Table 1 Summary statistics of the four assembled jujube genomes
From: Analyzes of pan-genome and resequencing atlas unveil the genetic basis of jujube domestication
Indicator | Z95 | Z94 | Z203 | S21 |
|---|---|---|---|---|
Assembled genome size (Mb) | 395.06 | 387.23 | 391.88 | 391.80 |
Estimated genome size (Mb) | 411.64 | 380.69 | 405.86 | 413.67 |
Chromosome number (2n) | 2 × 12 | 2 × 12 | 2 × 12 | 2 × 12 |
Scaffold number | 88 | 54 | 49 | 44 |
Scaffold N50 (Mb) | 31 | 31.1 | 30.9 | 31.2 |
Contig number | 198 | 113 | 81 | 100 |
Contig N50 (Mb) | 20.05 | 25.53 | 17.66 | 27.17 |
Size of genome anchored to chromosomes (Mb) | 380.60 | 378.68 | 379.27 | 381.68 |
Sequences anchored to chromosomes (%) | 96.3 | 97.8 | 96.8 | 97.4 |
BUSCO completeness of assembly (%) | 99.1 | 99.2 | 99.4 | 99.2 |
Total number of genes | 34,061 | 35,007 | 36,311 | 37,855 |
BUSCO completeness of annotation (%) | 91.6 | 94.0 | 93.8 | 89.2 |
LTR assembly index (LAI) | 15.39 | 15.61 | 14.54 | 15.22 |
