Fig. 3: MD simulation of the adhesion events of GlueCO2– onto the surface of THDGTP*. | Nature Communications

Fig. 3: MD simulation of the adhesion events of GlueCO2– onto the surface of THDGTP*.

From: Reconstitution of microtubule into GTP-responsive nanocapsules

Fig. 3: MD simulation of the adhesion events of GlueCO2– onto the surface of THDGTP*.

a Three laterally assembled THDGTP* units ([THDGTP*]3) in MTGTP* as a partial model of NS. b An equilibrated MD snapshot of \({{{\mathrm{Glue}}}}^{{{{\mathrm{CO}}}}_2-}\). c, d The outer (c) and inner (d) views of [THDGTP*]3 hybridized with 30 equivalents of \({{{\mathrm{Glue}}}}^{{{{\mathrm{CO}}}}_2-}\). e, f The outer (e) and inner (f) views of [THDGTP*]3 with its electrostatic surface potential in the absence (upper) and presence (lower) of 30 equivalents of hybridized \({{{\mathrm{Glue}}}}^{{{{\mathrm{CO}}}}_2-}\). Negative and positive potential areas are colored in red and blue, respectively. g The percentage of hydrophobic solvent-accessible surface area in the absence (47.5 ± 0.5; red) and presence (56.7 ± 2.0; blue) of 30 equivalents of hybridized \({{{\mathrm{Glue}}}}^{{{{\mathrm{CO}}}}_2-}\). Bars represent mean values ± SD from 2000 data points. h, i [THDGTP*]3 observed from the top view (h) and its angle distributions (i) in the absence (red) and presence (blue) of 30 equivalents of hybridized \({{{\mathrm{Glue}}}}^{{{{\mathrm{CO}}}}_2-}\). j Radial distribution functions g(r) of the Gu+ groups in \({{{\mathrm{Glue}}}}^{{{{\mathrm{CO}}}}_2-}\) with carboxylates (blue) and non-ionic hydroxyl groups (gray) on the [THDGTP*]3 surface, and the carboxylate at the focal core of \({{{\mathrm{Glue}}}}^{{{{\mathrm{CO}}}}_2-}\) (red). k Schematic illustration of a possible adhesion event of \({{{\mathrm{Glue}}}}^{{{{\mathrm{CO}}}}_2-}\) onto NSGTP/GTP* and its effects on the features of NSGTP/GTP*. The Gu+ groups in \({{{\mathrm{Glue}}}}^{{{{\mathrm{CO}}}}_2-}\) form a salt bridge with carboxylates on the NSGTP/GTP* surface and at the focal core of \({{{\mathrm{Glue}}}}^{{{{\mathrm{CO}}}}_2-}\), and the \({{{\mathrm{Glue}}}}^{{{{\mathrm{CO}}}}_2-}\)-based polymeric network thus formed through this process increases the hydrophobicity of the NSGTP/GTP* surface, making NSGTP/GTP* more flatten.

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