Table 2 Software and Algorithms used in the experiments

From: Residual tumor cells after insufficient radiofrequency ablation promote lung metastasis by educating CD177hiPAD4hi neutrophils

Software/Tool

Version/Info

HISAT2

v2.0.5

HTSeq

v0.6.0

DEseq2

v1.34.0

pheatmap

v1.0.12

ggplot2

v3.4.4

clusterProfiler

v4.10

seq-ImmuCC

https://github.com/wuaipinglab/ImmuCC

Illumina bcl2fastq

v2.19.1

R

V4.3.2

Seurat

v5.0.1

monocle

v0.2.3.0

biomaRt

v2.58.1

GSEA

v4.0.2

ggpubr

v0.6.0

survival

V3.5

  1. This table provides a comprehensive list of the bioinformatics software and R packages utilized in the data analysis pipelines, including their versions and sources where applicable.
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