Fig. 3: K-mer containment of phased nuclear haplotypes in global Puccinia graminis f. sp. tritici isolates with available short-read sequencing data. | Nature Communications

Fig. 3: K-mer containment of phased nuclear haplotypes in global Puccinia graminis f. sp. tritici isolates with available short-read sequencing data.

From: Allelic variation of Avr genes in highly virulent strains explains severe wheat stem rust epidemics

Fig. 3: K-mer containment of phased nuclear haplotypes in global Puccinia graminis f. sp. tritici isolates with available short-read sequencing data.The alternative text for this image may have been generated using AI.

The containment of hap01 and hap02 (Pgt21-0), hap03 (Ug99), and hap04 and hap05 (ETH2013-1) in whole genome short-read sequences from 108 Pgt isolates. The k-mer identity (%) score was plotted against the shared k-mer (%) score for containment of the phased haplotypes for each isolate. Coloured data points represent isolates containing the respective haplotype (k-mer identity ≥ 99.89% and shared k-mers ≥ 97.67%), and data points labelled in grey represent isolates that do not contain that haplotype. Raw k-mer containment values are provided in Supplementary Data 11.

Back to article page