Fig. 2: Simplified model of relevant metabolic capabilities of Hydrogenobacter strain RSW1 based on genome annotation, physiological assays, and literature describing closely related strains.
From: Simultaneous aerobic and anaerobic respiration in hot spring chemolithotrophic bacteria
Amt, ammonia transporter; CI, complex 1; CIII, complex 3; CIV, complex 4 (Cox); CysW, sulfate/thiosulfate ABC transporter; Cyt B, cytochrome B subunit; DIA, diaphorase subunit; Gln, glutamine synthetase; Glt, glutamate synthase; GNG, gluconeogenesis; HydS, hydrogenase small subunit; HydL, hydrogenase large subunit; Nas, assimilatory nitrate reductase; Nir, nitrite reductase; PFOR, pyruvate: ferredoxin oxidoreductase; Q, quinone pool; rTCA, reductive TCA cycle; Sqr, sulfide quinone oxidoreductase; Sox, sulfur oxidation (Sox) pathway; Sre, sulfur reductase. Proteins related to sulfur oxidation (purple), sulfur reduction (orange), nitrogen assimilation (dark blue), carbon fixation (red), hydrogen oxidation (light blue), and oxidative phosphorylation (green) are color coded respectively. Transport proteins are yellow. Pathways are depicted to only show metabolisms discussed in the text. Question marks indicate uncertainty in how those depicted tasks are performed.
