Fig. 1: Overview of isolates included in the regression models.

a Percentages of phenotypically resistant (dark shades) and susceptible (light shades) isolates in the base models for the WHO (blue) and ALL (orange) datasets, across 15 drugs. b Lineage distribution for isolates in the base model for the ALL dataset only. Other category = M. bovis and L5-L7. The percentages for the “Other” category are not shown for readability. Only isolates with a single primary lineage according to the Coll 2014 scheme are shown in (b). In both panels, isolate counts for each bar are shown in parentheses. Bar colours: pink = L1, blue = L2, purple = L3, red = L4, white = all other lineages.