Table 6 Pearson correlation scores for the transcription initiation signal prediction (TISP) task

From: DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks

Models

Transcription Initiation Signal Prediction

 

FC

EC

ER

GC

PC

Avg

Expert Model

0.808

0.710

0.749

0.624

0.774

0.733

CNN

0.029

0.038

0.043

0.037

0.066

0.042

HyenaDNA

0.138

0.124

0.118

0.112

0.168

0.132

Caduceus-Ph

0.114

0.088

0.088

0.097

0.154

0.109

Caduceus-PS

0.113

0.088

0.090

0.102

0.156

0.108

  1. FANTOM CAGE (FC), ENCODE CAGE (EC), ENCODE RAMPAGE (ER), GRO-cap (GC), and PRO-cap (PC) represent the experimental techniques used in the TISP task. “Avg” means the average scores. The highest scores are highlighted in bold.
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