Fig. 3: Genetic maps of putative plasmidic prophages. | Nature Communications

Fig. 3: Genetic maps of putative plasmidic prophages.

From: Genetic exchange networks bridge mobile DNA vehicles in the bacterial pathogen Listeria monocytogenes

Fig. 3: Genetic maps of putative plasmidic prophages.The alternative text for this image may have been generated using AI.

A Two plasmids harboring a prophage in genomes H1 (from New York State and derived from long- and short-read sequencing data) and GCF_000438685.2 (from NCBI), with coordinates in kbp. These plasmids also harbor the transposon Tn5422. The presence of a relaxase and T4CP (type IV coupling proteins) genes in these plasmids was determined using oriTDB78. The plasmid of H1 is 100% identical to 62% of GCF_000438685.2’s plasmid sequence, with some genetic rearrangements. A total of 43% of GCF_000438685.2’s plasmid sequence is 99.88% identical to another plasmid of H1, assembled on another contig. B Genetic comparison of both plasmidic prophage sequences, whose genes were functionally annotated by Pharokka84. VirSorter2 (VS2)79 and CheckV’s81 annotations are also presented. VS2’s final scores were of 0.927 and 0.800 for H1 and GCF_000438685.2 prophages, respectively.

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