Fig. 4: UMAP projection of primary single-cell data by different methods. | Nature Communications

Fig. 4: UMAP projection of primary single-cell data by different methods.

From: scDrugMap: benchmarking large foundation models for drug response prediction

Fig. 4: UMAP projection of primary single-cell data by different methods.

UMAP embeddings using layer freezing training method are shown for a scFoundation b scGPT and c UCE, with cells colored cancer type and cell response. Source data are provided as a Source Data file. MM Multiple myeloma, ALL Acute lymphoblastic leukemia, CLL Chronic lymphocytic leukemia, AML Acute myeloid leukemia.

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