Fig. 2: Expanded and HGT-derived gene families in Bracteacoccaceae.
From: Chromosome-level genomes of two Bracteacoccaceae highlight adaptations to biocrusts
a Comparison of the number of representative expanded and HGT-derived gene families among selected Archaeplastida (The top three expansion genes are shown in the figure, see Supplementary Data 10 for details). Bacteria- and fungi-derived HGTs are marked with different shapes. b Maximum-likelihood tree of Nickel-binding periplasmic protein (NIKA) rooted with bacteria. c Maximum-likelihood tree of Iron transport multicopper oxidase (FETC) rooted with bacteria. Bracteacoccaceae sequences are highlighted with red and blue triangles, respectively. The red asterisk denotes the branch of the putative horizontal gene transfer (HGT). FETC Iron transport multicopper oxidase fetC, NIKA Nickel-binding periplasmic protein, hlyA Hemolysin, HPO Heme peroxidase, MFS major facilitator superfamily, KHA Cation/hydrogen exchanger, Cry8Ea1 insecticidal delta-endotoxin Cry8Ea1 family protein, DFG5 Mannan endo-1,6-alpha-mannosidase DFG5, GH1 beta-galacto-sidase, GH26 glycosyl hydrolase 26, GH28 glycosyl hydrolase 28, MNN9 Mannan polymerase complex subunit mnn9, EAG Endo alpha-1,4 polygalactosaminidase, CEEP Cellobiose 2-epimerase. Gene abbreviations are also explained in Supplementary Data 18.
