Fig. 7: Examples of RNA dimer structure prediction. | Nature Communications

Fig. 7: Examples of RNA dimer structure prediction.

From: NuFold: end-to-end approach for RNA tertiary structure prediction with flexible nucleobase center representation

Fig. 7

The native (gray and black) and the predicted structure (rainbow, or green and cyan) are superimposed. a dimerization initiation site of genomic HIV-1 RNA (PDB: 462D). 46 nt, RMSD: 1.71 Å. b a regulatory motif from the thymidylate synthase mRNA. RNA-Puzzles target rp01 (PDB: 3MEI). 46. nt; RMSD: 3.41 Å. c Lariat-capping ribozyme with DP2 stem loop (PDB: 6G7Z). 186 nt; RMSD: 8.05 Å. d Hammerhead Ribozyme with a synthetic inhibitor strand. RNA-puzzle target rp15. 68 nt; RMSD: 14.8 Å.

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