Fig. 2: Phylogenomic total evidence tree and differentially expressed genes in ovules vs.
From: Developmentally regulated genes drive phylogenomic splits in ovule evolution
leaves of 20 species spanning ferns, gymnosperms, and angiosperms. A Parsimony total evidence phylogeny based on transcriptome assemblies of the 20 plant species, with 10,000 jackknife supports. Tree calculated from 22,429 ortholog groups. 1See Supplementary Data 7 for a list of ortholog groups. B Proportion of genes identified as leaf or OvS (ovule or sporangia) differentially expressed (DE) in each species (DESeq2, p-adj < 0.05, FC > 1.5). C Number of OvS DE genes identified in each species.
