production across macrophages, neurons, and astrocytes [97, 98]. In BV2 microglia, ATP/P2X7-dependent Ca2+ influx gates the SUR1–TRPM4 channel, promoting Na+ entry, membrane depolarization, and secondary K+ efflux—a canonical trigger for NLRP3 inflammasome assembly [99]. Collectively, these HIV-related mechanisms link Ca2+ signals (for activation via CaSR and Ca2+ mobilization) with K+ efflux (as the proximal activation signal), integrating ion fluxes with microglial sensing and inflammasome priming/activation. Recent studies further connect sustained Ca2+ entry (via NMDAR or P2X7) to loss of mitochondrial membrane potential, increased mitochondrial ROS, and suppression of mitophagic clearance, collectively potentiating NLRP3 activation in microglia under HIV-related conditions [100].

Consistent with the ion-centric model above, HIV-1 Tat can upregulate NLRP3, promote ASC oligomerization and caspase-1 activation, and augment IL-1β release by inhibiting miR-223, thereby contributing to microglial activation [101] (Fig. 2a). In parallel, Tat-mediated downregulation of miR-124 increases SREBP2 expression and lipid-droplet accumulation in microglia, a metabolic context that further activates the NLRP3 inflammasome [102]. Once assembled, the NLRP3 complex triggers GSDMD-mediated pyroptosis, resulting in the release of pro-inflammatory cytokines and amplification of neuroinflammation [103,104,105,106] (Fig. 2a).

Fig. 2: Activation of microglia by NLRP3 inflammasome or NF-κB pathway induced by HIV-1 Tat.
Fig. 2: Activation of microglia by NLRP3 inflammasome or NF-κB pathway induced by HIV-1 Tat.
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a HIV-1 Tat mediated the PYD domains-containing protein 3 (NLRP3) inflammasome activation by inhibiting miR-223. b HIV-1 Tat mediated the nuclear factor-kappaB (NF-κB) pathway through the upregulation of miR-34a, which subsequently downregulates the family member NLR caspase recruitment domain (CARD) containing 5 (NLRC5). This cascade ultimately leads to an increased expression of NF-κB p65, thereby activating NF-κB signaling.

HIV-1 Tat-induced microglial activation via miRNA-34a-NF-κB pathway

The NF-κB system, encompassing canonical and non-canonical branches, mediates inflammatory gene induction. In the canonical branch, IKKβ phosphorylates IκBα bound to p65/p50 heterodimers, targeting IκBα for proteasomal degradation; the liberated p65/p50 complex translocates to the nucleus and drives transcription [107,108,109]. Consistent with this framework, Tat activates NF-κB and promotes pro-inflammatory cytokine release in microglia [110]. At the molecular level, Tat upregulates miR-34a, which suppresses CARD-containing adaptors and increases NF-κB p65, thereby augmenting NF-κB signaling and triggering a pro-inflammatory microglial response that contributes to neuroinflammation [111] (Fig. 2b).

Other mechanisms involved in Tat-induced microglial activation

Tat also engages epigenetic and chemokine programs that reinforce microglial activation. It promotes DNA methylation of pro-inflammatory genes via the MECP2/STAT3 axis or the promoter DNA hypermethylation of miR-124 [112, 113]. In a COX-2–dependent manner, Tat induces CCL2/MCP-1, IL-1β, TNF-α, and iNOS; activation of NF-κB and the FABP4/NF-κB feedback loop facilitates recruitment of immune cells to the CNS, amplifying inflammation [114, 115]. Through MAPK and PI3K signaling, Tat further elevates chemokines: ERK1/2 and PI3K increase CCL2 and CCL4; p38 MAPK drives CXCL8 and CCL3; and combined ERK1/2, PI3K, and p38 MAPK signaling upregulates CXCL10 in microglia [116].

HIV-1 gp120-mediated microglial activation

Gp120, a glycoprotein on the surface of HIV-1, contributes significantly to the pathogenesis of HAND and leads to cognitive impairment and other neurological complications in PLWH (Table 1). Understanding the mechanism of gp120 in microglial activation is crucial for developing targeted therapeutic interventions to mitigate its effects on the CNS.

HIV-1 gp120-mediated microglial activation via CXCR4-NLRP3-dependent pyroptosis

During HIV-1 infection, the released gp120 activates microglia, resulting in rapid inflammasome activation. This process leads to increased expression of COX-2 and iNOS, as well as the release of various cytokines [117, 118]. Another study also showed that gp120 alone or together with methamphetamine activate NLRP3 and promote inflammatory response in microglia [37, 119]. Moreover, HIV-1 gp120 upregulated Kv1.3 expression via CXCR4 and p38-MAPK signaling (Fig. 3) [120,121,122]. The binding of gp120 to CXCR4 causes both NF-κB activation and K+ efflux. CXCR4 signaling activates NF-κB, which upregulates the transcription of NLRP3 and pro-IL-1β, preparing the stage for inflammasome assembly (Fig. 3). Additionally, K+ efflux triggers NLRP3 inflammasome assembly, caspase-1 activation, and IL-1β release and pyroptosis[123, 124]. These data demonstrate that HIV-1 gp120 triggers a pro-inflammatory response and neuropathology via CXCR4-NLRP3-dependent pyroptosis (Fig. 3, ). However, further elucidation of the connection between Kv1.3 and the NLRP3 inflammasome in gp120-mediated microglial activation could deepen our understanding of NeuroHIV [125].

Fig. 3: Diverse HIV-1 factors induce microglial activation through distinct pathways involving in NLRP3 inflammasome and NF-κB signaling.
Fig. 3: Diverse HIV-1 factors induce microglial activation through distinct pathways involving in NLRP3 inflammasome and NF-κB signaling.
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a NLRP3 Inflammasome Activation: HIV-1 gp120 enhances Kv1.3 expression via C-X-C chemokine receptor type 4 (CXCR4) and p38-mitogen-activated protein kinase (p38-MAPK) signaling, leading to the activation of the NLRP3 inflammasome. The viral protein Vpr directly activates the NLRP3 inflammasome. HIV-1 ssRNA40 triggers NLRP3 inflammasome activation through toll-like receptor (TLR) 7/8-mediated mitochondrial damage. b NF-κB Pathway Activation: Binding of gp120 to CXCR4 activates the nuclear factor-kappa B (NF-κB) pathway, which then induces the transcription and expression of NLRP3 and pro-IL-1β. HIV-1 gp120 also facilitates microglial activation through the purinergic 2×7 receptor (P2X7R)-mediated NF-κB signaling pathway. Gp120 activate microglia by TLR 2-NF-κB signaling and by the direct binding of p62 and protein kinase C (PKC) through the IKK/NF-κB signaling pathway.

HIV-1 gp120-mediated microglial activation by NF-κB pathway

Another study has shown that gp120 induces over-activation of microglia by up-regulating P2X7R and promoting the formation of a p65 homodimer (Fig. 3) [126, 127]. As reported, ATP can activate P2X7R by pannexin channels, subsequently activate NF-κB pathway through inducing the translocation of NF-κB and facilitating phosphorylation of IκB [128, 129]. These processes may result in NF-κB activation and maybe promote the expression of IL-1β, IL-6 and TNF-α in microglia (Fig. 3) [127, 129]. However, the roles of P2X7R and NF-κB in microglia-associated neurotoxicity require more comprehensive understanding in HAND in future studies. Two other studies showed that gp120 activates microglia by TLR2-NF-κB signaling, and by the direct binding of p62 and PKC through the IKK/NF-κB signaling pathway (Fig. 3) [130, 131].

Other HIV-1-related proteins on the microglial activation

While Tat and gp120 have received considerable attention, other HIV-1 proteins like Vpr and Nef are also known to play a role in microglial activation and inflammation. However, research exploring their specific mechanisms is still evolving [132,133,134]. This review provides a summary of the current research (Table 1). After Vpr stimulation, microglia exhibited increased translocation of inflammasome scaffold proteins from the nucleus to the cytoplasm, along with elevated levels of NLRP3, caspase-1, and IL-1 in both in vivo and in vitro settings [133] (Fig. 3). Soluble Vpr released from infected microglia activates HIF-1α and perturbs neuronal–glial homeostasis, driving oxidative stress, elevation of intracellular Ca²⁺, excess ROS, and disruption of neuronal glutamatergic signaling [135, 136]. Meanwhile, Nef promotes neuropathology by upregulating CCL2 expression in microglia and augmenting IL-6 and IL-8 production in astrocytes via the PI3K/Akt/PKC, p38 MAPK, NF-κB, C/EBP, and AP-1 signaling pathways [137,138,139]. Nef also activates NADPH oxidase through the Vav/Rac/PAK pathway in phagocytes, amplifying neuroinflammation and promoting myelin injury and neuronal damage [134, 140]. Other studies have indicated that Vpr and Nef, or Nef and Tat in conjunction with gp41 exposure in microglia, stimulate the production of cytokines and chemokines, thereby contributing to the neuropathogenesis of HIV-1 [81, 141].

The roles of HIV-1 RNAs on microglia

HIV-1 icRNA-mediated microglial activation via Rev-CRM1-dependent nuclear export

HIV-1 icRNA has been shown to promote the release of type I interferon (IFN-I) and inflammatory cytokines in DCs, macrophages, and CD4+ T cells [142]. Further studies have implied that HIV-1 icRNA is sensed and signals via the mitochondrial antiviral signaling protein (MAVS) pathway, inducing IFN-I-dependent pro-inflammatory responses in macrophages [41]. Inhibition of transforming growth factor beta-activated kinase 1, NF-κB, and non-receptor tyrosine kinases, which are involved in MAVS activation, resulted in reduced Siglec1 expression and interferon-inducible protein-10 secretion in macrophages [41, 143]. These findings reveal the causative mechanisms of IFN-I-dependent pro-inflammatory response even in the absence of HIV-1 replication in PLWH [41, 142]. Recent research has also reported that HIV-1 icRNA could induce pro-inflammatory responses in microglia via Rev-CRM1-dependent nuclear export [15]. It also induces NLRP1 inflammasome activation and IL-1β secretion in macrophages and microglia independently of RLR and endosomal TLR pathways [144]. Rev-CRM1-dependent nuclear export and cytosolic sensing of HIV-1 icRNA trigger pro-inflammatory responses in productively infected microglia [15].

HIV-1 ssRNA40-mediated microglial activation via NLRP3 inflammasome

HIV-1 ssRNA40, as a potent trigger, is sufficient to prime NLRP3 inflammasome activation and the secretion of IL-1β, IL-18, TNF-α and IL-1α. Exposure to HIV-1 ssRNA40 induces the upregulation of pro-IL-1β, pro-IL-18, and NLRP3 through TLR7/TLR8. Activation of the NLRP3 inflammasome increased ROS generation with a loss of mitochondrial membrane potential and mitochondrial integrity in human microglial cells, independent of virus replication. By inhibiting autophagy/mitophagy with reduced optineurin, p62, TANK-binding kinase 1 phosphorylation, and PRKN expression, prolonged exposure of microglial cells to ssRNA40 amplified NLRP3 inflammasome activity, leading to increased inflammatory cytokine and ROS production and pyroptosis [46] (Fig. 3).

The role of miRNAs, lncRNAs, and EVs induced by viral factors in microglial activation and inflammatory signaling

The role of miRNAs in microglial activation

The roles and mechanisms of specific microRNAs—including miR-204, miR-124, miR-505, and miR-34a—have been previously integrated into discussions of HIV-1 Tat-mediated microglial activation. Within this context, several Tat-responsive miRNAs critically influence innate immune signaling and redox homeostasis. For instance, miR-32 disrupts antiviral control by directly inhibiting TRAF3 and the downstream IRF3/IRF7 pathway [145]. Furthermore, Tat-induced suppression of miR-17 elevates NOX2/NOX4 levels, thereby increasing ROS production and augmenting microglial activation and cytokine release [146]. These findings collectively highlight a microRNA-driven mechanism underlying Tat-induced neuroinflammation.

The role of IncRNAs in microglial activation

HIV-1 Tat also engages lncRNA circuits that converge on chemokine signaling and neuronal homeostasis. Tat upregulates lncRNA Xist, which sponges miR-124, leading to CCL2 overexpression and microglial activation [147]. In parallel, Tat increases lncRNA-U1, which modulates the neuropeptide B/W receptor 1 locus and disrupts neuronal homeostatic signaling [52].

The role of EVs in microglial activation

EVs have a dual and consequential role in NeuroHIV. As potential biomarkers, CSF-derived EVs from neurons and glia exhibit distinct protein signatures that show promise for identifying cognitive impairment in PLWH [56]. Mechanistically, EVs act as delivery vehicles for neurotoxic cargo. Microglia- and astrocyte-derived EVs can carry HIV Nef and Tat; EV-associated Nef impairs the blood–brain barrier, induces oxidative stress, promotes Alzheimer’s-like pathology, and contributes to axonal degeneration, whereas EV-associated Tat directly causes neurite shortening and neuronal death [59, 139, 148,149,150,151]. EVs also mediate indirect toxicity by transferring miRNAs (e.g., miR-29b and miR-7) from astrocytes to neurons, thereby suppressing neuroprotective factors and disrupting synaptic integrity—effects that are potentiated by morphine [152, 153]. Additionally, Tat-conditioned microglial EVs enriched for NLRP3 convey pro-inflammatory signals and contribute to synaptodendritic injury, further impairing neuronal structure and function [58]. Taken together, EV trafficking furnishes a conduit for cell crosstalk, amplifies microglial activation and neuroinflammation, and links viral proteins, non-coding RNAs, and inflammatory mediators to progressive CNS pathology in NeuroHIV.

HIV-1 factors—including Tat, gp120, Vpr, Nef, viral RNAs, and related miRNA, IncRNA and EVs—collaboratively trigger pathogenic microglial responses, driving neuroinflammation and neurotoxicity in HAND through several converging pathways (Table 1). These include: 1) oxidative stress and mitochondrial damage, where viral factors induce ROS accumulation and mitochondrial dysfunction, leading to cellular damage, impaired autophagy/mitophagy, and primed inflammatory pathways; 2) NLRP3 inflammasome activation, triggered by Tat, gp120, and viral RNAs, which is exacerbated by ROS, ion flux changes, and impaired autophagy, with NF-κB acting as a crucial priming signal for pyroptosis and pro-inflammatory cytokine release; 3) NF-κB signaling, consistently activated by Tat, gp120, and Nef, which orchestrates the expression of inflammatory genes and inflammasome components, amplifying the inflammatory cascade; and 4) senescence and ferroptosis, both induced by Tat. Common upstream events, such as impaired autophagy/mitophagy and ROS accumulation, predispose microglia to these forms of dysfunction and death, thus contributing to a neurotoxic phenotype. Therefore, overlap is expected under sustained stimulation. Notably, senescence-associated changes in iron handling and lipid metabolism may feedback over time to lower the threshold for ferroptosis. However, their precise temporal sequence requires further investigation. While distinct mechanisms such as miRNA regulation and EVs transfer add complexity, these converging pathways collectively sustain a hazardous cycle of microglial activation, oxidative stress, programmed cell death, and chronic inflammation, ultimately driving neurodegeneration in HAND. Understanding these intricate interactions is essential for developing effective therapies.

Overview of the roles of microglial activation and HIV-1 factors in NeuroHIV

Microglial cells are primary target cells of HIV-1 infection and serve as reservoirs, contributing to the persistence of the virus in CNS. The connection between HIV-1 proteins, microglial activation, and neuronal cell death has been demonstrated, highlighting the crucial role of dysfunctional microglia in the development of NeuroHIV through various mechanisms.

First, microglia are considered one of the primary sources of viral proteins and RNAs within the CNS. These viral factors contribute to the progression of NeuroHIV by causing both “direct injury” and “bystander injury”. “Direct injury” occurs when gp120 and Tat directly damage neurons, for example, through impaired mitophagy [143]. Tat leads to neuronal death by activating calcium release from IP3-sensitive intracellular pools, causing endolysosomal dysfunction and dendritic impairments, which ultimately contribute to spatial memory impairment and premature brain aging [154,155,156,157,158].

In terms of “bystander injury”, viral factors induce neuronal toxicity through inflammatory processes. Tat and gp120 disrupt the BBB by downregulating tight junction proteins and promoting endothelial cell apoptosis [159,160,161]. This disruption promotes chemokine release in HIV-infected glial cells, which in turn recruits peripheral immune cells and induces a pro-inflammatory response within glial and peripheral immune cells [162,163,164]. For instance, Tat mediates astrocyte senescence and the production of ROS and pro-inflammatory cytokines, while gp120 and methamphetamine induce apoptosis [165, 166]. As for microglia, HIV-1 Tat and gp120 proteins promote cell loss and pro-inflammatory response via NLRP3 or NF-κB, which is strongly associated with NeuroHIV [27, 125]. In oligodendrocytes, Tat induces apoptosis, myelin damage, and white matter damage [94, 167, 168]. The dysfunction of neurons, astrocyte, and other cells exacerbates microglial activation, neuroinflammation, and NeuroHIV [169, 170].

Beyond the established neurotoxic roles of Tat and gp120, other HIV-1 components contribute to neurotoxicity through distinct mechanisms. Soluble Vpr released from infected microglia induces oxidative stress, disrupts cellular signaling, and impairs neuronal glutamate transmission [135, 137]. Nef promotes neuropathology by upregulating CCL2 in microglia and enhancing IL-6 and IL-8 production in astrocytes [137,138,139], while also activating NADPH oxidase in phagocytes, thereby exacerbating neuroinflammation, myelin damage, and neuronal injury [134, 140]. Concurrently, HIV-1 icRNA activates macrophages and microglia [144, 171] and triggers pro-inflammatory responses in productively infected microglia [15]. Similarly, HIV-1 ssRNA40 activates microglia, natural killer cells, dendritic cells, and macrophages [46, 172,173,174,175]. Furthermore, HIV-1 Tat, upon astrocytic exposure, induces the release of EV-encapsulated miR-7, which neurons subsequently internalize. This uptake leads to the downregulation of neuronal neuroligin 2 and ultimately results in synaptic alterations [153].

These viral factors and transcripts amplify cell–cell crosstalk across glia and neurons. Microglial cytokines and chemokines potentiate astrocyte activation, while astrocyte-derived mediators feed back to sustain microglial reactivity; together they intensify synaptic dysfunction and neuronal vulnerability. This reciprocity fosters intermittent cycles of viral reactivation and silencing in microglia and augments inflammatory signaling in macrophages, microglia, and astrocytes, creating a self-sustaining pro-inflammatory milieu in the CNS. The resulting positive-feedback loop perpetuates and intensifies neuroinflammation, thereby driving NeuroHIV pathogenesis [133, 136, 137]. In summary, these findings highlight the triad of microglia–astrocytes–neurons as an integrated network through which HIV-1 factors propagate CNS pathology (Fig. 4).

Fig. 4: Overview of the roles of microglial activation and HIV-1 factors in NeuroHIV.
Fig. 4: Overview of the roles of microglial activation and HIV-1 factors in NeuroHIV.
Full size image

This figure illustrates the multifaceted roles of various brain cells in the pathogenesis of NeuroHIV, driven by HIV-1 factors and microglial activation: a Microglia activation: HIV-1 replication and transcription, the production of HIV-1 factors and associated miRNA, IncRNA and EVs, and proinflammatory cytokines, and interaction with other cells in the brain. b Neuron: neuronal death, endolysosomal dysfunction, and dendritic impairments, contributing to neurodegeneration; c The blood-brain barrier (BBB): reducing the expression of tight junction proteins, and inducing endothelial cell apoptosis. d Astrocytes: apoptosis, cellular senescence, and the release of proinflammatory cytokines; e Oligodendrocytes: apoptosis, myelin sheath damage, and white matter injury; Immune Cells: a proinflammatory environment in the brain; (f) Immune cells: the production of proinflammatory cytokines. Collectively, these cellular dysfunctions create a proinflammatory environment in the brain, leading to the spectrum of clinical manifestations of NeuroHIV, including dementia, mild neurocognitive disorder, and asymptomatic neurocognitive impairment.

Challenges and future aspects

Challenges in the experimental tools to study the exact mechanism of HIV-1-related factors on microglial activation

Experimental model limitations: many current models fail to replicate the complex microenvironment of the CNS, which often results in incomplete or potentially misleading interpretations of activation mechanisms. First, the representation of the CNS microenvironment in existing models is insufficient. While immortalized cell lines and conventional animal models are valuable, they do not accurately replicate the complex physiological and biochemical features of the human CNS in vivo. For instance, the interactions between neurons, glial cells (including microglia), and the extracellular matrix are intricately regulated and differ substantially from those observed in simplified laboratory settings. Moreover, species differences between animal models and humans complicate the translation of findings. Immune responses and neurobiological pathways in rodents may not fully mirror those in humans, leading to discrepancies in data interpretation and the effectiveness of potential therapeutic strategies. Second, accessing human brain tissue presents both ethical and logistical barriers that further complicate research. Restricted access limits researchers’ ability to study these cells in conditions that closely resemble in vivo environments, hindering the exploration of HIV-1-related factors in a relevant biological context. Viral factor representation: the representation and complexity of viral factors in experimental models are often inadequate. The viral factors used in in vitro experiments and animal studies frequently do not accurately mirror the structure, concentration, and dynamics present in actual HIV-1-infected individuals. Maintaining the correct conformation, concentrations, and post-translational modifications of HIV-1 proteins in experimental settings is particularly challenging. Furthermore, the complexity of HIV-1 is compounded by the existence of numerous viral subtypes that vary across different geographical regions. These variations can significantly influence the virus’s behavior, pathogenicity, and response to therapeutic interventions. Models that rely on specific viral factors may lack the generalizability needed to inform clinical outcomes effectively, potentially overlooking critical differences in viral dynamics and host interactions. This discrepancy can skew research findings. Given these challenges, there is an urgent need for the development of new experimental models that more accurately reflect the human CNS environment, as follows: 1) Innovative in vitro models: Developing advanced 3D culture systems or organoid models that replicate the cellular architecture and microenvironment of the CNS could offer more relevant insights into HIV-1 interactions with microglia and other brain cells. Recent approaches have adopted pluripotent stem cell cultures and 3D brain organoid systems that incorporate microglia derived from hematopoietic progenitor cells into these organoids [10, 176, 177]. Three-dimensional brain organoids derived from human iPSCs, augmented with HIV-1–susceptible microglia, recapitulate key features of human cellular diversity and permit direct visualization of neuroinvasion, including directed migration of infected microglia into neural tissue. In parallel, humanized mouse models with peripheral immune reconstitution and microglial engraftment enable evaluation of neuroinvasion, reservoir dynamics, and microglia-targeted interventions under systemic antiretroviral exposure. 2) Humanized animal models: Creating humanized mouse models that incorporate human CNS components and immune systems may help bridge the gap between animal studies and human biology. 3) Characterization of viral factors: Investigating the precise structure and concentration of HIV-1-related factors in HIV-1-infected patients is essential.

While considerable research has focused on Tat and gp120 in microglial cells, more detailed and in-depth studies are still required. Additionally, although Vpr, Nef, and HIV-1 icRNA, ssRNA40, miRNA, IncRNA and EVs play significant roles in microglial activation, current research on these factors remains limited. Therefore, it is essential to further investigate the roles of these factors. Addressing these gaps is crucial for enhancing our understanding and developing effective treatments for NeuroHIV.

Challenges in the therapy of NeuroHIV

As ART alone is insufficient to fully suppress HIV-1 replication, including the transcription and translation of HIV-1 provirus in both T-cell reservoirs and non-CD4 T-cell reservoirs, there is a critical need to develop new brain-penetrating agents that can effectively target both CNS and peripheral immune cells to simultaneously silence HIV-1 and reduce the risk of neuroinflammation. Currently, eliminating the latent HIV-1 reservoir to achieve a functional cure for HIV/AIDS remains a top priority. Immunotherapies such as broadly neutralizing antibodies, HIV-specific CAR-T cells, and immune-checkpoint blockers are particularly attractive for inducing a sustained HIV-1-specific immune response [178,179,180]. However, the safety and efficacy of these treatments in the context of NeuroHIV require thorough investigation, particularly due to CNS‑related toxicities. Understanding the biology of the latent HIV-1 reservoir is critical for developing effective curative strategies. Research on latency mechanisms and the interplay between HIV-1 and host immune responses will be instrumental in designing targeted therapies. Additionally, advancements in gene-editing technologies, such as CRISPR/Cas9, show promise for excising proviral DNA from the host genome [181]. Although developing effective curative interventions is challenging, continued progress in elucidating the biology of the latent HIV-1 reservoir will enhance our ability to achieve a functional cure.

As ART alone is insufficient to fully suppress HIV-1 replication, including the transcription and translation of the HIV-1 provirus, there is a critical need to develop new brain-penetrat agents that can effectively target both the CNS and the peripheral immune system to silence HIV-1 and reduce the risk of neuroinflammation. Recent research has shown that the nerve growth factor IB-like receptor (Nurr1/NR4A2) and the glucocorticoid receptor (GR, NR3C1) not only effectively silence HIV-1 in reactive microglial cells by repressing HIV-1 gene expression, but also induce a quiescent state in these cells [182, 183]. Additionally, epigenetic-related molecules, including histone lysine methyltransferases and histone deacetylases are involved in HIV-1 post-integration latency. For instance, lysine 4 of histone H3 and histone H3 lysine 27 trimethylation were found to be enriched in latent HIV-1 chromatin in both microglial cells and CD4+ T cells, suggesting that targeting these epigenetic pathways may suppress HIV-1 latency and microglial activation [184, 185]. Furthermore, several approaches aim to target transcription and/or RNA export to counteract the effects of proinflammatory cytokines and inhibit viral protein synthesis: 1) Inhibition of Tat protein expression through didehydro-cortistatin A, 2) Inhibition of HIV integration and relocalization of the residual virus by Lens epithelium-derived growth factor p75, 3) Small interfering RNA (siRNA) silencing HIV gene transcription by recruiting Argonaute1, histone deacetylase 1, and histone methyltransferase, 4) Heat shock protein 90 inhibitors, Janus kinase (Jak)-STAT inhibitors, kinase inhibitors, and bromodomain protein 4 regulators, 5) CRISPR/Cas9-guided RNA [100, 186,187,188]. However, it remains to be investigated whether these agents or RNA molecules can effectively cross the blood-brain barrier and safely inhibit HIV-1 expression in microglia.

Recent research into microglia and HIV-1 factors has underscored the central mechanisms involved in this process include NLRP3 inflammasome activation (e.g., GSDMD, GSDME, NEK7, ASC, caspase-1 and IL-1β) and NF-κB signaling pathways (e.g., NF-κB, P2X7R, IKK, nuclear translocation inhibitors, DNA binding inhibitors), along with cellular processes such as autophagy (e.g., PINK1, Parkin and DNM1L), ferroptosis (e.g., FTH1, ACSL4, miR-204, and GPX4), and senescence (e.g., miR-505 and SIRT3), highlighting critical targets for further investigation and therapeutic intervention in NeuroHIV. In preclinical CNS models, multiple strategies targeting the NLRP3 inflammasome axis have shown promise. These include direct NLRP3 inhibitors (e.g., CY-09, MCC950, OLT1177/dapansutrile, oridonin, INF39, tranilast), blockade of pyroptosis or downstream effectors (e.g., disulfiram, dimethyl fumarate, maresin-1), and interference with adaptor or cytokine pathways such as ASC, NEK7, caspase-1, and IL-1β (e.g., lycorine, entrectinib, VX-765/X-740, canakinumab). Across diverse CNS disease contexts, these agents have reduced inflammatory readouts and improved functional outcomes in vivo [189,190,191]. Furthermore, some CNS-penetrant NLRP3 inhibitors have entered phase human trials for neuroinflammatory diseases and neurodegenerative diseases, such as VTX3232, Emlenoflast, NT-0796. Emlenoflast and NT-0796 were announced safe and well-tolerated, suggesting promising clinical efficacy in adult patients [153,154,155, 192,193,194]. Although minocycline showed anti-inflammatory and neuroprotective effects preclinically and crosses the blood–brain barrier [195, 196], randomized clinical trials in HAND did not improve cognitive benefit [197]. We therefore present minocycline as negative clinical evidence that nonetheless informed microglial-targeting hypotheses rather than as an effective therapy. These findings indicate the transition from preclinical studies to clinical applications remains a challenge. Several constraints limit brain-penetrant anti-inflammatory agents in NeuroHIV/HAND. First, pathway complexity raises on- and off-target risks when modulating ASC, caspase-1, GSDMD, IL-1β, NF-κB, P2X7R, IKK, FTH1, ACSL4, miR-204, or GPX4, and microglia-specific target engagement is difficult to confirm. Second, restricts distribution and is subject to active efflux, yielding heterogeneous brain exposure across regions and patients. Third, most inhibitors of NLRP3, NF-κB, autophagy, ferroptosis, or senescence remain preclinical and lack regulatory approval, and there is a paucity of validated pharmacodynamic biomarkers in humans (e.g., CSF IL-1β/IL-18, GSDMD-N, ex vivo NLRP3 assays) to confirm target engagement. Additional translational hurdles include potential drug–drug interactions with antiretroviral therapy, uncertainty in therapeutic timing relative to disease stage, and variability of cognitive endpoints in HAND trials. Opportunities for progress include rational brain-exposure design with efflux avoidance, development of microglia-directed delivery systems, and incorporation of human target-engagement biomarkers into early-phase studies. Notably, some nanomaterials can themselves activate NLRP3 in the CNS [198], underscoring the need for careful nanoengineering and mechanistic evaluation. Drug repurposing remains attractive when compounds already possess favorable pharmacokinetic properties and demonstrable BBB penetrance. For instance, microRNAs—particularly microRNA-7—and nanobodies may exhibit remarkable therapeutic potential [199]. This is especially important for biologics that can cross the blood-brain barrier to effectively control inflammatory injury and mitigate the corresponding deleterious effects on the brain and peripheral tissues.

Outlook

This review focused on how HIV-1 proteins and RNAs activate microglia. However, further research is needed to fully understand these mechanisms and their effects on other CNS and blood cells. Understanding HIV-1 factors could improve our knowledge of the complex disease process and lead to new treatments targeting harmful bystander effects, independent of viral replication.

Conclusion

In conclusion, this review provides a comprehensive summary of recent molecular research shedding light on the complex mechanisms through which HIV-1-related factors—such as viral proteins and RNAs—mediate microglial activation, leading to neuroinflammation and the development of NeuroHIV. By highlighting the various pathways involved, including NLRP3 inflammasome activation, NF-κB signaling, and autophagy/mitophagy dysfunction, this review aims to inspire further investigation into these intricate molecular processes in the absence of active viral replication in the brain.