Abstract
Obesity impairs metabolic flexibility—the capacity to adapt to fluctuating energy demands. Emerging evidence suggests that dietary interventions, particularly time-restricted feeding (TRF), may help restore this flexibility. In this study, we demonstrate that feeding upregulates PRMT3 and asymmetric dimethylarginine (ADMA)-containing proteins via insulin–pAKT signaling, while fasting reduces their expression. Pharmacological inhibition of PRMT3 attenuates diet-induced obesity (DIO) and enhances adipocyte glycolysis in male mice. Mechanistically, PRMT3 drives the expression of citrate transporter SLC25A1 during feeding through direct arginine methylation. A 16:8 TRF regimen normalizes PRMT3 and ADMA levels while suppressing SLC25A1 expression. Notably, PRMT3 inhibition recapitulates the metabolic benefits of 16:8 TRF and improves metabolic flexibility. Furthermore, adipocyte-specific deletion of Slc25a1 in male mice protects against DIO and enhances insulin sensitivity. Collectively, these findings identify PRMT3-mediated arginine methylation in vWAT as a nutrient-responsive regulatory axis that impairs metabolic flexibility in obesity, which is a potential therapeutic target.
Data availability
All data are available in the main text or the supplementary materials. Source data are provided with this paper. RNA-seq and Metabolomics data has been updated as Supplementary Data. Source data are provided in this paper.
Code availability
No new code has been generated in this study.
References
Mihaylova, M. M. et al. When a calorie is not just a calorie: Diet quality and timing as mediators of metabolism and healthy aging. Cell Metab. 35, 1114–1131 (2023).
Longo, V. D. & Mattson, M. P. Fasting: molecular mechanisms and clinical applications. Cell Metab. 19, 181–192 (2014).
Green, C. L., Lamming, D. W. & Fontana, L. Molecular mechanisms of dietary restriction promoting health and longevity. Nat. Rev. Mol. Cell Biol. 23, 56–73 (2022).
Smith, R. L., Soeters, M. R., Wüst, R. C. & Houtkooper, R. H. Metabolic flexibility as an adaptation to energy resources and requirements in health and disease. Endocr. Rev. 39, 489–517 (2018).
Chaix, A., Lin, T., Le, H. D., Chang, M. W. & Panda, S. Time-restricted feeding prevents obesity and metabolic syndrome in mice lacking a circadian clock. Cell Metab. 29, 303–319. e304 (2019).
Hatori, M. et al. Time-restricted feeding without reducing caloric intake prevents metabolic diseases in mice fed a high-fat diet. Cell Metab. 15, 848–860 (2012).
Hepler, C. et al. Time-restricted feeding mitigates obesity through adipocyte thermogenesis. Sci. Signal. 378, 276–284 (2022).
Bao, R. et al. Effects of time-restricted feeding on energy balance: a cross-over trial in healthy subjects. Front. Endocrinol. 13, 870054 (2022).
Liu, D. et al. Calorie restriction with or without time-restricted eating in weight loss. N. Engl. J. Med. 386, 1495–1504 (2022).
Quist, J. S. et al. Effects of 3 months of 10-h per-day time-restricted eating and 3 months of follow-up on bodyweight and cardiometabolic health in Danish individuals at high risk of type 2 diabetes: the RESET single-centre, parallel, superiority, open-label, randomised controlled trial. Lancet Healthy Longev. 5,e314–e325 (2024).
Teong, X. T. et al. Intermittent fasting plus early time-restricted eating versus calorie restriction and standard care in adults at risk of type 2 diabetes: a randomized controlled trial. Nat. Med. 29, 963–972 (2023).
Weir, H. J. et al. Dietary restriction and AMPK increase lifespan via mitochondrial network and peroxisome remodeling. Cell Metab. 26, 884–896 (2017).
Hasek, B. E. et al. Dietary methionine restriction enhances metabolic flexibility and increases uncoupled respiration in both fed and fasted states. Am. J. Physiol. Regul. Integr. Comp. Physiol. 299, R728–R739 (2010).
Malloy, V. L. et al. Methionine restriction decreases visceral fat mass and preserves insulin action in aging male Fischer 344 rats independent of energy restriction. Aging Cell 5, 305–314 (2006).
Malloy, V. L. et al. Methionine restriction prevents the progression of hepatic steatosis in leptin-deficient obese mice. Metabolism 62, 1651–1661 (2013).
Plaisance, E. P. et al. Dietary methionine restriction increases fat oxidation in obese adults with metabolic syndrome. J. Clin. Endocrinol. Metab. 96, E836–E840 (2011).
Capelo-Diz, A. et al. Hepatic levels of S-adenosylmethionine regulate the adaptive response to fasting. Cell Metab 35, 1373–1389 (2023).
Sáenz de Urturi, D. et al. Methionine adenosyltransferase 1a antisense oligonucleotides activate the liver-brown adipose tissue axis preventing obesity and associated hepatosteatosis. Nat. Commun. 13, 1096 (2022).
Blanc, R. S. & Richard, S. J. M. C. Arginine methylation: the coming of age. Mol. Cell 65, 8–24 (2017).
Tang, J. et al. PRMT1 is the predominant type I protein arginine methyltransferase in mammalian cells. J. Biol. Chem. 275, 7723–7730 (2000).
Choi, S. et al. Depletion of Prmt1 in adipocytes impairs glucose homeostasis in diet-induced obesity. Diabetes 70, 1664–1678 (2021).
Hirai, H. et al. MK-2206, an allosteric Akt inhibitor, enhances antitumor efficacy by standard chemotherapeutic agents or molecular targeted drugs in vitro and in vivo. Mol. Cancer Ther. 9, 1956–1967 (2010).
Kaniskan, H. Ü et al. A potent, selective and cell-active allosteric inhibitor of protein arginine methyltransferase 3 (PRMT3). Angew. Chem.127, 5255–5259 (2015).
Liu, W. et al. IL-1R-IRAKM-Slc25a1 signaling axis reprograms lipogenesis in adipocytes to promote diet-induced obesity in mice. Nat. Commun. 13, 2748 (2022).
Mosaoa, R., Kasprzyk-Pawelec, A., Fernandez, H. R. & Avantaggiati, M. L. The mitochondrial citrate carrier SLC25A1/CIC and the fundamental role of citrate in cancer, inflammation and beyond. Biomolecules 11, 141 (2021).
Wei, H.-H. et al. A systematic survey of PRMT interactomes reveals the key roles of arginine methylation in the global control of RNA splicing and translation. Sci. Bull. 66, 1342–1357 (2021).
Cienfuegos, S. et al. Effects of 4-and 6-h time-restricted feeding on weight and cardiometabolic health: a randomized controlled trial in adults with obesity. Cell Metab. 32, 366–378. e363 (2020).
Tan, M. et al. Inhibition of the mitochondrial citrate carrier, Slc25a1, reverts steatosis, glucose intolerance, and inflammation in preclinical models of NAFLD/NASH. Cell Death Differ. 27, 2143–2157 (2020).
Infantino, V., Iacobazzi, V., Menga, A., Avantaggiati, M. L. & Palmieri, F. J. A key role of the mitochondrial citrate carrier (SLC25A1) in TNFα-and IFNγ-triggered inflammation. Biochim. et Biophys. Acta Gene Regul. Mech. 1839, 1217–1225 (2014).
Goodpaster, B. H. & Sparks, L. M. Metabolic flexibility in health and disease. Cell Metab. 25, 1027–1036 (2017).
Galgani, J. E., Moro, C. & Ravussin, E. Metabolic flexibility and insulin resistance. Am. Physiol. Endocrinol. Metab. 295, https://doi.org/10.1152/ajpendo.90558.2008 (2008).
Reshef, L. et al. Glyceroneogenesis and the triglyceride/fatty acid cycle. J. Biol. Chem. 278, 30413–30416 (2003).
Deota, S. et al. Diurnal transcriptome landscape of a multi-tissue response to time-restricted feeding in mammals. Cell Metab. 35, 150–165. e154 (2023).
Xin, H. et al. A multi-tissue multi-omics analysis reveals distinct kineztics in entrainment of diurnal transcriptomes by inverted feeding. Iscience 24, 102335 (2021).
Huang, R. et al. Multi-omics profiling reveals rhythmic liver function shaped by meal timing. Nat. Commun. 14, 6086 (2023).
Mauvoisin, D. et al. Circadian and feeding rhythms orchestrate the diurnal liver acetylome. Cell Rep. 20, 1729–1743 (2017).
Xin, H. et al. Daytime-restricted feeding enhances running endurance without prior exercise in mice. Nat. Metab. 5, 1236–1251 (2023).
Leone, A., Moncada, S., Vallance, P., Calver, A. & Collier, J. Accumulation of an endogenous inhibitor of nitric oxide synthesis in chronic renal failure. Lancet 339, 572–575 (1992).
Antoniades, C. et al. Association of plasma asymmetrical dimethylarginine (ADMA) with elevated vascular superoxide production and endothelial nitric oxide synthase uncoupling: implications for endothelial function in human atherosclerosis. Eur. Heart J. 30, 1142–1150 (2009).
Teerlink, T., Luo, Z., Palm, F. & Wilcox, C. S. Cellular ADMA: regulation and action. Pharmacol. Res. 60, 448–460 (2009).
Jacobi, J. et al. Dimethylarginine dimethylaminohydrolase overexpression ameliorates atherosclerosis in apolipoprotein E-deficient mice by lowering asymmetric dimethylarginine. Am. J. Pathol. 176, 2559–2570 (2010).
Xiao, H.-B. et al. Effect of asymmetric dimethylarginine on atherogenesis and erythrocyte deformability in apolipoprotein E deficient mice. Life Sci. 81, 1–7 (2007).
Shendre, A. et al. Admixture mapping of subclinical atherosclerosis and subsequent clinical events among African Americans in 2 large cohort studies. Circ. Cardiovasc. Genet. 10, e001569 (2017).
Kim, D. -i et al. PRMT3 regulates hepatic lipogenesis through direct interaction with LXRα. Diabetes 64, 60–71 (2015).
Nahon, J. E., Groeneveldt, C., Geerling, J. J., van Eck, M. & Hoekstra, M. Inhibition of protein arginine methyltransferase 3 activity selectively impairs liver X receptor-driven transcription of hepatic lipogenic genes in vivo. British J. Pharmacol. 175, 3175–3183 (2018).
de Jong, L. M. et al. PRMT3 inhibitor SGC707 reduces triglyceride levels and induces pruritus in Western-type diet-fed LDL receptor knockout mice. Sci. Rep. 12, 483 (2022).
Acknowledgements
We thank all members of the Jia and Zhang laboratories for helpful discussions. We thank CAM-SU for excellent guidance and assistance with experiments performed in this study. Research support was provided by STI2030-Major Projects (2021ZD0203400 to Y.Z.), National Natural Science Foundation of China (32100944 to Z.J. and 32271206 to Y.Z.), Natural Science Foundation of Jiangsu Province (BK20210715 to Z.J.), Gusu Innovation and Entrepreneur Leading Talents project (ZXL2023200 to Z.J.), Natural Science Foundation of Jiangsu Province (No. BK20255001), Ministry of Science and Technology (2018YFA0801102 to Y.D.). YZ’s lab was supported by the Suzhou International Joint Laboratory for Diagnosis and Treatment of Brain Diseases.
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Z.J. and Y.Z. conceived the study, Z.J. and A.V. wrote the manuscript. Z.J., Y.Z., A.V., and Z.H. designed experiments. Z.H., X.L., X.C., You, Q.C., H.Z., M.D., and S.L. performed experiments. Z.J., Z.H., and K.C. visualized and curated the data. Y.L., K.C., Y.F., L.S., L.W., T.S., S.K., and Y.D. contributed reagents/materials/analysis tools. Z.J., Y.Z., and A.V. edited the manuscript.
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Huang, Z., Liu, X., Chen, X. et al. PRMT3-mediated post-translational adaptation to fasting regulates metabolic flexibility. Nat Commun (2026). https://doi.org/10.1038/s41467-026-68883-6
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DOI: https://doi.org/10.1038/s41467-026-68883-6