Abstract
Chikungunya exposure in-utero is linked to neonatal morbidity and neurodevelopmental effects. We examined the long-term morbidity associated with in-utero Chikungunya. This registry-based cohort study linked records of infants born in Brazil between 2015 and 2018, with all-cause first hospitalization and death as outcome. Infants were followed until the outcome, their third birthday, or the end of the study. Adjusted stratified Cox models were used to estimate hazard ratios (HR), 95% confidence intervals (95% CIs), and absolute risk differences. A total of 1,821 exposed and 18,210 unexposed infants were included. The HR for hospitalization was 1.21 (95% CI: 1.11–1.36), corresponding to 37 excess hospitalizations per 1000 exposed (95% CI: 16-64). The risk was twofold for intrapartum exposure (HR 2.08, 95% CI: 1.33–3.44) and elevated for first- and second-trimester exposure. Evidence for risk of death was limited. Here we show an elevated hospitalization risk associated with in-utero Chikungunya exposure.
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Data availability
The relevant data are included in the manuscript and appendix. Deidentified individual participant data are available on reasonable request to CIDACS, subject to institutional collaboration agreements and Brazilian ethics committee approval.
Code availability
No custom code was developed; analysis was conducted using publicly available R packages. Code is available upon request.
References
Mora, C. et al. Over half of known human pathogenic diseases can be aggravated by climate change. Nat. Clim. Chang 12, 869–875 (2022).
Chikungunya virus disease case notification rate per 100 000 population, January 2024-December 2024. European Centre for Disease Prevention and Control. https://www.ecdc.europa.eu/en/publications-data/chikungunya-virus-disease-case-notification-rate-100-000-population-january-2024 (2025).
UK Health Security Agency. Rise in chikungunya cases in UK travellers returning from abroad. Gov.uk https://www.gov.uk/government/news/rise-in-chikungunya-cases-in-uk-travellers-returning-from-abroad (2025).
Cerqueira-Silva, T. et al. Risk of death following chikungunya virus disease in the 100 Million Brazilian Cohort, 2015-18: a matched cohort study and self-controlled case series. Lancet Infect. Dis. 24, 504–513 (2024).
Gérardin, P. et al. Multidisciplinary prospective study of mother-to-child chikungunya virus infections on the island of La Réunion. PLoS Med. 5, e60 (2008).
Contopoulos-Ioannidis, D., Newman-Lindsay, S., Chow, C. & LaBeaud, A. D. Mother-to-child transmission of Chikungunya virus: a systematic review and meta-analysis. PLoS Negl. Trop. Dis. 12, e0006510 (2018).
Ferreira, F. C. P. et al. Vertical transmission of chikungunya virus: a systematic review. PLoS ONE 16, e0249166 (2021).
Fritel, X. et al. Chikungunya virus infection during pregnancy, réunion, France, 2006. Emerg. Infect. Dis. 16, 418–425 (2010).
Foeller, M. E. et al. Chikungunya infection in pregnancy - reassuring maternal and perinatal outcomes: a retrospective observational study. BJOG 128, 1077–1086 (2021).
Laoprasopwattana, K., Suntharasaj, T., Petmanee, P., Suddeaugrai, O. & Geater, A. Chikungunya and dengue virus infections during pregnancy: seroprevalence, seroincidence and maternal-fetal transmission, southern Thailand, 2009-2010. Epidemiol. Infect. 144, 381–388 (2016).
Basurko, C. et al. Symptomatic Chikungunya virus infection and pregnancy outcomes: a nested case-control study in French Guiana. Viruses 14, 2705 (2022).
Sagay, A. S. et al. Chikungunya virus antepartum transmission and abnormal infant outcomes in Nigeria. medRxiv https://pubmed.ncbi.nlm.nih.gov/37609297/ (2023).
Cerqueira-Silva, T. et al. Symptomatic chikungunya, dengue and Zika infection during pregnancy and perinatal outcomes in Brazil from 2015 to 2020: a registry-based study. Nat Commun. 16, 7207 (2025).
Waechter, R. et al. Pre and postnatal exposure to Chikungunya virus does not affect child neurodevelopmental outcomes at two years of age. PLoS Negl. Trop. Dis. 14, e0008546 (2020).
Quintans, M. D. S. et al. Neurodevelopmental outcomes in children vertically exposed to Chikungunya virus: a two-year follow-up study. Pediatr. Infect. Dis. J. 44, 154–160 (2025).
Sarton, R. et al. Perinatal mother-to-child Chikungunya virus infection: Screening of cognitive and learning difficulties in a follow-up study of the Chimere cohort on Reunion Island. Viruses 17, 704 (2025).
Faustino, R. et al. Pro-inflammatory profile of children exposed to maternal Chikungunya virus infection during the intrauterine period: a one-year follow-up study. Viruses 14, 1881 (2022).
Hofsink, N., Groenink, L. & Plösch, T. The fetal programming effect of maternal immune activation (MIA) on the offspring’s immune system. Semin Immunopathol. 46, 14 (2024).
Salomão, N. et al. Spontaneous abortion and Chikungunya infection: pathological findings. Viruses 13, 554 (2021).
Bianco, M. E. & Josefson, J. L. Hyperglycemia during pregnancy and long-term offspring outcomes. Curr. Diab Rep. 19, 143 (2019).
Cardoso, D. S. et al. O uso indiscriminado de medicamentos isentos de prescrição no Brasil. Res Soc. Dev. 11, e26811931503 (2022).
Antonucci, R. et al. Use of non-steroidal anti-inflammatory drugs in pregnancy: impact on the fetus and newborn. Curr. Drug Metab. 13, 474–490 (2012).
Gardini Sanches Palasio, R., Marques Moralejo Bermudi, P., Luiz de Lima Macedo, F., Reis Santana, L. M. & Chiaravalloti-Neto, F. Zika, chikungunya and co-occurrence in Brazil: space-time clusters and associated environmental-socioeconomic factors. Sci. Rep. 13, 18026 (2023).
Ogwuche, J. et al. Arbovirus surveillance in pregnant women in north-central Nigeria, 2019–2022. medRxiv https://pubmed.ncbi.nlm.nih.gov/37609234/ (2023).
Rafael, R. A. A., Ribeiro, V. S., Cavalcante, M. C. V., Santos, A. M. dos & Simões, V. M. F. Relacionamento probabilístico: recuperação de informações de óbitos infantis e natimortos em localidade no Maranhão, Brasil. Cad. Saude Publica 27, 1371–1379 (2011).
Coelho, G. E. et al. Protocolo de investigação de óbitos por arbovírus urbanos no Brasil – dengue, chikungunya e zika. Brasília: Ministério da Saúde (2016). https://www.saude.ba.gov.br/wp-content/uploads/2022/11/Protocolo-Tecnico-INVESTIGACAO-OBITO-ARBOVIRUS.pdf.
CECAD 2.0. https://cecad.cidadania.gov.br/painel03.php (2026).
Bonilha, Ede A. et al. Cobertura, completude e confiabilidade das informações do Sistema de Informações sobre Nascidos Vivos de maternidades da rede pública no município de São Paulo, 2011. Epidemiol. Serv. Saude 27, e201712811 (2018).
Paixao, E. S. et al. Cohort Profile: Centro de Integração de Dados e Conhecimentos para Saúde (CIDACS) Birth Cohort. Int J. Epidemiol. 50, 37–38 (2021).
SINAN. https://portalsinan.saude.gov.br/ (2025).
IBGE. IBGE. https://ces.ibge.gov.br/base-de-dados/metadados/ministerio-da-saude/sistema-de-informacoes-hospitalares-do-sus-sih-sus.html (2025).
Paixao, E. S. et al. A nationwide longitudinal investigation on the role of prenatal exposure to infectious diseases on the onset of chronic conditions in children and adolescents in Brazil. Wellcome Open Res 9, 320 (2024).
Notificações. Ministério da Saúde. https://www.gov.br/saude/pt-br/assuntos/saude-de-a-a-z/c/chikungunya/notificacoes/notificacoes (2025).
Nitatpattana, N. et al. Long-term persistence of Chikungunya virus neutralizing antibodies in human populations of North Eastern Thailand. Virol. J. 11, 183 (2014).
Cunningham, F. G. et al Williams Obstetrics (24th ed.). (McGraw-Hill Education; 2014).
Cunha, R. V. da & Trinta, K. S. Chikungunya virus: clinical aspects and treatment - A Review. Mem. Inst. Oswaldo Cruz 112, 523–531 (2017).
World Health Organization. International statistical classification of diseases and related health problems, 10th revision. https://iris.who.int/bitstream/handle/10665/246208/9789241549165-V1-eng.pdf (2016).
Barbosa de Andrade, R. et al. Adequacy of prenatal care in northeast Brazil: Pilot data comparing attainment of standard care criteria for first-time adolescent and adult pregnant women. Int J. Women’s. Health 12, 1023–1031 (2020).
Compreendendo o território através de suas articulações. Agência de Notícias - IBGE. https://agenciadenoticias.ibge.gov.br/agencia-noticias/2012-agencia-de-noticias/noticias/10542-compreendendo-o-territorio-atraves-de-suas-articulacoes (2017).
Ribas Freitas, A. R., Pinheiro Chagas, A. A., Siqueira, A. M. & Pamplona de Góes Cavalcanti, L. How much of the current serious arbovirus epidemic in Brazil is dengue and how much is chikungunya? Lancet Reg. Health Am. 34, 100753 (2024).
Acknowledgments
EP receives funding from Wellcome Trust 225925/Z/22/Z. TC-S receives funding from the Royal Society (NIF¥R1¥231435).
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M.K. and E.P. conceived and designed the study and developed the protocol. M.K., O.C., and T.C.-S. performed the data analysis. M.K. drafted the manuscript. M.K., O.C., T.C.-S., V.B., M.G.T., M.B., and E.P. contributed to the interpretation of data and critically reviewed and approved the final version of the manuscript. E.P. supervised the study. M.K., O.C., T.C.-S., and E.P. had full access to all the data and took responsibility for the integrity of the data and the accuracy of the data analysis.
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Kushibuchi, M., Carroll, O., Cerqueira-Silva, T. et al. In-utero exposure to chikungunya and child morbimortality: a population-based study using linked routine data. Nat Commun (2026). https://doi.org/10.1038/s41467-026-70786-5
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DOI: https://doi.org/10.1038/s41467-026-70786-5


