Fig. 1: Experimental design and iST platforms.
From: Systematic benchmarking of imaging spatial transcriptomics platforms in FFPE tissues
a Overall approach for generating iST data. b Different amplification approaches for Xenium, MERSCOPE, and CosMx. c Overview of the tissue types and numbers of cores used in this study. BlC bladder cancer, BrC breast cancer, CRC colorectal cancer, HNSCC head and neck squamous cell carcinoma, Mel Melanoma, NSCLC non-small cell lung cancer, OvC ovarian cancer, SCC squamous cell carcinoma. d DAPI images from the Xenium run of each TMA, including Tumor TMA 1(tTMA1), Tumor TMA 2(tTMA2), and Normal TMA(nTMA).
