Fig. 3: Comparisons of HyenaDNA, Caduceus-Ph, Caduceus-PS, and Expert Model (Puffin-D) on the transcription initiation signal prediction task of chromosome 8. | Nature Communications

Fig. 3: Comparisons of HyenaDNA, Caduceus-Ph, Caduceus-PS, and Expert Model (Puffin-D) on the transcription initiation signal prediction task of chromosome 8.

From: DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks

Fig. 3

The genomic track on the left displays the ground truth signals (top) alongside predictions from Puffin-D, HyenaDNA, and the two Caduceus models. The X-axis represents genomic coordinates, while the Y-axis indicates signal density. A zoomed-in view of a 1000 bp region centered at the TSS of the gene ZC2HC1A is shown on the right. Source data are provided as a Source Data file.

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