Fig. 4: Examples of the built DNA/RNA models by EM2NA.
From: Automated detection and de novo structure modeling of nucleic acids from cryo-EM maps
In each panel, the PDB structures are colored in green, the EM2NA-built models are colored in blue, and the density maps are colored in transparent gray. The PDB structures are superposed with the density maps. The EM2NA-built models are superposed with the density maps and the PDB structures. The values of C4' RMSD, residue coverage, and sequence match are labeled below each model. a PDB 7OZ3, EMD-13119 at reported resolution 4.46 Å, S. agalactiae BusR in complex with its busA-promotor DNA. b PDB 7XD3, EMD-33134 at reported resolution 4.05 Å, the relaxed pre-Tet-S1 state of wild-type Tetrahymena group I intron. c PDB 7U2B, EMD-26311 at reported resolution 4.10 Å, a case for human mt-SerRS in complex with mt-tRNA(GCU-TL). d PDB 8DR0, EMD-27667 at reported resolution 2.42 Å, the closed state of RFC:PCNA bound to a 3' ss/dsDNA junction. e PDB 8T4S, EMD-41039 at reported resolution 2.60 Å, a complex of MERS-CoV Nsp1 protein bound to the human 40S Ribosomal subunit.
