Abstract
Alkaline hydrothermal vents are plausible environments for the emergence of life on Earth. By means of a simplified analogical reconstruction of the vent-ocean interface of these systems reproducing early Earth conditions, we show that iron (oxy-hydr)oxide minerals may have carried out proto-bioenergetic processes driven by pH and redox gradients. The initial pH gradient precipitates the iron (oxy-hydr)oxide mineral barriers (magnetite, green rust and amakinite) and yields reducing conditions, enabling the production of metallic iron at room temperature via the disproportionation of Fe2+ to Fe3+ and Fe0. The crystallographic association of Fe0 surrounded by magnetite suggests the coupling of Fe3+ / H2 co-production at ambient temperature by amakinite oxidation with the thermodynamically unfavorable reduction of Fe2+ to Fe0. This abiotic disproportionation process coupling exergonic and endergonic reactions may serve as a proto-bioenergetic mechanism increasing the non-equilibrium reduction state of the system and offers an interesting analog of the biological electronic bifurcation reaction, the free energy coupling being a fundamental thermodynamic trait of life-as-we-know-it.
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Introduction
Since their discovery in the early 2000’s, alkaline hydrothermal vents (AHV) resulting from serpentinization processes have added new perspectives concerning the question of the transitions from geochemical to biochemical entities1,2,3. These systems arise from the circulation of high-temperature/high-pressure water through deep ultramafic rocks, yielding fluids enriched in dissolved H2 and CH44. This results in highly reducing alkaline (pH 9–11), moderate temperature (30–90 °C) effluents which, upon contact with seawater, precipitate chimneys with high content in carbonate minerals5. In addition to the mentioned reductants H2 and CH4, AHV-effluents contain various abiotic organic compounds deriving principally from CO2 reduction at high temperature and high pressure in the subsurface6,7,8,9. Concomitantly, serpentinization processes occurring in the subsurface of the vents are linked to the formation of metal alloys, commonly awaruite (FeNi3), and even pure native iron (Fe0)10, which, in reaction with aqueous CO2, can also induce the formation of formate and acetate11,12,13. Such a strong potential for abiotic organic synthesis crystallized hypotheses on the emergence of life in hydrothermal serpentinization systems14,15,16.
In modern oceans, AHV are predominantly made up of brucite Mg(OH)2 and calcium carbonates CaCO3, mainly aragonite and calcite5,6,7,8,9,10,11,12,13,14,15,16,17. A type of chimney dominated by brucite (up to 99 wt %) harboring a porous structure (~50%) has been discovered at the Shinkai Seep Field17. The brucite crystals are oriented by the flux of the effluent, leading to a stratified structure which results in the formation of micropores and nanopores in the mineral walls18. The micro- and nanoconfined structures of such AHVs provide natural high-surface-area chemical reactors with more efficient reaction rates, selectivity and chemical complexity compared to bulk systems18,19, which, together with the thermophoretic effect20, provides an environment conducive to the concentration of abiotic organic molecules in water.
Due to a greater abundance of Mg-Fe rich ultramafic rocks, e.g., komatiites, in the early Earth than at present, early serpentinization processes (mid/late Hadean to early Archean) were likely to produce a higher amount of H2 than currently, although the qualitative composition of the fluid was expected to be similar to nowadays21. Modern and early alkaline chimneys also feature distinct mineralogical assemblages due to major differences in the vent-ocean interface. The primitive ocean was likely more acidic by 0.5 to 3 pH units compared to the present one due to atmospheric CO2 dominance and, most importantly, devoid of dissolved O2 (e.g.22,23). Fe(II) was also present in high concentrations in ancient anoxic oceans, making an abundant presence of iron (oxy-hydr)oxides (together with carbonates and silicates) in early Earth AHVs plausible15,24,25. Such reactive minerals are of prime interest for prebiotic chemical reactions at the vent-ocean interface. For example, they can mediate the conversion of methane to methanol and yield the formation of various organic compounds26,27.
Iron (oxy-hydr)oxides, in particular layered double hydroxides (LDH) such as green rust, are frequently discussed as ingredients in putative proto-bioenergetic systems. Since they tend to deprotonate in response to oxidation reactions while conserving their crystalline structure, LDHs are capable of conformational changes during oxidation-reduction and protonation-deprotonation oscillations28,29. This conformational flexibility makes them potential non-enzymatic catalysts for proto-anabolic reactions30, especially since these minerals share structural similarities with metal-cluster-containing enzymes involved in current and primordial bioenergetic processes31,32,33,34.
Deciphering the growth and reactivity of iron-rich early Earth mineral structures at the vent-ocean interface is an essential step towards understanding their redox properties, with implications for prebiotic chemistry and electrochemical generation in these environments. We thus produced experimental analogs of iron-rich AHVin the laboratory, focusing on the precipitation of the reactive minerals iron (oxy-hydr)oxide minerals. The analogs were formed at the interface between an alkaline solution and an acidic solution with high concentration of iron in the latter (Fig. 1). These early Earth AHV analogs were let to precipitate under strictly anaerobic conditions for different periods of time (5 h, 24 h, 48 h, 72 h and 10 days) and were then analyzed combining multi-scale approaches. Mineral phases were identified in the bulk using X-ray diffraction (XRD), then analogs with preserved integrity were studied using scanning electron microscopy (SEM) coupled to energy dispersive X-ray spectroscopy (EDXS) to obtain information concerning the structural assembly of minerals. Ultrathin sections were prepared from selected areas for nanoscale analysis using transmission electron microscopy (TEM).
A Schematic representation of an early Earth alkaline hydrothermal vents (AHV) formed at the interface of an alkaline-reduced fluid (in orange) and of the acidic-oxidized seawater (in blue). B Experimental setup to reproduce a simplified analog of an AHV chimney wall formed in a pH gradient, at the interface of a basic solution (in orange, pH 14) and of an iron-rich acidic solution (in blue, pH 2).
Results and discussion
Growth of the alkaline vent analogs over time
Within the first hour, Fe3+-rich phases such as magnetite (FeIIFeIII2O4) are the prime minerals to form (Fig. 2). Fe3+ precipitation is favored in Fe2+/Fe3+ solution at the direct interface between the alkaline fluid and the acidic iron-rich solution. Hydroxylation of Fe2+ occurs around pH 7 to 9, while it ranges from pH 1 to 5 for Fe3+ 35. As ferric aquo complexes are more acidic than ferrous ones36, the formation of Fe3+-rich phases suggests that the crystallization front at the direct interface of the acidic and basic solutions is exposed to acidic rather than basic conditions. Ferric complexes occur very rapidly to first form oligomers, then nuclei and eventually particles35,36,37, likely within the first minutes of the mineral barrier formation or possibly even immediately after adding the two solutions to the respective sides of the dialysis membrane. Magnetite thus results from the adsorption of Fe2+ onto an amorphous or poorly crystalline Fe3+-rich precursor such as nanoparticulate ferrihydrite or an Fe2+/Fe3+ gel35,38,39.
The analyses were performed under anoxic conditions using Co Kα radiation (λ = 1.79026 Å). For each phase, peaks are labeled with carbonated green rust (PDF4 ID: 00-052-0163 / noted GR) chloride green rust (PDF4 ID: 00-040-0127 / noted Cl - GR), magnetite (PDF4 ID: 01-076-1849/ noted M), amakinite (COD ID: 00-900-9104 / noted A), halite (PDF4 ID: 00-005-0628 / noted H) and the most intense peak (1 1 0) of metallic iron α-Fe (PDF4 ID: 01-087-0722 / noted Fe). The shift of the green rust plane (0 0 3) is indicated by a black arrow. See the complete indexing Table S1 in Supplementary Information.
As observed in SEM, the alternation of nanocrystalline magnetite and a more homogeneous material deposited in laminae also indicates the presence of two distinct mineral phases. Together, these mineral phases deposited directly onto the dialysis membrane form a thin laminar mineral structure about ten micrometers thick (Fig. 3A, B). The broad XRD peaks observed at 1 h suggest nanocrystalline or poorly crystallized magnetite, evolving toward better ordered or bigger crystals after 5 h (Fig. 2). After 5 h, the contact area with the dialysis membrane has a similar laminar texture as in the 1 h sample (Fig. 3D, in dark blue), suggesting that no transformation of minerals occurs over this time interval. In the parts furthest from the dialysis membrane, i.e., furthest from the basic solution, other regions feature larger magnetite crystals assembled in a disorderly pattern (Fig. 3E, in blue). Over time, at 5 h (Fig. 3C), the crystallinity and the abundance of magnetite thus increase, but magnetite remains the only mineral phase detected by XRD (Fig. 2).
A AHV analog formed after 1 h. The dark blue area in (B) precipitates on contact with the dialysis membrane and features laminations. C AHV analog formed after 5 h. D The dark blue area near the dialysis membrane also features laminations, while (E) the blue area from (C) shows a heterogeneous and disorganized texture. F AHV analog formed after 24 h. G The cyan area from (F) features laminations characterized by the regular alternation of two different mineral morphologies, as shown in (H–J).
Starting at about 24 h, the layered double hydroxide (LDH) green rust ([FeII(6-x)FeIIIx(OH12]x + [x/nAn− · yH2O] x− with A = Cl− or CO32-) precipitates, containing chloride ions in the interlayers (Fig. 2). Green rust can be formed abiotically by several processes, for example through the partial air oxidation of amakinite (or ferroan brucite) Fe(OH)240, the partial reduction of ferrihydrite41 or by co-precipitation of Fe2+ and Fe3+ in solution under anoxic conditions42. Here, green rust is found to be formed prior to Fe(OH)2, ruling out the Fe(OH)2 oxidation pathway. The co-precipitation pathway represents the most straightforward rationalization of the observations of the present study. Concomitant with the formation of green rust, we observe the formation of a new laminar region alternating between two mineral phases (Fig. 3F, G, in cyan), magnetite with a rounded morphology and green rust platelets (Fig. 3H, J).
The iron oxyhydroxide formation is determined by both the pH and the Eh, as described in the Pourbaix diagram of iron28,36. The alternation of magnetite and green rust thus indicates local variation of pH and/or Eh at the crystallization front. While magnetite and green rust can form in the same pH range, i.e., 8.5 to 1236, their Eh range is more constrained: green rust being formed in more reductive conditions, i.e., at lower redox potential than magnetite, due to a greater amount of Fe2+ in the crystal lattice28,42. Formation of green rust may thus be explained by the local reservoir of iron (enrichment of Fe2+ initially added in solution) at the crystallization front. We propose that massive precipitation of magnetite and possibly ferrihydrite massive precipitation in the first hours of the experiment results in a depletion of Fe3+ at the solidification front, thus driving an enrichment of Fe2+, which allows green rust to form preferentially over magnetite. In turn, this preferential formation of green rust leads to a relative depletion of Fe2+ at the crystallization front, driving an enrichment of Fe3+, explaining the alternation between green and magnetite.
Starting at about 48 h and up to 10 days (Fig. 4), all the assemblages described above (dark blue, blue and cyan, see Fig. 5) feature the same characteristics (Figs. 4A, B, E, G, 5, Supplementary Figs. 1, 2), corroborating the hypothesis that the mineral phases, in particular the alternating layers of magnetite and green rust, are formed directly at the crystallization front and undergo little or no subsequent transformation. After 48 h, hydroxychloride green rust evolves into the more stable hydroxycarbonate green rust, as evidenced by a shift of the (003) XRD diffraction peak from 7.82 Å to 7.59 Å (Fig. 2, Supplementary Table 1). Iron hydroxide amakinite FeII(OH)2 precipitates (Fig. 2), corresponding to the formation of a new region with a homogeneous texture marked by fractures (Figs. 4A, C, E, G, 5A). The precipitation of Fe(OH)2 indicates a strong increase of the pH and a decrease of the Eh at the crystallization front28 (Fig. 5A). Concomitantly, the precipitation of Fe(OH)2 is related to the formation of metallic iron “nails”, observed from 48 h onwards (Figs. 2, 4D, F, H). De facto, the pH and redox conditions allowing the formation of Fe(OH)2 and Fe0 are very close (Fig. 5A). From 48 h to 10 days, the system does not significantly evolve, except from further growth of the metallic iron nails and from increasing abundance of magnetite surrounding Fe0 (Fig. 4D, F, H).
A AHV analog formed after 48 h. The cyan area from (A) in (B) presents laminations formed by the alternation of two minerals, as in the 24 h analog (see Fig. 3). C The yellow area from (A) absent from shorter time samples is characterized by a dense, homogeneous texture which induces fractures in the material. D Formation of metallic iron nails starting 48 h. E AHV analog formed after 72 h, showing the same cyan and yellow areas as in (A). Red arrows indicate metallic iron, as shown at higher magnification in (F). G AHV analog formed after 10 days, harboring the cyan and yellow areas as in (A) and (E), with metallic iron nails indicated by red arrows. H Magnetite nanoparticles surrounding metallic iron.
A Schematic representation of AHV analogs formation in a pH gradient. The dark blue area made of nanocrystalline magnetite is formed after 1 h. The blue area is formed after 5 h, according to magnetite growth. The cyan area formed after 24 h consists of alternating layers of green rust and magnetite, resulting in a laminated structure. Finally, the yellow area is dominated by amakinite and metallic iron nails (in red), surrounded by magnetite. For each area, values of Eh and pH are estimated based on a representative ternary system retrieved from iron Pourbaix diagrams28,43. B pH monitoring of the alkaline solution (in orange) and of the acidic iron-rich solution (in blue) during the formation of the AHV analogs for 72 h. The error bars represent the standard deviation (SD) over two replicates.
In the iron-rich acidic solution remains, pH remains at a value of 2 (Fig. 5B), whereas the ternary system Fe0/Fe(OH)2/GR has an alkaline equilibrium pH value around 828,43 (Fig. 5A). This discontinuity can also be applied to the Eh values. The Fe2+/Fe3+ solution has a midpoint potential around +0.68 V, while the ternary system Fe0/Fe(OH)2/GR has an equilibrium potential around −0.54 V28,43 (Fig. 5A). Overall, the pH gradient induces the speciation of Fe3+ and Fe2+ through their mobilization by mineral phases, from the most oxidized to the most reduced iron mineral phases. In other words, the initial pH gradient mediates a redox gradient and leads to a strong reductive effect on the formation of (oxy-hydr)oxide minerals. The preferential precipitation of Fe(III) (oxy-hydr)oxides due to the pH gradient leads to the formation of Fe(OH)2 at a well-defined stage and therefore at a well-defined spatial location in the AHV analog. Thus, the formation of the mineral phases is in opposition to the imposed pH and redox constraint, which is likely due to the OH− having a diffusion rate higher than the iron complexation. This can be seen through the increase of the pH at the crystallization front, enabling the precipitation of stable mineral phases at very alkaline pH. Otherwise, only ferric iron complexes, stable at lower pH values, would be observed. Additional experiments using a pH difference between the two compartments of 8 and 6 pH units instead of 12 confirm the proton/hydroxide gradient as the primary driving force for the spatial structuring of different minerals, as a more homogeneous structure dominated by amakinite and Fe0 area is formed (Supplementary Fig. 4A–F), while no minerals precipitate in the control experiment with no pH gradient (Supplementary Fig. 4H, I).
Formation of Fe0, a thermodynamic conundrum
While the alternating sequence of iron oxide/hydroxide minerals from magnetite through green rust and on to amakinite is straightforwardly explained by considering local pH-values and precipitation-induced variations of soluble Fe2+/Fe3+ ion concentrations as described above, the formation of Fe0 is thermodynamically puzzling. Only Fe ions in the 2+ and 3+ oxidation states were present in the starting solution, and both halves of the reaction vessel were hermetically sealed. The bulk ambient redox potential therefore is exclusively determined by the initial Fe2+/Fe3+ ratio, and while local potentials can be lower than that of the bulk when predominantly Fe2+ is present (together with appropriate pH-values resulting in the formation of amakinite), there is no simple exergonic reaction scheme that would account for the reduction of Fe2+ (and, even less, Fe3+) to metallic iron. Fe0 is out-of-thermodynamic-equilibrium with the redox potential of the solution, and its generation therefore corresponds to an endergonic reaction.
A possible lead to solve this conundrum may be provided by the observation that the regions made up from metallic iron have formed within the (strongly reduced) amakinite-rich precipitation front but are coated by a layer of (less reduced) iron-oxides (Figs. 4D, F, H, 5, 6A, Supplementary Fig. 3). Ultrathin FIB sections prepared from a metallic iron nail show that these iron oxides are closely associated to the entire surface of the nails (Fig. 6B, E, Supplementary Fig. 3). Estimation of oxygen percentage performed via EDXS confirms that the surrounding minerals are rich in oxygen (>30%) (Fig. 6C, D), identified as magnetite given the 4.8 A° interplanar distance of the (1 1 1) lattice plane (Fig. 6E, F). Such a pattern is characteristic of an iron disproportionation reaction44,45, that is, the production of compounds, part of which is in a more oxidized state and another part in a more reduced one as compared with the starting material46. Here, Fe2+ would thus be disproportionated into Fe3+ (more oxidized state) and Fe0 (more reduced state). Such a type of reaction is reminiscent of the dismutation of wüstite (FeO) minerals (Eq. 1)46, which is thermodynamically possible.
A Localization of the ultrathin section performed on a metallic iron nail (72 h sample). B TEM observation of the FIB section. C Mapping of the oxygen percentage conducted on the FIB section. Metallic iron, in red (<5% O), is surrounded by iron oxides, in blue (>40% O). D Corresponding energy dispersive X-ray spectra of the metallic iron (in blue) and of the iron oxides (in red). E TEM observation of the metallic iron (in red) and iron oxide (in blue) interface, as attested by the measured interatomic distance (in blue) and the electron diffraction pattern (in red).
This mechanism has been experimentally observed at high temperatures and high pressures, i.e., under the conditions of the mantle45,47, as well as at lower temperatures, yet still in the range of 300 °C48. In these cases, disproportionation can be explained by the stability domain of wüstite, which decreases concomitantly with temperature and pressure, while the stability field of metallic iron and magnetite increases at lower temperature and pressure46,48. In our case, all three mineral phases involved, namely amakinite Fe(OH)2, magnetite Fe3O4 and metallic iron Fe0, are stable at low temperatures and in the same range of redox conditions49,50. Still, Fe2+ from amakinite has to be oxidized into Fe3+, and Fe0 has to be obtained from Fe2+ (or Fe3+, which is thermodynamically less favorable). Moreover, these two redox reactions are likely causally related, since the formation of metallic iron is seen to be structurally related to the formation of magnetite.
In the temporal evolution of the analog described here, increasingly reduced mineral phases bear witness of a progressive and local reduction of the fluid at the crystallization front (Fig. 5), likely explained by an enrichment of Fe2+ in the local reservoir of iron. In such acidic environments, free protons are abundant and able to accept electrons from Fe2+, thus representing the most likely oxidant for Fe(OH)2 minerals, deprotonating as a function of the oxidation (Eq. 2)28 and forming Fe3+ and H2 (Eq. 3, Supplementary Fig. 3). Oxidation and deprotonation of amakinite is better known as the Schikorr reaction, where ferrous hydroxide Fe(OH)2 is dismutated into magnetite and H2, even at low temperature (below 100 °C) (Eq. 4)51,52.
An endergonic reaction performed by a proto-bioenergetic system
By thermodynamically modeling the Schikorr reaction with production of H2, knowing Eq. 4, it appears that this reaction has a ΔG of +10 kJ/mol, resulting in an equilibrium H2 pressure of 0.13 bar. However, in the experiments of Carlin et al.53 at 100 °C, the H2 pressures controlled by kinetics were measured at a pressure of 0.003 bar. By taking this value of 0.003, which is likely an overestimation in our conditions, we obtained a ΔG of −5 kJ/mol, meaning the ΔG of the Schikorr reaction remains largely negative in experiments at ambient temperature (see more details of the kinetic constraints in Supplementary, Box 1). Thus, the Schikorr reaction in our early Earth AHV analog is a highly exergonic reaction.
On the other hand, the amakinite dismutation (or Fe2+ disproportionation) into magnetite and metallic iron described in Eq. 4 leads to a highly positive ΔG of +35 kJ/mol. Another possibility would be to consider H2 as a sufficiently powerful reductant to reduce Fe(OH)2 to Fe0, oxidizing the H2 to H2O (Eq. 5). However, for the reaction (Eq. 5) to occur, the H-H bond dissociation requires the astonishing ΔG of +435 kJ/mol at ambient temperature54, making the direct amakinite dismutation (Eq. 4) more likely. In any case, the observation of metallic iron undoubtedly means that the system of AHV analogs presented here performs an endergonic reaction.
We speculate that during the Schikorr reaction (Eq. 3), a portion of the electrons and protons, respectively produced by the oxidation of Fe2+ to Fe3+ and the associated dehydroxylation of OH groups associated with Fe2+ (Eq. 2), are decoupled in a mineral system dominated by the layered double hydroxide amakinite (or ferroan brucite). This allows the migration of proton and hydroxide ions following a pH gradient. As a result, the Fe2+/Fe3+ redox couple remaining almost on site in Fe(OH)2 has a very reducing electrochemical potential, providing electrons to reduce Fe(II) to Fe(0). By allowing some electrons to carry out a positive ΔG reaction (the endergonic reduction of Fe2+ into Fe0) relying on a negative ΔG redox reaction (the exergonic oxidation of Fe2+ into Fe3+ coupled to H2 production), this early Earth AHV analog therefore generates local ambient potentials that are thermodynamically out-of-equilibrium (within regions containing Fe0) while taking the entire system closer to equilibrium, the latter process making this dismutation process thermodynamics-compliant.
It is precisely this type of process which is the hallmark of all living entities. Life converts environmental free energy into intracellular disequilibria (i.e., low entropy), which subsequently drives the quasi-totality of all metabolic pathways55,56,57. The mechanism performing this conversion of free energy in living organisms is called bioenergetics. The two fundamental intracellular disequilibria built up by bioenergetic processes are far-from-equilibrium ratios of phosphates to polyphosphates and reducing potentials exceeding those of the environment58. The latter disequilibrium is achieved by several bioenergetic mechanisms, one of which is called electron bifurcation59, a process which disproportionates a 2-electron redox compound into a more reducing redox center on one side and a less reducing one on the other side. Fe0 has been previously mentioned as an indispensable precursor for the electronic bifurcation process60, where metallic iron takes over catalytic properties to facilitate further protometabolic reactions as an abiotic analog of reduced ferredoxin61,62. Accordingly, the disproportionation mechanism itself of amakinite into magnetite and metallic iron represents a tantalizing analog in a purely abiotic system of the electron bifurcation reaction, fundamental to bioenergetics and hence to life’s thermodynamic prerequisites.
In summary, we have shown that the formation of iron minerals at the interface between an alkaline solution and an acidic solution with high iron concentrations results in a spatially highly structured barrier of iron (oxy-hydr)oxides. The initial pH conditions imposed by the two solutions induce a speciation of Fe3+ and Fe2+ mobilized by the mineral phases and lead to a strong reductive effect. The formation of the mineral phases is in complete opposition to the imposed pH and redox constraints: the precipitation of minerals favored in acidic conditions, such as Fe(III) complexes, occurred at the direct interface with the basic solution (directly onto the dialysis membrane), while the precipitation of minerals requiring more basic conditions, such as amakinite, occurred at the direct interface with the acidic solution. We interpret this phenomenon as the result of the OH- diffusion rate on iron complexes.
Ultimately, this strong pH constraint on AHV analogs leads to the formation of metallic iron Fe0 due to the disproportionation of Fe2+ (from amakinite minerals) into Fe3+ (magnetite) and Fe0 (metallic iron). The dismutation of amakinite at ambient temperature suggests the coupling of the exergonic Schikorr reaction with the endergonic reduction of Fe2+ into Fe0, a process reminiscent of the bioenergetic mechanism of electron bifurcation. The system we describe here thus generates a local decrease in entropy in the form of thermodynamic out-of-equilibrium ambient redox potentials mediated by the disproportionation of Fe2+ ions. Such local lowering of entropy driven by bulk free energy is the thermodynamic prerequisite for allowing the emergence of life in the framework of thermodynamics.
Methods
Precipitation protocol for the iron-rich early Earth alkaline vents analog
The experimental setup for the AHV analog precipitation is based on Barge et al.63. The experiments were conducted in strict anoxia under N2 atmosphere in a JacomexTM glove box (<10 ppm O2). We used a piece of dialysis membrane (Spectra-Por® Membrane MWCO: 3500) placed at the interface of two glass vials (DEK ResearchTM) hermetically sealed at the center. Two solutions were prepared: a basic solution (pH 14) composed of 0.27 M NaOH and 0.033 M Na2CO3 35 mL of degassed water; and an acidic solution (pH 2) composed of 0.06 M FeCl3•6H2O and 0.12 M FeCl2•4H2O into 35 mL of degassed water. Both solutions were added simultaneously on either side of the dialysis membrane and let to incubate at room temperature for different durations (1 h, 5 h, 24 h, 48 h, 72 h, 96 h and 10 d). Control experiments have been performed using different pH differential, adjusting the iron solution with 1 M NaOH and the base side with 0.01 M HCl: 1) a pH differential of 8 units (approximately pH = 4 on the iron side, pH = 12 on the base side), of 6 units (approximately pH = 6 on the iron side, pH = 12 on the base side), and almost no pH gradient (pH ≈ 7 on both sides) (see Supplementary Informations, Fig. S5). The mineral barriers formed on the iron-rich acid solution side, directly onto the dialysis membrane (Fig. 1), were then dried in the glovebox and prepared for the various analyses in duplicates.
X-ray diffraction (XRD)
Sample preparations and measurements were conducted under N2 atmosphere in strictly anoxic conditions (<10 ppm O2). AHV analogs were crushed in an agate mortar and resuspended in degassed pure ethanol before being deposited on a zero-background Si wafer. The wafer was inserted in a custom-built anoxic sample chamber equipped with a KaptonR window. The sealed chamber was then removed from the glove-box, and XRD patterns were collected on a XPert Pro Panalytical™ diffractometer at the IMPMC diffractometry platform. Data were collected using Co Kα radiation in continuous scan mode with an equivalent 0.033° 2θ step, counting 1 h (2 scans of 30 min) per sample over the 5–80° 2θ range. Minerals were identified using XPert HighScore Plus software, PDF4 and COD databases: iron hydroxychloride green rust (PDF4 ID: 00-040-0127), iron hydroxycarbonate green rust (PDF4 ID: 00-052-0163), magnetite (PDF4 ID: 01-076-1849), amakinite (COD ID: 00-900-9104), halite (PDF4 ID: 00-005-0628) and metallic iron α-Fe (PDF4 ID: 01-087-0722).
Scanning electron microscopy coupled with energy dispersive X-ray spectroscopy (SEM-EDXS)
The whole mineral membranes were inserted into Epoxy Araldite 2020 resin directly in the glovebox to limit oxygen exposure. Once within the resin, the samples were taken out of the glovebox and placed in the oven at 35 °C to accelerate the polymerization of the resin. The samples were then cut in half using a wire saw and polished, half on the top and half on the edge, with 6, 3 and 1 µm diamond suspensions and an alcohol-based lubricant to limit oxygen exposure during the preparation. The samples were carbon-coated immediately after polishing and investigated using a Scanning Electron Microscope (SEM) coupled with Energy-Dispersive X-ray Spectroscopy (EDXS). SEM-EDXS data were collected at the CINaM microscopy platform, using a JEOL JSM-7900F equipped with a QUANTAX XFlash® Flat QUAD annular four-channel silicon drift (Bruker) for EDXS analysis. Images were collected using an acceleration voltage of 15 kV at a working distance of 11 mm, while EDXS analysis were conducted using a tension of 6 kV.
Ultrathin sections by focused ion beam (FIB)
Ultrathin FIB sections (20 μm * 5 μm * 100 nm) were extracted at Eurofins Biophy Research from one analog of alkaline vents formed after 72 h, using Ga milling with a SEM-FIB TESCAN CLARA. Two FIB sections were extracted from a selected region at the interface between the metallic iron and surrounding minerals, i.e., magnetite. A layer of Pt was deposited on the sample surface to protect it from Ga sputtering. Milling was performed gradually at low Ga currents (500 pA, 250 pA and 50 pA) with a final milling step at 20 pA to minimize common artefacts, including local Ga implantation, mixing of components, or redeposition of the sputtered material onto the sample surface64,65.
Transmission electron microscopy (TEM)
Nanoscale characterization of the minerals surrounding the metallic iron was performed on FIB sections at the CINaM microscopy platform. TEM data were collected using a JEOL JEM-2010 (LaB6) operating at 200 kV and equipped with a QUANTAX XFlash® four-channel silicon drift SDD detector and a GATAN Ultrascan 1000XP camera. Mineral identification was achieved using selected-area electron diffraction (SAED) and energy-dispersive X-ray spectroscopy (EDXS).
Thermodynamic modeling
Thermodynamic modeling was performed using CHESS code 4.0.366. with Thermodem database66,67. A precipitation medium was modeled at 25 °C containing 1 litre of solution: 0.27 M NaOH, 0.06 M (aq)Fe3+, 0.12 M (aq)Fe2+. The partial pressure of H2 was fixed at 0.003 bar based on Carlin et al.53 experiments68.
Data availability
The X-ray diffraction data generated in this study are provided in the Supplementary Information and as Source Data file. Additional microscopy data are available from the authors upon request.
References
Russell, M. J. The importance of being alkaline. Science 302, 580–581 (2003).
Kelley, D. S. et al. A serpentinite-hosted ecosystem: the lost city hydrothermal field. Science 307, 1428–1434 (2005).
Russell, M. J., Hall, A. J. & Martin, W. Serpentinization as a source of energy at the origin of life. Geobiology 8, 355–371 (2010).
McCollom, T. M. & Seewald, J. S. A reassessment of the potential for reduction of dissolved CO 2 to hydrocarbons during serpentinization of olivine. Geochim. Cosmochim. Acta. 65, 3769–3778 (2001).
Ludwig, K. A., Kelley, D. S., Butterfield, D. A., Nelson, B. K. & Früh-Green, G. Formation and evolution of carbonate chimneys at the Lost City Hydrothermal Field. Geochim. Cosmochim. Acta. 70, 3625–3645 (2006).
Horita, J. & Berndt, M. E. Abiogenic methane formation and isotopic fractionation under hydrothermal conditions. Science 285, 1055–1057 (1999).
McCollom, T. & Seewald, J. Carbon isotope composition of organic compounds produced by abiotic synthesis under hydrothermal conditions. Earth Planet. Sci. Lett. 243, 74–84 (2006).
Seewald, J. S., Zolotov, M., Yu & McCollom, T. Experimental investigation of single carbon compounds under hydrothermal conditions. Geochim. Cosmochim. Acta. 70, 446–460 (2006).
Proskurowski, G. et al. Abiogenic hydrocarbon production at lost city hydrothermal field. Science 319, 604–607 (2008).
Frost, B. R. & Beard, J. S. On silica activity and serpentinization. J. Petrol. 48, 1351–1368 (2007).
He, C., Tian, G., Liu, Z. & Feng, S. A mild hydrothermal route to fix carbon dioxide to simple carboxylic acids. Org. Lett. 12, 649–651 (2010).
Hudson, R. et al. CO 2 reduction driven by a pH gradient. Proc. Natl Acad. Sci. 117, 22873–22879 (2020).
De Graaf, R., De Decker, Y., Sojo, V. & Hudson, R. Quantifying catalysis at the origin of life. Chemistry 29, e202301447 (2023).
Russell, M. J. & Hall, A. J. The emergence of life from iron monosulphide bubbles at a submarine hydrothermal redox and pH front. J. Geol. Soc. 154, 377–402 (1997).
Russell, M. J. First Life: Billions of years ago, deep under the ocean, the pores and pockets in minerals that surrounded warm, alkaline springs catalyzed the beginning of life. Am. Scientist 94, 32–39 (2006).
Camprubi, E., Jordan, S. F., Vasiliadou, R. & Lane, N. Iron catalysis at the origin of life. IUBMB Life 69, 373–381 (2017).
Okumura, T. et al. Brucite chimney formation and carbonate alteration at the Shinkai Seep Field, a serpentinite-hosted vent system in the southern Mariana forearc. Geochem. Geophys. Geosyst. 17, 3775–3796 (2016).
Lee, H.-E. et al. Osmotic energy conversion in serpentinite-hosted deep-sea hydrothermal vents. Nat. Commun. 15, 8193 (2024).
Muñoz-Santiburcio, D. & Marx, D. Chemistry in nanoconfined water. Chem. Sci. 8, 3444–3452 (2017).
Kreysing, M., Keil, L., Lanzmich, S. & Braun, D. Heat flux across an open pore enables the continuous replication and selection of oligonucleotides towards increasing length. Nat. Chem. 7, 203–208 (2015).
Leong, J. A. M., Ely, T. & Shock, E. L. Decreasing extents of Archean serpentinization contributed to the rise of an oxidized atmosphere. Nat. Commun. 12, 7341 (2021).
Halevy, I. & Bachan, A. The geologic history of seawater pH. Science 355, 1069–1071 (2017).
Johansen, A., Camprubi, E., Van Kooten, E. & Hoeijmakers, H. J. Self-oxidation of the atmospheres of rocky planets with implications for the origin of life. Astrobiology 24, 856–880 (2024).
Kotopoulou, E., Lopez-Haro, M., Gamez, J. J. C. & García-Ruiz, J. M. Nanoscale anatomy of iron-silica self-organized membranes: implications for prebiotic chemistry. Angew. Chem. Int. Ed. 60, 1396–1402 (2020).
Johnson, J. E., Present, T. M. & Valentine, J. S. Iron: Life’s primeval transition metal. Proceedings Of The National Academy Of Sciences 121, (2024).
Barge, L. M., Flores, E., Baum, M. M., VanderVelde, D. G. & Russell, M. J. Redox and pH gradients drive amino acid synthesis in iron oxyhydroxide mineral systems. Proc. Natl Acad. Sci. 116, 4828–4833 (2019).
Farr, O. et al. Methanol on the rocks: green rust transformation promotes the oxidation of methane. Journal Of The Royal Society Interface 20, (2023).
Génin, J.-M. R., Ruby, C., Géhin, A. & Refait, P. Synthesis of green rusts by oxidation of Fe(OH)2, their products of oxidation and reduction of ferric oxyhydroxides; Eh–pH Pourbaix diagrams. Comptes Rendus Géosci. 338, 433–446 (2006).
Génin, J.-M. R., Renard, A. & Ruby, C. H. Fougerite FeII − III oxyhydroxycarbonate in environmental chemistry and nitrate reduction. Hyperfine Interact. 186, 31–37 (2008).
Russell, M. J. et al. Green rust: the simple organizing ‘Seed’ of all life? Life 8, 35 (2018).
Nitschke, W., McGlynn, S. E., Milner-White, E. J. & Russell, M. J. On the antiquity of metalloenzymes and their substrates in bioenergetics. Biochim. Biophys. Acta. (BBA) - Bioenerg. 1827, 871–881 (2013a).
Nitschke, W. & Russell, M. J. Beating the acetyl coenzyme A pathway to the origin of life. Philos. Trans. R. Soc. B Biol. Sci. 368, 20120258 (2013b).
Weiss, M. C. et al. The physiology and habitat of the last universal common ancestor. Nat. Microbiol. 1, 16116 (2016).
Duval, S. et al. Fougerite: the not-so-simple progenitor of the first cells. Interface Focus 9, 20190063 (2019).
Jolivet, J.-P., Tronc, E. & Chanéac, C. Iron oxides: from molecular clusters to solid. A nice example of chemical versatility. Comptes Rendus Géosci. 338, 488–497 (2006).
Jolivet, J., Chanéac, C. & Tronc, E. Iron oxide chemistry. From molecular clusters to extended solid networks. Chem. Commun. 5, 477–483 (2004).
Zhu, M. et al. Precipitation pathways for ferrihydrite formation in acidic solutions. Geochim. Cosmochim. Acta. 172, 247–264 (2015).
Sugimoto, T. & Matijević, E. Formation of uniform spherical magnetite particles by crystallization from ferrous hydroxide gels. J. Colloid Interface Sci. 74, 227–243 (1980).
Combes, J. M., Manceau, A., Calas, G. & Bottero, J. Y. Formation of ferric oxides from aqueous solutions: A polyhedral approach by X-ray absorption spectroscdpy: I. Hydrolysis and formation of ferric gels. Geochim. Cosmochim. Acta. 53, 583–594 (1989).
Refait, P. H. et al. Chemical composition and Gibbs standard free energy of formation of Fe(II)-Fe(III) hydroxysulphate green rust and Fe(II) hydroxide. Clay Miner. 34, 499–510 (1999).
Hansen, H. C. B. Composition, stabilization, and light absorption of Fe(II)Fe(III) hydroxy-carbonate (‘green rust’). Clay Miner. 24, 663–669 (1989).
Ruby, C. et al. Green rusts synthesis by coprecipitation of FeII–FeIII ions and mass-balance diagram. Comptes Rendus Géosci. 338, 420–432 (2006).
Refait, P., Géhin, A., Abdelmoula, M. & Génin, J.-M. R. Coprecipitation thermodynamics of iron(II–III) hydroxysulphate green rust from Fe(II) and Fe(III) salts. Corros. Sci. 45, 659–676 (2002).
O’Neill, H. et al. Ferric iron in the upper mantle and in transition zone assemblages: implications for relative oxygen fugacities in the mantle. In Geophysical Monograph. 73–88 (2011).
Frost, D. J. et al. Experimental evidence for the existence of iron-rich metal in the Earth’s lower mantle. Nature 428, 409–412 (2004).
Yakovlev, O. I., Dikov, Y.uP. & Gerasimov, M. V. Effect of the disproportionation reaction of ferrous iron in impact-evaporation processes. Geochem. Int. 47, 134–142 (2009).
Pan, F. et al. Iron disproportionation in peridotite fragments from the mantle transition zone. Nat. Commun. 16, 5440 (2025).
Pouyan, S., Bassett, W. A. & Lin-Gun, L. Experimental determination of the effects of pressure and temperature on the stoichiometry and phase relations of wüstite. Geochim. Cosmochim. Acta. 47, 773–778 (1983).
Moody, J. B. Serpentinization: a review. Lithos 9, 125–138 (1976).
Revie, R. W. & Uhlig, H. H. Definition and Importance of Corrosion. Corrosion and Corrosion Control, Ch1 (5th ed.; John Wiley & Sons: New York). (2008).
Schikorr, G. Über die Reaktionen zwischen Eisen, Seinen Hydroxyden und Wasser. Z. Für Elektrochemie Und Angew. Physikalische Chem. 35, 65–70 (1929).
Neubeck, A. et al. Olivine alteration and H2 production in carbonate-rich, low-temperature aqueous environments. Planet. Space Sci. 96, 51–61 (2014).
Carlin, W. et al. Kinetics of low-temperature H2 production in ultramafic rocks by ferroan brucite oxidation. Geochem. Perspect. Lett. 29, 27–32 (2024).
Herzberg, G. & Shoosmith, J. Spectrum and structure of the free methylene radical. Nature 183, 1801–1802 (1959).
Branscomb, E. & Russell, M. J. Turnstiles and bifurcators: The disequilibrium converting engines that put metabolism on the road. Biochim. Biophys. Acta. (BBA) - Bioenerg. 1827, 62–78 (2012).
Branscomb, E. Boltzmann’s casino and the unbridgeable chasm in the emergence of life research. arXiv (Cornell University) (2023).
Nitschke, W. et al. The winding road from origin to emergence (of Life). Life 14, 607 (2024).
Nitschke, W. et al. Aqueous electrochemistry: the toolbox for life’s emergence from redox disequilibria. Electrochemical Science Advances 3, (2022).
Buckel, W. & Thauer, R. K. Flavin-based electron bifurcation, a new mechanism of biological energy coupling. Chem. Rev. 118, 3862–3886 (2018).
Brabender, M. et al. Ferredoxin reduction by hydrogen with iron functions as an evolutionary precursor of flavin-based electron bifurcation. Proc. Natl. Acad. Sci. USA 121, e2318969121 (2024).
Sousa, F. L., Preiner, M. & Martin, W. F. Native metals, electron bifurcation, and CO2 reduction in early biochemical evolution. Curr. Opin. Microbiol. 43, 77–83 (2018).
Varma, S. J., Muchowska, K. B., Chatelain, P. & Moran, J. Native iron reduces CO2 to intermediates and end-products of the acetyl-CoA pathway. Nat. Ecol. Evol. 2, 1019–1024 (2018).
Barge, L. M. et al. Pyrophosphate synthesis in iron mineral films and membranes simulating prebiotic submarine hydrothermal precipitates. Geochim. Cosmochim. Acta. 128, 1–12 (2013).
Bernard, S. et al. Ultrastructural and chemical study of modern and fossil sporoderms by Scanning Transmission X-ray Microscopy (STXM). Rev. Palaeobot. Palynol. 156, 248–261 (2008).
Schiffbauer, J. D. & Xiao, S. Novel application of focused ion beam electron microscopy (FIB-EM) in preparation and analysis of microfossil ultrastructures: a new view of complexity in early Eukaryotic organisms. Palaios 24, 616–626 (2009).
Van der Lee J. and Windt L. D. CHESS Tutorial and Cookbook, Version 3.0. Technical Report 1±2 (Ecole des Mines de Paris, Centre d’Informatique Géologique, Fontainebleau, France), (2002).
Blanc, P. H. et al. Thermoddem: a geochemical database focused on low-temperature water/rock interactions and waste materials. Appl. Geochem. 27, 2107–2116 (2012).
Marty, N. C. M. et al. A database of dissolution and precipitation rates for clay-rocks minerals. Appl. Geochem. 55, 108–118 (2014).
Acknowledgments
We warmly thank Isabelle Pinet (BIP) for her administrative support, Damien Chaudanson and Alexandre Altié (CINaM) for their valuable help with SEM-EDXS, TEM and samples preparation for the microscopy, Amandine David (Eurofins Scientific) for the production of the FIB sections, Ludovic Delbes (IMPMC) and Vasile Heresanu (CINaM) for their help with XRD. This work was supported by the French Agence Nationale pour la Recherche (grant no. ANR-22-CE30-0035-01 attributed to SD and WN), and by French Agence Nationale pour la Recherche under the France 2030 investment plan (grant no. ANR-22-EXOR-0001 attributed to SD and FG).
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S.D., W.N. and C.T. designed the study. C.T., N.G., S.D. and A.C. produced the experimental analogs. C.T., F.G., N.G., O.F. and O.G. performed the SEM observations. C.T. and G.O.N. conducted the XRD experiments and analyses of the data. C.T. and D.F. performed the TEM observations. C.T. and F.G. conducted the thermodynamic modeling. C.T. and C.R. retrieved the ternary systems from iron Pourbaix diagrams. C.T. wrote the first version of the paper. All authors contributed to the revision of the article, read and approved the submitted version.
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Truong, C., Gaudu, N., Farr, O. et al. Fe2+ disproportionation within iron-rich alkaline vent analogues reveals proto-bioenergetic systems. Nat Commun 16, 10682 (2025). https://doi.org/10.1038/s41467-025-65716-w
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DOI: https://doi.org/10.1038/s41467-025-65716-w








