Abstract
Small interfering RNAs (siRNAs) offer significant therapeutic potential; however, extrahepatic applications, particularly to the skin, remain a challenge. Limited work has explored siRNA therapies for the skin, the largest organ in the human body, where dermatological conditions affect over one-third of the population worldwide. The skin’s external location makes it easily accessible for direct, local administration. Here, we present the in vivo intradermal delivery of therapeutic siRNAs into a porcine model whose skin structure most closely resembles that of human skin, demonstrating functional, and sustained gene silencing. We characterize two siRNA conjugates in human ex vivo and porcine in vivo skin models, showing that increased hydrophobicity significantly enhances skin retention and efficacy of siRNAs. Using a validated JAK1-targeting compound, we demonstrate that local delivery of siRNA enables accumulation across multiple cell types and suppression of JAK1-dependent inflammatory pathway in human skin ex vivo. In porcine models, intradermal injections result in prolonged skin siRNA retention for more than eight weeks, limited systemic tissue exposure, and sustained gene silencing for at least one month. These results underscore the importance of tailored siRNA conjugate design for achieving optimal skin biodistribution and therapeutic efficacy, providing a foundation for siRNA-based treatments for a broad range of dermatological conditions.
Data availability
All data generated in this study are provided in the Supplementary Information and Source Data file. A Source Data file is provided with this paper. Source data are provided with this paper.
References
Belgrad, J., Fakih, H. H. & Khvorova, A. Nucleic acid therapeutics: successes, milestones, and upcoming innovation. Nucleic Acid Ther. 34, 52–72 (2024).
Setten, R. L., Rossi, J. J. & Han, S.-P. The current state and future directions of RNAi-based therapeutics. Nat. Rev. Drug Discov. 18, 421–446 (2019).
Tang, Q. & Khvorova, A. RNAi-based drug design: considerations and future directions. Nat. Rev. Drug Discov. 23, 341–364 (2024).
Friedrich, M. & Aigner, A. Therapeutic siRNA: state-of-the-art and future perspectives. BioDrugs 36, 549–571 (2022).
Biscans, A. et al. Docosanoic acid conjugation to siRNA enables functional and safe delivery to skeletal and cardiac muscles. Mol. Ther. 29, 1382–1394 (2021).
Hariharan, V. N. et al. Divalent siRNAs are bioavailable in the lung and efficiently block SARS-CoV-2 infection. Proc. Natl. Acad. Sci. USA 120, e2219523120 (2023).
Brown, K. M. et al. Expanding RNAi therapeutics to extrahepatic tissues with lipophilic conjugates. Nat. Biotechnol. 40, 1500–1508 (2022).
Paunovska, K., Loughrey, D. & Dahlman, J. E. Drug delivery systems for RNA therapeutics. Nat. Rev. Genet. 23, 265–280 (2022).
Ain, Q. U., Campos, E. V. R., Huynh, A., Witzigmann, D. & Hedtrich, S. Gene delivery to the skin – how far have we come? Trends Biotechnol. 39, 474–487 (2021).
Bilousova, G. Gene therapy for skin fragility diseases: the new generation. J. Invest. Dermatol. 139, 1634–1637 (2019).
Hay, R. J. et al. The global burden of skin disease in 2010: an analysis of the prevalence and impact of skin conditions. J. Invest Dermatol 134, 1527–1534 (2014).
Moloo, A. Recognizing neglected skin diseases: WHO publishes pictorial training guide, https://www.who.int/news/item/08-06-2018-recognizing-neglected-skin-diseases-who-publishes-pictorial-training-guide (2018).
Sufianov, A. et al. Advances in transdermal siRNAs delivery: a review of current research progress. Non-coding RNA Res. 8, 392–400 (2023).
Schwartz, D. M. et al. JAK inhibition as a therapeutic strategy for immune and inflammatory diseases. Nat. Rev. Drug Discov. 16, 843–862 (2017).
Pasparakis, M., Haase, I. & Nestle, F. O. Mechanisms regulating skin immunity and inflammation. Nat. Rev. Immunol. 14, 289–301 (2014).
Kabashima, K., Honda, T., Ginhoux, F. & Egawa, G. The immunological anatomy of the skin. Nat. Rev. Immunol. 19, 19–30 (2019).
Godin, B. & Touitou, E. Transdermal skin delivery: predictions for humans from in vivo, ex vivo and animal models. Adv. drug Deliv. Rev. 59, 1152–1161 (2007).
Biscans, A. et al. Diverse lipid conjugates for functional extra-hepatic siRNA delivery in vivo. Nucleic Acids Res. 47, 1082–1096 (2018).
Fakih, H. H. et al. Dendritic amphiphilic siRNA: Selective albumin binding, in vivo efficacy, and low toxicity. Molecular Therapy - Nucleic Acids 34. https://doi.org/10.1016/j.omtn.2023.102080 (2023).
Tang, Q. et al. RNAi-based modulation of IFN-γ signaling in skin. Mol. Ther. 30, 2709–2721 (2022).
Tang, Q. et al. Rational design of a JAK1-selective siRNA inhibitor for the modulation of autoimmunity in the skin. Nat. Commun. 14, 7099 (2023).
Tang, Q. et al. Multispecies-targeting siRNAs for the modulation of JAK1 in the skin. Mol. Ther. Nucleic Acids 35, 102117 (2024).
Zomer, H. D. & Trentin, A. G. Skin wound healing in humans and mice: Challenges in translational research. J. Dermatol. Sci. 90, 3–12 (2018).
Balato, A. et al. Human microbiome: composition and role in inflammatory skin diseases. Arch. Immunol. Ther. Exp. 67, 1–18 (2019).
Pazdur, R. Incyte comes of age with JAK inhibitor approval. Nat. Biotechnol. 30, 3 (2012).
Fania, L. et al. Multiple roles for cytokines in atopic dermatitis: from pathogenic mediators to endotype-specific biomarkers to therapeutic targets. Int. J. Mol. Sci. 23, 2684 (2022).
Triyangkulsri, K. & Suchonwanit, P. Role ofJanus kinase inhibitors in the treatment of alopecia areata. Drug Design 12, 2323–2335 (2018).
Bergqvist, C. & Ezzedine, K. Vitiligo: a focus on pathogenesis and its therapeutic implications. J. Dermatol. 48, 252–270 (2021).
Tokareva, K. et al. JAK inhibitors and black box warnings: what is the future for JAK inhibitors? Expert Rev. Clin. Immunol. 19, 1385–1397 (2023).
Summerfield, A., Meurens, F. & Ricklin, M. E. The immunology of the porcine skin and its value as a model for human skin. Mol. Immunol. 66, 14–21 (2015).
Godinho, B. et al. Pharmacokinetic profiling of conjugated therapeutic oligonucleotides: a high-throughput method based upon serial blood microsampling coupled to peptide nucleic acid hybridization assay. Nucleic Acid Ther. 27, 323–334 (2017).
Cross, S. E., Magnusson, B. M., Winckle, G., Anissimov, Y. & Roberts, M. S. Determination of the effect of lipophilicity on the in vitro permeability and tissue reservoir characteristics of topically applied solutes in human skin layers. J. Invest Dermatol 120, 759–764 (2003).
Alterman, J. F. et al. A divalent siRNA chemical scaffold for potent and sustained modulation of gene expression throughout the central nervous system. Nat. Biotechnol. 37, 884–894 (2019).
Zakrewsky, M., Kumar, S. & Mitragotri, S. Nucleic acid delivery into skin for the treatment of skin disease: proofs-of-concept, potential impact, and remaining challenges. J. Control. Release 219, 445–456 (2015).
Rodgers, A. M. et al. Design and characterisation of a dissolving microneedle patch for intradermal vaccination with heat-inactivated bacteria: a proof of concept study. Int J. Pharm. 549, 87–95 (2018).
Deng, Y. et al. Transdermal delivery of siRNA through microneedle array. Sci. Rep. 6, 21422 (2016).
Dharamdasani, V. et al. Topical delivery of siRNA into skin using ionic liquids. J. Control. Release 323, 475–482 (2020).
Tadros, A. R. et al. STAR particles for enhanced topical drug and vaccine delivery. Nat. Med. 26, 341–347 (2020).
National Library of Medicine (US). A Phase 1B/2A, Randomized, Double-blind, Placebo-controlled, Intraindividual Study to Evaluate the Safety, Tolerability, Pharmacokinetics and Preliminary Efficacy of ALD-102 Solution in Subjects With Alopecia Areata. https://clinicaltrials.gov/study/NCT06826196 (2025).
Osborn, M. F. et al. Hydrophobicity drives the systemic distribution of lipid-conjugated siRNAs via lipid transport pathways. Nucleic Acids Res. 47, 1070–1081 (2018).
Lacroix, A., Fakih, H. H. & Sleiman, H. F. Detailed cellular assessment of albumin-bound oligonucleotides: increased stability and lower non-specific cell uptake. J. Control. Release 324, 34–46 (2020).
Lacroix, A., Edwardson, T. G. W., Hancock, M. A., Dore, M. D. & Sleiman, H. F. Development of DNA nanostructures for high-affinity binding to human serum albumin. J. Am. Chem. Soc. 139, 7355–7362 (2017).
Biscans, A. et al. The chemical structure and phosphorothioate content of hydrophobically modified siRNAs impact extrahepatic distribution and efficacy. Nucleic Acids Res. 48, 7665–7680 (2020).
Acknowledgments
This project was supported by the National Institutes of Health (grant R35 GM131839, S10 OD020012, and S10 OD036329 to A.K.; and Alys Pharmaceuticals/ Aldena Therapeutics (support to J.F.A).
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H.H.F., M.Z.U., Q.T., J.F.A., J.E.H., A.K., C.B., C.B.P., and T.P. conceived the project. H.H.F., M.Z.U., Q.T., J.F.A., A.K., S.F., S.J., C.B., C.B.P., and J.O.G. contributed to the experimental design. S.J. was the sole point of contact responsible for overseeing the conduct of studies at Altasciences. H.H.F., M.Z.U., and Q.T. contributed experimentally to human ex vivo studies, including flow cytometry and gene silencing. H.H.F., Q.T., M.Z.U., M.O.R., and K.Y.G. contributed experimentally to ex vivo human skin stimulation and downstream signaling. M.Z.U., V.R., K.Y.G., and R.G. contributed experimentally to siRNA accumulation in porcine organs. M.O.R. and T.J.R.O. contributed experimentally to porcine silencing, stimulation and downstream signaling. M.Z.U., Q.T., H.H.F., M.O.R., T.J.R.O., C.D., R.C.F., C.L., and A.S. helped with overall skin processing and experimental setup. H.H.F. synthesized all siRNA compounds used in the manuscript, with H.H.F. and H.F.S. contributing to the design of the dendritic siRNA conjugation. H.H.F., Q.T., M.Z.U., C.B., J.F.A., and A.K. wrote the manuscript. All authors provided feedback and approved the manuscript.
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The authors declare the following competing financial interest(s): The University of Massachusetts Chan Medical School holds patent or filed patent applications for the modulation of JAK1 with RNAi-based technologies (patent application number 18393044; Oligonucleotides for IFN-γ signaling pathway modulation; status pending), docosanoic acid conjugate (patent application number 17377632; Conjugated oligonucleotides for tissue-specific delivery) and dendritic conjugate for skin delivery (Patent application number 18592943; status pending). A.K. serves on the scientific advisory board of Alys Pharmaceuticals. J.E.H. owns equities in Rheos Medicines; is a founder of Alys Pharmaceuticals and Villaris Therapeutics. Select authors of this publication are listed as inventors on RNAi technology patents (HHF, M.Z.U., Q.T., J.F.A., J.E.H., A.K., M.Z.U., R.F., and K.G.) that have been licensed to biotech and pharmaceutical companies. The following patents are licensed by Aldena Therapeutics Ltd.: patent application number 18393044 (Oligonucleotides for IFN-γ signaling pathway modulation) and patent application number 17377632 (Conjugated oligonucleotides for tissue-specific delivery). C.B.P., C.B., J.O.G., and T.P. are executive employees of Alys Pharmaceuticals. SF is employed by Certara. SJ is employed by Altasciences. The remaining authors declare no competing interests.
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Fakih, H.H., Zain UI Abideen, M., Rachid, M.O. et al. Intradermal delivery of lipophilic siRNAs enables prolonged skin retention and sustained gene silencing in a porcine model. Nat Commun (2026). https://doi.org/10.1038/s41467-026-68993-1
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DOI: https://doi.org/10.1038/s41467-026-68993-1