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Sulfatase modifying factors control the timing of zebrafish convergence and extension morphogenesis
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  • Published: 31 March 2026

Sulfatase modifying factors control the timing of zebrafish convergence and extension morphogenesis

  • Ailen Soledad Cervino1,2,
  • Amrita Basu3,
  • Ryan J. Weiss  ORCID: orcid.org/0000-0002-4563-60753,4,
  • Gursimran Kaur Bajwa5,6,
  • Rubén Marín-Juez5,6,
  • Sandra L. Grimm  ORCID: orcid.org/0000-0002-0682-31341,2,
  • Cristian Coarfa1,2 &
  • …
  • Margot Kossmann Williams  ORCID: orcid.org/0000-0001-9704-63011,2 

Nature Communications , Article number:  (2026) Cite this article

We are providing an unedited version of this manuscript to give early access to its findings. Before final publication, the manuscript will undergo further editing. Please note there may be errors present which affect the content, and all legal disclaimers apply.

Subjects

  • Gastrulation
  • Glycobiology
  • Post-translational modifications

Abstract

Convergence and extension (C&E) cell movements that elongate the primary embryonic axis are precisely timed during vertebrate gastrulation, but mechanisms controlling their onset remain unknown. Using zebrafish embryonic explants that recapitulate C&E and its timing, we identified sulfatase modifying factor 2 (sumf2) as a candidate trigger gene for C&E onset. sumf2 and its paralog sumf1 encode negative and positive sulfatase regulators, respectively, whose expression levels invert and increase heparan sulfate sulfation during gastrulation. Overexpressing sumf1 or sumf2 causes delayed or precocious C&E, respectively, whereas their loss shifts C&E timing in the opposite direction. We identified Sulf1, a modifier of heparan sulfate proteoglycans (HSPGs), as their key downstream effector and found that altering heparan sulfate sulfation levels shifts C&E onset and suppresses sumf1 and sumf2 mutant phenotypes. This work supports a model in which sumf2 expression reduces sulfatase activity, rewriting HSPG sulfation patterns to promote the onset of C&E morphogenesis.

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Data availability

Raw RNA-sequencing data were previously published71 and are available in NCBI Gene Expression Omnibus under accession number GSE246158. Raw data for LC-MS analysis of glycosaminoglycans generated in this study are available at GlycoPOST144 under project ID GPST000676. All image and gene expression analysis data generated for this study are available in the Supplementary and Source Data files. Source data are provided with this paper.

References

  1. Smith, K. K. Time’s arrow: heterochrony and the evolution of development. Int J. Dev. Biol. 47, 613–621 (2003).

    Google Scholar 

  2. Smith, K. K. Sequence heterochrony and the evolution of development. J. Morphol. 252, 82–97 (2002).

    Google Scholar 

  3. Petridou, N. I., Grigolon, S., Salbreux, G., Hannezo, E. & Heisenberg, C. P. Fluidization-mediated tissue spreading by mitotic cell rounding and non-canonical Wnt signalling. Nat. Cell Biol. 21, 169–178 (2019).

    Google Scholar 

  4. Petridou, N. I., Corominas-Murtra, B., Heisenberg, C. P. & Hannezo, E. Rigidity percolation uncovers a structural basis for embryonic tissue phase transitions. Cell 184, 1914–1928.e1919 (2021).

    Google Scholar 

  5. Hagos, E. G. & Dougan, S. T. Time-dependent patterning of the mesoderm and endoderm by Nodal signals in zebrafish. BMC Dev. Biol. 7, 22 (2007).

    Google Scholar 

  6. Pinheiro, D., Kardos, R. & Hannezo, ÉH. Carl-Philipp, Morphogen gradient orchestrates pattern-preserving tissue morphogenesisvia motility-driven unjamming. Nat. Phys. 18, 1482–1493 (2022).

    Google Scholar 

  7. Liu, Z., Woo, S. & Weiner, O. D. Nodal signaling has dual roles in fate specification and directed migration during germ layer segregation in zebrafish. Development 145, dev163535 (2018).

  8. Moriyama, Y., Mitsui, T. & Heisenberg, C. P. Hoxb genes determine the timing of cell ingression by regulating cell surface fluctuations during zebrafish gastrulation. Development 152, dev204261 (2025).

  9. Iimura, T. & Pourquié, O. Collinear activation of Hoxb genes during gastrulation is linked to mesoderm cell ingression. Nature 442, 568–571 (2006).

    Google Scholar 

  10. Wallingford, J. B. & Harland, R. M. Xenopus Dishevelled signaling regulates both neural and mesodermal convergent extension: parallel forces elongating the body axis. Development 128, 2581–2592 (2001).

    Google Scholar 

  11. Wallingford, J. B. & Harland, R. M. Neural tube closure requires Dishevelled-dependent convergent extension of the midline. Development 129, 5815–5825 (2002).

    Google Scholar 

  12. Davidson, L. A. & Keller, R. E. Neural tube closure in Xenopus laevis involves medial migration, directed protrusive activity, cell intercalation and convergent extension. Development 126, 4547–4556 (1999).

    Google Scholar 

  13. Keller, R., Davidson, L. A. & Shook, D. R. How we are shaped: the biomechanics of gastrulation. Differentiation 71, 171–205 (2003).

    Google Scholar 

  14. Keller, R. et al. Mechanisms of convergence and extension by cell intercalation. Philos. Trans. R. Soc. Lond. B Biol. Sci. 355, 897–922 (2000).

    Google Scholar 

  15. Huebner, R. J. & Wallingford, J. B. Coming to consensus: a unifying model emerges for convergent extension. Dev. Cell 46, 389–396 (2018).

    Google Scholar 

  16. Shih, J. & Keller, R. Cell motility driving mediolateral intercalation in explants of Xenopus laevis. Development 116, 901–914 (1992).

    Google Scholar 

  17. Shih, J. & Keller, R. Patterns of cell motility in the organizer and dorsal mesoderm of Xenopus laevis. Development 116, 915–930 (1992).

    Google Scholar 

  18. Concha, M. L. & Adams, R. J. Oriented cell divisions and cellular morphogenesis in the zebrafish gastrula and neurula: a time-lapse analysis. Development 125, 983–994 (1998).

    Google Scholar 

  19. Sepich, D. S., Calmelet, C., Kiskowski, M. & Solnica-Krezel, L. Initiation of convergence and extension movements of lateral mesoderm during zebrafish gastrulation. Dev. Dyn. 234, 279–292 (2005).

    Google Scholar 

  20. Schmid, B. et al. High-speed panoramic light-sheet microscopy reveals global endodermal cell dynamics. Nat. Commun. 4, 2207 (2013).

    Google Scholar 

  21. Myers, D. C., Sepich, D. S. & Solnica-Krezel, L. Bmp activity gradient regulates convergent extension during zebrafish gastrulation. Dev. Biol. 243, 81–98 (2002).

    Google Scholar 

  22. Ninomiya, H., Elinson, R. P. & Winklbauer, R. Antero-posterior tissue polarity links mesoderm convergent extension to axial patterning. Nature 430, 364–367 (2004).

    Google Scholar 

  23. Keller, R., Shih, J., Sater, A. K. & Moreno, C. Planar induction of convergence and extension of the neural plate by the organizer of Xenopus. Dev. Dyn. 193, 218–234 (1992).

    Google Scholar 

  24. Gray, R. S., Roszko, I. & Solnica-Krezel, L. Planar cell polarity: coordinating morphogenetic cell behaviors with embryonic polarity. Dev. Cell 21, 120–133 (2011).

    Google Scholar 

  25. Wallingford, J. B., Fraser, S. E. & Harland, R. M. Convergent extension: the molecular control of polarized cell movement during embryonic development. Dev. Cell 2, 695–706 (2002).

    Google Scholar 

  26. Bastock, R., Strutt, H. & Strutt, D. Strabismus is asymmetrically localised and binds to Prickle and Dishevelled during Drosophila planar polarity patterning. Development 130, 3007–3014 (2003).

    Google Scholar 

  27. Yin, C., Kiskowski, M., Pouille, P. A., Farge, E. & Solnica-Krezel, L. Cooperation of polarized cell intercalations drives convergence and extension of presomitic mesoderm during zebrafish gastrulation. J. Cell Biol. 180, 221–232 (2008).

    Google Scholar 

  28. Ciruna, B., Jenny, A., Lee, D., Mlodzik, M. & Schier, A. F. Planar cell polarity signalling couples cell division and morphogenesis during neurulation. Nature 439, 220–224 (2006).

    Google Scholar 

  29. Butler, M. T. & Wallingford, J. B. Spatial and temporal analysis of PCP protein dynamics during neural tube closure. Elife 7, e36456 (2018).

  30. Roszko, I., Sepich, D. S., Jessen, J. R., Chandrasekhar, A. & Solnica-Krezel, L. A dynamic intracellular distribution of Vangl2 accompanies cell polarization during zebrafish gastrulation. Development 142, 2508–2520 (2015).

    Google Scholar 

  31. von der Hardt, S. et al. The Bmp gradient of the zebrafish gastrula guides migrating lateral cells by regulating cell-cell adhesion. Curr. Biol. 17, 475–487 (2007).

    Google Scholar 

  32. Constance Lane, M., Davidson, L. & Sheets, M. D. BMP antagonism by Spemann’s organizer regulates rostral–caudal fate of mesoderm. Dev. Biol. 275, 356–374 (2004).

    Google Scholar 

  33. Shi, W., Peyrot, S. M., Munro, E. & Levine, M. FGF3 in the floor plate directs notochord convergent extension in the Ciona tadpole. Development 136, 23–28 (2009).

    Google Scholar 

  34. Aamar, E. & Frank, D. Xenopus Meis3 protein forms a hindbrain-inducing center by activating FGF/MAP kinase and PCP pathways. Development 131, 153–163 (2004).

    Google Scholar 

  35. Gao, B. et al. Coordinated directional outgrowth and pattern formation by integration of Wnt5a and Fgf signaling in planar cell polarity. Development 145, dev163824 (2018).

  36. Williams, M. L. K. & Solnica-Krezel, L. Nodal and Planar Cell Polarity signaling cooperate to regulate zebrafish convergence and extension gastrulation movements. Elife 9, e54445 (2020).

  37. Luxardi, G., Marchal, L., Thomé, V. & Kodjabachian, L. Distinct Xenopus Nodal ligands sequentially induce mesendoderm and control gastrulation movements in parallel to the Wnt/PCP pathway. Development 137, 417–426 (2010).

    Google Scholar 

  38. Symes, K. & Smith, J. C. Gastrulation movements provide an early marker of mesoderm induction in Xenopus laevis. Development 101, 339–349 (1987).

  39. Minshull, J. et al. The role of cyclin synthesis, modification and destruction in the control of cell division. J. Cell Sci. Suppl. 12, 77–97 (1989).

    Google Scholar 

  40. Newport, J. & Kirschner, M. A major developmental transition in early Xenopus embryos: I. characterization and timing of cellular changes at the midblastula stage. Cell 30, 675–686 (1982).

    Google Scholar 

  41. Chen, H., Einstein, L. C., Little, S. C. & Good, M. C. Spatiotemporal patterning of zygotic genome activation in a model vertebrate embryo. Dev. Cell 49, 852–866.e857 (2019).

    Google Scholar 

  42. Chari, S.Wilky, H. Govindan, J. & Amodeo, A. A. Histone concentration regulates the cell cycle and transcription in early development. Development 146, dev177402 (2019).

  43. Joseph S. R. et al. Competition between histone and transcription factor binding regulates the onset of transcription in zebrafish embryos. Elife 6, e23326 (2017).

  44. Collart, C., Allen, G. E., Bradshaw, C. R., Smith, J. C. & Zegerman, P. Titration of four replication factors is essential for the Xenopus laevis midblastula transition. Science 341, 893–896 (2013).

    Google Scholar 

  45. Newport, J. & Kirschner, M. A major developmental transition in early Xenopus embryos: II. Control of the onset of transcription. Cell 30, 687–696 (1982).

    Google Scholar 

  46. Itoh, T. & Shinagawa, A. Timing system for the start of gastrulation in the Xenopus embryo. Dev. Growth Differ. 45, 261–273 (2003).

    Google Scholar 

  47. Kuroda, S., Satoh, T. & Shinagawa, A. Involvement of a urethane-sensitive system in timing the onset of gastrulation in Xenopus laevis embryos. Dev. Growth Differ. 43, 401–413 (2001).

    Google Scholar 

  48. Takagi, M., Shimoda, T. & Shinagawa, A. Dependence of the timing system regulating the onset of gastrulation on cytoplasmic, but not nuclear, activities in the Xenopus embryo. Dev. Growth Differ. 47, 415–422 (2005).

    Google Scholar 

  49. Hara, K., Tydeman, P. & Kirschner, M. A cytoplasmic clock with the same period as the division cycle in Xenopus eggs. Proc. Natl. Acad. Sci. USA 77, 462–466 (1980).

    Google Scholar 

  50. Chulitskaia, E. V. Desynchronization of cell divisions in the course of egg cleavage and an attempt at experimental shift of its onset. J. Embryol. Exp. Morphol. 23, 359–374 (1970).

    Google Scholar 

  51. Kobayakawa, Y. & Kubota, H. Y. Temporal pattern of cleavage and the onset of gastrulation in amphibian embryos developed from eggs with the reduced cytoplasm. J. Embryol. Exp. Morphol. 62, 83–94 (1981).

    Google Scholar 

  52. Strong, I. J. T., Lei, X., Chen, F., Yuan, K. & O’Farrell, P. H. Interphase-arrested Drosophila embryos activate zygotic gene expression and initiate mid-blastula transition events at a low nuclear-cytoplasmic ratio. PLoS Biol. 18, e3000891 (2020).

    Google Scholar 

  53. Almuedo-Castillo, M. et al. Scale-invariant patterning by size-dependent inhibition of Nodal signalling. Nat. Cell Biol. 20, 1032–1042 (2018).

    Google Scholar 

  54. Kane, D. A. et al. The zebrafish epiboly mutants. Development 123, 47–55 (1996).

    Google Scholar 

  55. Dierks, T. et al. Multiple sulfatase deficiency is caused by mutations in the gene encoding the human C(alpha)-formylglycine generating enzyme. Cell 113, 435–444 (2003).

    Google Scholar 

  56. Landgrebe, J., Dierks, T., Schmidt, B. & von Figura, K. The human SUMF1 gene, required for posttranslational sulfatase modification, defines a new gene family which is conserved from pro- to eukaryotes. Gene 316, 47–56 (2003).

    Google Scholar 

  57. Peng, J. et al. Eukaryotic formylglycine-generating enzyme catalyses a monooxygenase type of reaction. FEBS J. 282, 3262–3274 (2015).

    Google Scholar 

  58. Preusser-Kunze, A. et al. Molecular characterization of the human Calpha-formylglycine-generating enzyme. J. Biol. Chem. 280, 14900–14910 (2005).

    Google Scholar 

  59. Dickmanns, A. et al. Crystal structure of human pFGE, the paralog of the Calpha-formylglycine-generating enzyme. J. Biol. Chem. 280, 15180–15187 (2005).

    Google Scholar 

  60. Mariappan, M. et al. Expression, localization, structural, and functional characterization of pFGE, the paralog of the Calpha-formylglycine-generating enzyme. J. Biol. Chem. 280, 15173–15179 (2005).

    Google Scholar 

  61. Mariappan, M. et al. The non-catalytic N-terminal extension of formylglycine-generating enzyme is required for its biological activity and retention in the endoplasmic reticulum. J. Biol. Chem. 283, 11556–11564 (2008).

    Google Scholar 

  62. Dierks, T. et al. Molecular basis for multiple sulfatase deficiency and mechanism for formylglycine generation of the human formylglycine-generating enzyme. Cell 121, 541–552 (2005).

    Google Scholar 

  63. Roeser, D. et al. A general binding mechanism for all human sulfatases by the formylglycine-generating enzyme. Proc. Natl. Acad. Sci. USA 103, 81–86 (2006).

    Google Scholar 

  64. Sakuma, T. et al. HpSumf1 is involved in the activation of sulfatases responsible for regulation of skeletogenesis during sea urchin development. Dev. Genes Evol. 221, 157–166 (2011).

    Google Scholar 

  65. Zito, E. et al. Sulphatase activities are regulated by the interaction of sulphatase-modifying factor 1 with SUMF2. EMBO Rep. 6, 655–660 (2005).

    Google Scholar 

  66. Uchimura, K., Morimoto-Tomita, M. & Rosen, S. D. Measuring the activities of the Sulfs: two novel heparin/heparan sulfate endosulfatases. Methods Enzymol. 416, 243–253 (2006).

    Google Scholar 

  67. Ai, X. et al. QSulf1 remodels the 6-O sulfation states of cell surface heparan sulfate proteoglycans to promote Wnt signaling. J. Cell Biol. 162, 341–351 (2003).

    Google Scholar 

  68. Morimoto-Tomita, M., Uchimura, K., Werb, Z., Hemmerich, S. & Rosen, S. D. Cloning and characterization of two extracellular heparin-degrading endosulfatases in mice and humans. J. Biol. Chem. 277, 49175–49185 (2002).

    Google Scholar 

  69. Renucci, A., Lemarchandel, V. & Rosa, F. An activated form of type I serine/threonine kinase receptor TARAM-A reveals a specific signalling pathway involved in fish head organiser formation. Development 122, 3735–3743 (1996).

    Google Scholar 

  70. Titov, D. V. et al. XPB, a subunit of TFIIH, is a target of the natural product triptolide. Nat. Chem. Biol. 7, 182–188 (2011).

    Google Scholar 

  71. Emig, A. A. et al. Temporal dynamics of BMP/Nodal ratio drive tissue-specific gastrulation morphogenesis. Development 152, 1–15 (2025).

  72. Gritsman, K. et al. The EGF-CFC protein one-eyed pinhead is essential for nodal signaling. Cell 97, 121–132 (1999).

    Google Scholar 

  73. Chao, S. H. & Price, D. H. Flavopiridol inactivates P-TEFb and blocks most RNA polymerase II transcription in vivo. J. Biol. Chem. 276, 31793–31799 (2001).

    Google Scholar 

  74. White, R. J. et al. A high-resolution mRNA expression time course of embryonic development in zebrafish. Elife 6, e30860 (2017).

  75. Cosma, M. P. et al. Molecular and functional analysis of SUMF1 mutations in multiple sulfatase deficiency. Hum. Mutat. 23, 576–581 (2004).

    Google Scholar 

  76. Buono, M. & Cosma, M. P. Sulfatase activities towards the regulation of cell metabolism and signaling in mammals. Cell Mol. Life Sci. 67, 769–780 (2010).

    Google Scholar 

  77. Bojarová, P. & Williams, S. J. Sulfotransferases, sulfatases and formylglycine-generating enzymes: a sulfation fascination. Curr. Opin. Chem. Biol. 12, 573–581 (2008).

    Google Scholar 

  78. Fleming, A. et al. Unexpected Phenotype Reversion and Survival in a Zebrafish Model of Multiple Sulfatase Deficiency. Front Cell Dev. Biol. 10, 843079 (2022).

    Google Scholar 

  79. El-Brolosy, M. A. et al. Genetic compensation triggered by mutant mRNA degradation. Nature 568, 193–197 (2019).

    Google Scholar 

  80. Pauli, A. et al. Toddler: an embryonic signal that promotes cell movement via Apelin receptors. Science 343, 1248636 (2014).

    Google Scholar 

  81. Glickman, N. S., Kimmel, C. B., Jones, M. A. & Adams, R. J. Shaping the zebrafish notochord. Development 130, 873–887 (2003).

    Google Scholar 

  82. Wallingford, J. B., Sater, A. K., Uzman, J. A. & Danilchik, M. V. Inhibition of morphogenetic movement during Xenopus gastrulation by injected sulfatase: implications for anteroposterior and dorsoventral axis formation. Dev. Biol. 187, 224–235 (1997).

    Google Scholar 

  83. Fellgett, S. W., Maguire, R. J. & Pownall, M. E. Sulf1 has ligand-dependent effects on canonical and non-canonical Wnt signalling. J. Cell Sci. 128, 1408–1421 (2015).

    Google Scholar 

  84. Freeman, S. D. et al. Extracellular regulation of developmental cell signaling by XtSulf1. Dev. Biol. 320, 436–445 (2008).

    Google Scholar 

  85. Mitsunaga-Nakatsubo, K., Akimoto, Y., Kawakami, H. & Akasaka, K. Sea urchin arylsulfatase, an extracellular matrix component, is involved in gastrulation during embryogenesis. Dev. Genes Evol. 219, 281–288 (2009).

    Google Scholar 

  86. Bergeron, K. F., Xu, X. & Brandhorst, B. P. Oral-aboral patterning and gastrulation of sea urchin embryos depend on sulfated glycosaminoglycans. Mech. Dev. 128, 71–89 (2011).

    Google Scholar 

  87. Baeuerle, P. A. & Huttner, W. B. Chlorate–a potent inhibitor of protein sulfation in intact cells. Biochem Biophys. Res Commun. 141, 870–877 (1986).

    Google Scholar 

  88. Safaiyan, F. et al. Selective effects of sodium chlorate treatment on the sulfation of heparan sulfate. J. Biol. Chem. 274, 36267–36273 (1999).

    Google Scholar 

  89. Basu, A. et al. Quantitative HILIC-Q-TOF-MS analysis of glycosaminoglycans and non-reducing end carbohydrate biomarkers via glycan reductive isotopic labeling. Anal. Chem. 97, 17490–17500 (2025).

    Google Scholar 

  90. Singh, V. & Bhat, R. Proteoglycan desulfation: a critical step in oncogenesis?. Front Biosci. (Landmark Ed.) 25, 760–780 (2020).

    Google Scholar 

  91. Superina, S., Borovina, A. & Ciruna, B. Analysis of maternal-zygotic ugdh mutants reveals divergent roles for HSPGs in vertebrate embryogenesis and provides new insight into the initiation of left-right asymmetry. Dev. Biol. 387, 154–166 (2014).

    Google Scholar 

  92. Itoh, K. & Sokol, S. Y. Heparan sulfate proteoglycans are required for mesoderm formation in Xenopus embryos. Development 120, 2703–2711 (1994).

    Google Scholar 

  93. Yip, G. W., Ferretti, P. & Copp, A. J. Heparan sulphate proteoglycans and spinal neurulation in the mouse embryo. Development 129, 2109–2119 (2002).

    Google Scholar 

  94. Gupta, M. et al. Fine-tuning of Fgf8 morphogen gradient by heparan sulfate proteoglycans in the extracellular matrix. Biophys. J. 124, 996–1010 (2025).

    Google Scholar 

  95. Fürthauer, M., Van Celst, J., Thisse, C. & Thisse, B. Fgf signalling controls the dorsoventral patterning of the zebrafish embryo. Development 131, 2853–2864 (2004).

    Google Scholar 

  96. Diez-Roux, G. & Ballabio, A. Sulfatases and human disease. Annu Rev. Genom. Hum. Genet 6, 355–379 (2005).

    Google Scholar 

  97. Settembre, C. et al. Systemic inflammation and neurodegeneration in a mouse model of multiple sulfatase deficiency. Proc. Natl. Acad. Sci. USA 104, 4506–4511 (2007).

    Google Scholar 

  98. Gande, S. L. et al. Paralog of the formylglycine-generating enzyme–retention in the endoplasmic reticulum by canonical and noncanonical signals. FEBS J. 275, 1118–1130 (2008).

    Google Scholar 

  99. Milz, F. et al. Cooperation of binding sites at the hydrophilic domain of cell-surface sulfatase Sulf1 allows for dynamic interaction of the enzyme with its substrate heparan sulfate. Biochim Biophys. Acta 1830, 5287–5298 (2013).

    Google Scholar 

  100. Marques, C., Reis, C. A., Vivès, R. R. & Magalhães, A. Heparan sulfate biosynthesis and sulfation profiles as modulators of cancer signalling and progression. Front Oncol. 11, 778752 (2021).

    Google Scholar 

  101. Götting, C., Kuhn, J., Zahn, R., Brinkmann, T. & Kleesiek, K. Molecular cloning and expression of human UDP-d-Xylose:proteoglycan core protein beta-d-xylosyltransferase and its first isoform XT-II. J Mol Biol 304, 517-528 (2000).

  102. Ohkawara, B., Yamamoto, T. S., Tada, M. & Ueno, N. Role of glypican 4 in the regulation of convergent extension movements during gastrulation in Xenopus laevis. Development 130, 2129–2138 (2003).

    Google Scholar 

  103. Muñoz, R., Moreno, M., Oliva, C., Orbenes, C. & Larraín, J. Syndecan-4 regulates non-canonical Wnt signalling and is essential for convergent and extension movements in Xenopus embryos. Nat. Cell Biol. 8, 492–500 (2006).

    Google Scholar 

  104. Topczewski, J. et al. The zebrafish glypican knypek controls cell polarity during gastrulation movements of convergent extension. Dev. Cell 1, 251–264 (2001).

    Google Scholar 

  105. De Cat, B. et al. Processing by proprotein convertases is required for glypican-3 modulation of cell survival, Wnt signaling, and gastrulation movements. J. Cell Biol. 163, 625–635 (2003).

    Google Scholar 

  106. Brickman, M. C. & Gerhart, J. C. Heparitinase inhibition of mesoderm induction and gastrulation in Xenopus laevis embryos. Dev. Biol. 164, 484–501 (1994).

    Google Scholar 

  107. Moro, E. et al. A novel functional role of iduronate-2-sulfatase in zebrafish early development. Matrix Biol. 29, 43–50 (2010).

    Google Scholar 

  108. Meyers, J. R. et al. Sulf1 modulates BMP signaling and is required for somite morphogenesis and development of the horizontal myoseptum. Dev. Biol. 378, 107–121 (2013).

    Google Scholar 

  109. Colas, J. F., Launay, J. M., Vonesch, J. L., Hickel, P. & Maroteaux, L. Serotonin synchronises convergent extension of ectoderm with morphogenetic gastrulation movements in Drosophila. Mech. Dev. 87, 77–91 (1999).

    Google Scholar 

  110. Schaerlinger, B., Launay, J. M., Vonesch, J. L. & Maroteaux, L. Gain of affinity point mutation in the serotonin receptor gene 5-HT2Dro accelerates germband extension movements during Drosophila gastrulation. Dev. Dyn. 236, 991–999 (2007).

    Google Scholar 

  111. Karki, S. et al. Serotonin signaling regulates actomyosin contractility during morphogenesis in evolutionarily divergent lineages. Nat. Commun. 14, 5547 (2023).

    Google Scholar 

  112. Baeg, G. H., Lin, X., Khare, N., Baumgartner, S. & Perrimon, N. Heparan sulfate proteoglycans are critical for the organization of the extracellular distribution of Wingless. Development 128, 87–94 (2001).

    Google Scholar 

  113. Veerapathiran, S. et al. Wnt3 distribution in the zebrafish brain is determined by expression, diffusion and multiple molecular interactions. Elife 9, e59489 (2020).

  114. Ohkawara, B., Glinka, A. & Niehrs, C. Rspo3 binds syndecan 4 and induces Wnt/PCP signaling via clathrin-mediated endocytosis to promote morphogenesis. Dev. Cell 20, 303–314 (2011).

    Google Scholar 

  115. Axelrod, J. D., Miller, J. R., Shulman, J. M., Moon, R. T. & Perrimon, N. Differential recruitment of Dishevelled provides signaling specificity in the planar cell polarity and Wingless signaling pathways. Genes Dev. 12, 2610–2622 (1998).

    Google Scholar 

  116. Park, T. J., Gray, R. S., Sato, A., Habas, R. & Wallingford, J. B. Subcellular localization and signaling properties of dishevelled in developing vertebrate embryos. Curr. Biol. 15, 1039–1044 (2005).

    Google Scholar 

  117. Sarrazin, S., Lamanna, W. C. & Esko, J. D. Heparan sulfate proteoglycans. Cold Spring Harb Perspect Biol 3, 1–33 (2011).

  118. Hayashida, K., Aquino, R. S. & Park, P. W. Coreceptor functions of cell surface heparan sulfate proteoglycans. Am. J. Physiol. Cell Physiol. 322, C896–c912 (2022).

    Google Scholar 

  119. Kreuger, J., Salmivirta, M., Sturiale, L., Giménez-Gallego, G. & Lindahl, U. Sequence analysis of heparan sulfate epitopes with graded affinities for fibroblast growth factors 1 and 2 *. J. Biol. Chem. 276, 30744–30752 (2001).

    Google Scholar 

  120. Mii, Y. et al. Roles of two types of heparan sulfate clusters in Wnt distribution and signaling in Xenopus. Nat. Commun. 8, 1973 (2017).

    Google Scholar 

  121. Tao, Q. et al. Maternal wnt11 activates the canonical Wnt signaling pathway required for axis formation in Xenopus embryos. Cell 120, 857–871 (2005).

    Google Scholar 

  122. Brickman, Y. G. et al. Structural modification of fibroblast growth factor-binding heparan sulfate at a determinative stage of neural development. J. Biol. Chem. 273, 4350–4359 (1998).

    Google Scholar 

  123. Nurcombe, V., Ford, M. D., Wildschut, J. A. & Bartlett, P. F. Developmental regulation of neural response to FGF-1 and FGF-2 by heparan sulfate proteoglycan. Science 260, 103–106 (1993).

    Google Scholar 

  124. Theocharis, A. D., Skandalis, S. S., Gialeli, C. & Karamanos, N. K. Extracellular matrix structure. Adv. Drug Deliv. Rev. 97, 4–27 (2016).

    Google Scholar 

  125. Ishikawa, T. & Kramer, R. H. Sdc1 negatively modulates carcinoma cell motility and invasion. Exp. Cell Res. 316, 951–965 (2010).

    Google Scholar 

  126. Vicente, C. M., Ricci, R., Nader, H. B. & Toma, L. Syndecan-2 is upregulated in colorectal cancer cells through interactions with extracellular matrix produced by stromal fibroblasts. BMC Cell Biol. 14, 25 (2013).

    Google Scholar 

  127. Morgan, M. R., Humphries, M. J. & Bass, M. D. Synergistic control of cell adhesion by integrins and syndecans. Nat. Rev. Mol. Cell Biol. 8, 957–969 (2007).

    Google Scholar 

  128. Moon, J. J. et al. Role of cell surface heparan sulfate proteoglycans in endothelial cell migration and mechanotransduction. J. Cell Physiol. 203, 166–176 (2005).

    Google Scholar 

  129. Sanderson, R. D. et al. In Seminars In Cell & Developmental Biology. 12, 89–98 (Elsevier, 2001).

  130. Westerfield, M. The zebrafish book. A guide for the laboratory use of zebrafish (Danio rerio) 4th edition (Univ. of Oregon Press, Eugene, Oregon, USA, 2000).

  131. Kimmel, C. B., Ballard, W. W., Kimmel, S. R., Ullmann, B. & Schilling, T. F. Stages of embryonic development of the zebrafish. Dev.l Dyn. 203, 253–310 (1995).

    Google Scholar 

  132. Zhang, J., Talbot, W. S. & Schier, A. F. Positional cloning identifies zebrafish one-eyed pinhead as a permissive EGF-related ligand required during gastrulation. Cell 92, 241–251 (1998).

    Google Scholar 

  133. Moreno-Mateos, M. A. et al. CRISPRscan: designing highly efficient sgRNAs for CRISPR-Cas9 targeting in vivo. Nat. Methods 12, 982–988 (2015).

    Google Scholar 

  134. Burger, A. et al. Maximizing mutagenesis with solubilized CRISPR-Cas9 ribonucleoprotein complexes. Development 143, 2025–2037 (2016).

    Google Scholar 

  135. Guschin, D. Y. et al. A rapid and general assay for monitoring endogenous gene modification. Methods Mol. Biol. 649, 247–256 (2010).

    Google Scholar 

  136. Procter, J. B. et al. Alignment of biological sequences with Jalview. Methods Mol. Biol. 2231, 203–224 (2021).

    Google Scholar 

  137. Sampath, K. et al. Induction of the zebrafish ventral brain and floorplate requires cyclops/nodal signalling. Nature 395, 185–189 (1998).

    Google Scholar 

  138. Gibson, D. G. et al. Enzymatic assembly of DNA molecules up to several hundred kilobases. Nat. Methods 6, 343–345 (2009).

    Google Scholar 

  139. Williams, B. B. et al. VANGL2 regulates membrane trafficking of MMP14 to control cell polarity and migration. J. Cell Sci. 125, 2141–2147 (2012).

    Google Scholar 

  140. Thisse, C. & Thisse, B. High-resolution in situ hybridization to whole-mount zebrafish embryos. Nat. Protoc. 3, 59–69 (2008).

    Google Scholar 

  141. Alaniz Emig, A. & Williams, M. L. K. Generation of naïve blastoderm explants from zebrafish embryos. J. Vis. Exp. https://doi.org/10.3791/62797 (2021).

  142. Pachitariu, M. & Stringer, C. Cellpose 2.0: how to train your own model. Nat. Methods 19, 1634–1641 (2022).

    Google Scholar 

  143. Ershov, D. et al. TrackMate 7: integrating state-of-the-art segmentation algorithms into tracking pipelines. Nat. Methods 19, 829–832 (2022).

    Google Scholar 

  144. Watanabe, Y., Aoki-Kinoshita, K. F., Ishihama, Y. & Okuda, S. GlycoPOST realizes FAIR principles for glycomics mass spectrometry data. Nucleic Acids Res 49, D1523–d1528 (2021).

    Google Scholar 

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Acknowledgements

We thank Dr. Lila Solnica-Krezel for sharing plasmids and WISH probes, the BCM Center for Comparative Medicine for taking excellent care of our fish, and the Zebrafish International Resource Center for preserving and distributing fish lines used here and by countless members of the community. Thanks also to all members of the Williams lab for their help and feedback on this project, and to Drs. Maria Cecilia Cirio and Lance Davidson for their thoughtful comments on the manuscript. This work was supported by NIH/NICHD grants R00HD091386 and R01HD104784 to M.K.W. The glycosaminoglycan disaccharide analyses were supported by NIH grant R35GM150736 to R.J.W., and those performed at the CCRC were partially supported by NIH grant R24GM137782 to Parastoo Azadi. G.K.B. was supported by a Bourses d’excellence (Université de Montréal) and a FRQ Doctoral Scholarship. CIHR grants (PJT-178037, PJT-204048) and FRQS J1 and J2 awards provided support for R.M.J. S.G. and C.C. were partially supported by CPRIT RP210227 and RP200504, NIH/NCI P30 shared resource grant CA125123, NIH/NIEHS P42 ES027725 and P30 ES030285. Data analysis was performed on the HPC cluster that is managed by the Biostatistics and Informatics Shared Resource (BISR) and supported by an NIH S10 Shared Instrument Grant S10-OD032185, NCI P30-CA125123 and Institutional funds from the Dan L Duncan Comprehensive Cancer Center and Baylor College of Medicine.

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Authors and Affiliations

  1. Center for Precision Environmental Health, Baylor College of Medicine, Houston, TX, USA

    Ailen Soledad Cervino, Sandra L. Grimm, Cristian Coarfa & Margot Kossmann Williams

  2. Department of Molecular & Cellular Biology, Baylor College of Medicine, Houston, TX, USA

    Ailen Soledad Cervino, Sandra L. Grimm, Cristian Coarfa & Margot Kossmann Williams

  3. Complex Carbohydrate Research Center, University of Georgia, Athens, GA, USA

    Amrita Basu & Ryan J. Weiss

  4. Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA, USA

    Ryan J. Weiss

  5. Centre de Recherche Azrieli, Centre Hospitalier Universitaire Sainte-Justine, Montréal, QC, Canada

    Gursimran Kaur Bajwa & Rubén Marín-Juez

  6. Department of Pathology and Cell Biology, Faculty of Medicine, Université de Montréal, Montréal, QC, Canada

    Gursimran Kaur Bajwa & Rubén Marín-Juez

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  1. Ailen Soledad Cervino
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Contributions

A.S.C. and M.K.W. conceived of the project. A.S.C. and M.K.W. performed zebrafish experiments, R.J.W. and A.B. performed HS disaccharide profiling, and R.M.J. and G.K.B. generated the sulf1 deletion line. S.G. and C.C. performed bioinformatic analysis. A.S.C and M.K.W. wrote the original manuscript. All authors reviewed the manuscript.

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Correspondence to Margot Kossmann Williams.

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Cervino, A.S., Basu, A., Weiss, R.J. et al. Sulfatase modifying factors control the timing of zebrafish convergence and extension morphogenesis. Nat Commun (2026). https://doi.org/10.1038/s41467-026-70804-6

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  • Received: 24 October 2025

  • Accepted: 04 March 2026

  • Published: 31 March 2026

  • DOI: https://doi.org/10.1038/s41467-026-70804-6

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