Table 1 The number of ADAR target sites found in different gene features subclassified by robustness and by edit type.
From: Genome and transcriptome mechanisms driving cephalopod evolution
Edit type | ||||||||
|---|---|---|---|---|---|---|---|---|
Robustness | Edit_type | 5′ | Rec | Syn | SJ | Intron | 3′ | Total |
>25% editing (Robust) | Neural | 1646 | 13,965 | 4854 | 78 | 8728 | 9467 | 38,738 |
Ubiq-High | 56 | 206 | 28 | 10 | 1049 | 1022 | 2371 | |
Ubiq-Low | 101 | 414 | 231 | 6 | 537 | 609 | 1898 | |
Ubiq-Med | 322 | 519 | 355 | 22 | 4924 | 5327 | 11,469 | |
Other | 82 | 189 | 60 | 3 | 1500 | 210 | 2044 | |
Total robust | 2207 | 15,293 | 5528 | 119 | 16,738 | 16,635 | 56,520 | |
<25% editing (Not robust) | Neural | 1024 | 8303 | 4641 | 42 | 3568 | 6175 | 23,753 |
Ubiq-Low | 4368 | 53,182 | 30,971 | 268 | 11,099 | 30,273 | 130,161 | |
Ubiq-Med | 60 | 139 | 123 | 11 | 642 | 1518 | 2493 | |
Other | 103 | 165 | 71 | 4 | 605 | 142 | 1090 | |
Total not robust | 5555 | 61,789 | 35,806 | 325 | 15,914 | 38,108 | 157,497 | |
TOTAL | 7762 | 77,082 | 41,334 | 444 | 32,652 | 54,743 | 214,017 | |
