Abstract
Convergence and extension (C&E) cell movements that elongate the primary embryonic axis are precisely timed during vertebrate gastrulation, but mechanisms controlling their onset remain unknown. Using zebrafish embryonic explants that recapitulate C&E and its timing, we identified sulfatase modifying factor 2 (sumf2) as a candidate trigger gene for C&E onset. sumf2 and its paralog sumf1 encode negative and positive sulfatase regulators, respectively, whose expression levels invert and increase heparan sulfate sulfation during gastrulation. Overexpressing sumf1 or sumf2 causes delayed or precocious C&E, respectively, whereas their loss shifts C&E timing in the opposite direction. We identified Sulf1, a modifier of heparan sulfate proteoglycans (HSPGs), as their key downstream effector and found that altering heparan sulfate sulfation levels shifts C&E onset and suppresses sumf1 and sumf2 mutant phenotypes. This work supports a model in which sumf2 expression reduces sulfatase activity, rewriting HSPG sulfation patterns to promote the onset of C&E morphogenesis.
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Data availability
Raw RNA-sequencing data were previously published71 and are available in NCBI Gene Expression Omnibus under accession number GSE246158. Raw data for LC-MS analysis of glycosaminoglycans generated in this study are available at GlycoPOST144 under project ID GPST000676. All image and gene expression analysis data generated for this study are available in the Supplementary and Source Data files. Source data are provided with this paper.
References
Smith, K. K. Time’s arrow: heterochrony and the evolution of development. Int J. Dev. Biol. 47, 613–621 (2003).
Smith, K. K. Sequence heterochrony and the evolution of development. J. Morphol. 252, 82–97 (2002).
Petridou, N. I., Grigolon, S., Salbreux, G., Hannezo, E. & Heisenberg, C. P. Fluidization-mediated tissue spreading by mitotic cell rounding and non-canonical Wnt signalling. Nat. Cell Biol. 21, 169–178 (2019).
Petridou, N. I., Corominas-Murtra, B., Heisenberg, C. P. & Hannezo, E. Rigidity percolation uncovers a structural basis for embryonic tissue phase transitions. Cell 184, 1914–1928.e1919 (2021).
Hagos, E. G. & Dougan, S. T. Time-dependent patterning of the mesoderm and endoderm by Nodal signals in zebrafish. BMC Dev. Biol. 7, 22 (2007).
Pinheiro, D., Kardos, R. & Hannezo, ÉH. Carl-Philipp, Morphogen gradient orchestrates pattern-preserving tissue morphogenesisvia motility-driven unjamming. Nat. Phys. 18, 1482–1493 (2022).
Liu, Z., Woo, S. & Weiner, O. D. Nodal signaling has dual roles in fate specification and directed migration during germ layer segregation in zebrafish. Development 145, dev163535 (2018).
Moriyama, Y., Mitsui, T. & Heisenberg, C. P. Hoxb genes determine the timing of cell ingression by regulating cell surface fluctuations during zebrafish gastrulation. Development 152, dev204261 (2025).
Iimura, T. & Pourquié, O. Collinear activation of Hoxb genes during gastrulation is linked to mesoderm cell ingression. Nature 442, 568–571 (2006).
Wallingford, J. B. & Harland, R. M. Xenopus Dishevelled signaling regulates both neural and mesodermal convergent extension: parallel forces elongating the body axis. Development 128, 2581–2592 (2001).
Wallingford, J. B. & Harland, R. M. Neural tube closure requires Dishevelled-dependent convergent extension of the midline. Development 129, 5815–5825 (2002).
Davidson, L. A. & Keller, R. E. Neural tube closure in Xenopus laevis involves medial migration, directed protrusive activity, cell intercalation and convergent extension. Development 126, 4547–4556 (1999).
Keller, R., Davidson, L. A. & Shook, D. R. How we are shaped: the biomechanics of gastrulation. Differentiation 71, 171–205 (2003).
Keller, R. et al. Mechanisms of convergence and extension by cell intercalation. Philos. Trans. R. Soc. Lond. B Biol. Sci. 355, 897–922 (2000).
Huebner, R. J. & Wallingford, J. B. Coming to consensus: a unifying model emerges for convergent extension. Dev. Cell 46, 389–396 (2018).
Shih, J. & Keller, R. Cell motility driving mediolateral intercalation in explants of Xenopus laevis. Development 116, 901–914 (1992).
Shih, J. & Keller, R. Patterns of cell motility in the organizer and dorsal mesoderm of Xenopus laevis. Development 116, 915–930 (1992).
Concha, M. L. & Adams, R. J. Oriented cell divisions and cellular morphogenesis in the zebrafish gastrula and neurula: a time-lapse analysis. Development 125, 983–994 (1998).
Sepich, D. S., Calmelet, C., Kiskowski, M. & Solnica-Krezel, L. Initiation of convergence and extension movements of lateral mesoderm during zebrafish gastrulation. Dev. Dyn. 234, 279–292 (2005).
Schmid, B. et al. High-speed panoramic light-sheet microscopy reveals global endodermal cell dynamics. Nat. Commun. 4, 2207 (2013).
Myers, D. C., Sepich, D. S. & Solnica-Krezel, L. Bmp activity gradient regulates convergent extension during zebrafish gastrulation. Dev. Biol. 243, 81–98 (2002).
Ninomiya, H., Elinson, R. P. & Winklbauer, R. Antero-posterior tissue polarity links mesoderm convergent extension to axial patterning. Nature 430, 364–367 (2004).
Keller, R., Shih, J., Sater, A. K. & Moreno, C. Planar induction of convergence and extension of the neural plate by the organizer of Xenopus. Dev. Dyn. 193, 218–234 (1992).
Gray, R. S., Roszko, I. & Solnica-Krezel, L. Planar cell polarity: coordinating morphogenetic cell behaviors with embryonic polarity. Dev. Cell 21, 120–133 (2011).
Wallingford, J. B., Fraser, S. E. & Harland, R. M. Convergent extension: the molecular control of polarized cell movement during embryonic development. Dev. Cell 2, 695–706 (2002).
Bastock, R., Strutt, H. & Strutt, D. Strabismus is asymmetrically localised and binds to Prickle and Dishevelled during Drosophila planar polarity patterning. Development 130, 3007–3014 (2003).
Yin, C., Kiskowski, M., Pouille, P. A., Farge, E. & Solnica-Krezel, L. Cooperation of polarized cell intercalations drives convergence and extension of presomitic mesoderm during zebrafish gastrulation. J. Cell Biol. 180, 221–232 (2008).
Ciruna, B., Jenny, A., Lee, D., Mlodzik, M. & Schier, A. F. Planar cell polarity signalling couples cell division and morphogenesis during neurulation. Nature 439, 220–224 (2006).
Butler, M. T. & Wallingford, J. B. Spatial and temporal analysis of PCP protein dynamics during neural tube closure. Elife 7, e36456 (2018).
Roszko, I., Sepich, D. S., Jessen, J. R., Chandrasekhar, A. & Solnica-Krezel, L. A dynamic intracellular distribution of Vangl2 accompanies cell polarization during zebrafish gastrulation. Development 142, 2508–2520 (2015).
von der Hardt, S. et al. The Bmp gradient of the zebrafish gastrula guides migrating lateral cells by regulating cell-cell adhesion. Curr. Biol. 17, 475–487 (2007).
Constance Lane, M., Davidson, L. & Sheets, M. D. BMP antagonism by Spemann’s organizer regulates rostral–caudal fate of mesoderm. Dev. Biol. 275, 356–374 (2004).
Shi, W., Peyrot, S. M., Munro, E. & Levine, M. FGF3 in the floor plate directs notochord convergent extension in the Ciona tadpole. Development 136, 23–28 (2009).
Aamar, E. & Frank, D. Xenopus Meis3 protein forms a hindbrain-inducing center by activating FGF/MAP kinase and PCP pathways. Development 131, 153–163 (2004).
Gao, B. et al. Coordinated directional outgrowth and pattern formation by integration of Wnt5a and Fgf signaling in planar cell polarity. Development 145, dev163824 (2018).
Williams, M. L. K. & Solnica-Krezel, L. Nodal and Planar Cell Polarity signaling cooperate to regulate zebrafish convergence and extension gastrulation movements. Elife 9, e54445 (2020).
Luxardi, G., Marchal, L., Thomé, V. & Kodjabachian, L. Distinct Xenopus Nodal ligands sequentially induce mesendoderm and control gastrulation movements in parallel to the Wnt/PCP pathway. Development 137, 417–426 (2010).
Symes, K. & Smith, J. C. Gastrulation movements provide an early marker of mesoderm induction in Xenopus laevis. Development 101, 339–349 (1987).
Minshull, J. et al. The role of cyclin synthesis, modification and destruction in the control of cell division. J. Cell Sci. Suppl. 12, 77–97 (1989).
Newport, J. & Kirschner, M. A major developmental transition in early Xenopus embryos: I. characterization and timing of cellular changes at the midblastula stage. Cell 30, 675–686 (1982).
Chen, H., Einstein, L. C., Little, S. C. & Good, M. C. Spatiotemporal patterning of zygotic genome activation in a model vertebrate embryo. Dev. Cell 49, 852–866.e857 (2019).
Chari, S.Wilky, H. Govindan, J. & Amodeo, A. A. Histone concentration regulates the cell cycle and transcription in early development. Development 146, dev177402 (2019).
Joseph S. R. et al. Competition between histone and transcription factor binding regulates the onset of transcription in zebrafish embryos. Elife 6, e23326 (2017).
Collart, C., Allen, G. E., Bradshaw, C. R., Smith, J. C. & Zegerman, P. Titration of four replication factors is essential for the Xenopus laevis midblastula transition. Science 341, 893–896 (2013).
Newport, J. & Kirschner, M. A major developmental transition in early Xenopus embryos: II. Control of the onset of transcription. Cell 30, 687–696 (1982).
Itoh, T. & Shinagawa, A. Timing system for the start of gastrulation in the Xenopus embryo. Dev. Growth Differ. 45, 261–273 (2003).
Kuroda, S., Satoh, T. & Shinagawa, A. Involvement of a urethane-sensitive system in timing the onset of gastrulation in Xenopus laevis embryos. Dev. Growth Differ. 43, 401–413 (2001).
Takagi, M., Shimoda, T. & Shinagawa, A. Dependence of the timing system regulating the onset of gastrulation on cytoplasmic, but not nuclear, activities in the Xenopus embryo. Dev. Growth Differ. 47, 415–422 (2005).
Hara, K., Tydeman, P. & Kirschner, M. A cytoplasmic clock with the same period as the division cycle in Xenopus eggs. Proc. Natl. Acad. Sci. USA 77, 462–466 (1980).
Chulitskaia, E. V. Desynchronization of cell divisions in the course of egg cleavage and an attempt at experimental shift of its onset. J. Embryol. Exp. Morphol. 23, 359–374 (1970).
Kobayakawa, Y. & Kubota, H. Y. Temporal pattern of cleavage and the onset of gastrulation in amphibian embryos developed from eggs with the reduced cytoplasm. J. Embryol. Exp. Morphol. 62, 83–94 (1981).
Strong, I. J. T., Lei, X., Chen, F., Yuan, K. & O’Farrell, P. H. Interphase-arrested Drosophila embryos activate zygotic gene expression and initiate mid-blastula transition events at a low nuclear-cytoplasmic ratio. PLoS Biol. 18, e3000891 (2020).
Almuedo-Castillo, M. et al. Scale-invariant patterning by size-dependent inhibition of Nodal signalling. Nat. Cell Biol. 20, 1032–1042 (2018).
Kane, D. A. et al. The zebrafish epiboly mutants. Development 123, 47–55 (1996).
Dierks, T. et al. Multiple sulfatase deficiency is caused by mutations in the gene encoding the human C(alpha)-formylglycine generating enzyme. Cell 113, 435–444 (2003).
Landgrebe, J., Dierks, T., Schmidt, B. & von Figura, K. The human SUMF1 gene, required for posttranslational sulfatase modification, defines a new gene family which is conserved from pro- to eukaryotes. Gene 316, 47–56 (2003).
Peng, J. et al. Eukaryotic formylglycine-generating enzyme catalyses a monooxygenase type of reaction. FEBS J. 282, 3262–3274 (2015).
Preusser-Kunze, A. et al. Molecular characterization of the human Calpha-formylglycine-generating enzyme. J. Biol. Chem. 280, 14900–14910 (2005).
Dickmanns, A. et al. Crystal structure of human pFGE, the paralog of the Calpha-formylglycine-generating enzyme. J. Biol. Chem. 280, 15180–15187 (2005).
Mariappan, M. et al. Expression, localization, structural, and functional characterization of pFGE, the paralog of the Calpha-formylglycine-generating enzyme. J. Biol. Chem. 280, 15173–15179 (2005).
Mariappan, M. et al. The non-catalytic N-terminal extension of formylglycine-generating enzyme is required for its biological activity and retention in the endoplasmic reticulum. J. Biol. Chem. 283, 11556–11564 (2008).
Dierks, T. et al. Molecular basis for multiple sulfatase deficiency and mechanism for formylglycine generation of the human formylglycine-generating enzyme. Cell 121, 541–552 (2005).
Roeser, D. et al. A general binding mechanism for all human sulfatases by the formylglycine-generating enzyme. Proc. Natl. Acad. Sci. USA 103, 81–86 (2006).
Sakuma, T. et al. HpSumf1 is involved in the activation of sulfatases responsible for regulation of skeletogenesis during sea urchin development. Dev. Genes Evol. 221, 157–166 (2011).
Zito, E. et al. Sulphatase activities are regulated by the interaction of sulphatase-modifying factor 1 with SUMF2. EMBO Rep. 6, 655–660 (2005).
Uchimura, K., Morimoto-Tomita, M. & Rosen, S. D. Measuring the activities of the Sulfs: two novel heparin/heparan sulfate endosulfatases. Methods Enzymol. 416, 243–253 (2006).
Ai, X. et al. QSulf1 remodels the 6-O sulfation states of cell surface heparan sulfate proteoglycans to promote Wnt signaling. J. Cell Biol. 162, 341–351 (2003).
Morimoto-Tomita, M., Uchimura, K., Werb, Z., Hemmerich, S. & Rosen, S. D. Cloning and characterization of two extracellular heparin-degrading endosulfatases in mice and humans. J. Biol. Chem. 277, 49175–49185 (2002).
Renucci, A., Lemarchandel, V. & Rosa, F. An activated form of type I serine/threonine kinase receptor TARAM-A reveals a specific signalling pathway involved in fish head organiser formation. Development 122, 3735–3743 (1996).
Titov, D. V. et al. XPB, a subunit of TFIIH, is a target of the natural product triptolide. Nat. Chem. Biol. 7, 182–188 (2011).
Emig, A. A. et al. Temporal dynamics of BMP/Nodal ratio drive tissue-specific gastrulation morphogenesis. Development 152, 1–15 (2025).
Gritsman, K. et al. The EGF-CFC protein one-eyed pinhead is essential for nodal signaling. Cell 97, 121–132 (1999).
Chao, S. H. & Price, D. H. Flavopiridol inactivates P-TEFb and blocks most RNA polymerase II transcription in vivo. J. Biol. Chem. 276, 31793–31799 (2001).
White, R. J. et al. A high-resolution mRNA expression time course of embryonic development in zebrafish. Elife 6, e30860 (2017).
Cosma, M. P. et al. Molecular and functional analysis of SUMF1 mutations in multiple sulfatase deficiency. Hum. Mutat. 23, 576–581 (2004).
Buono, M. & Cosma, M. P. Sulfatase activities towards the regulation of cell metabolism and signaling in mammals. Cell Mol. Life Sci. 67, 769–780 (2010).
Bojarová, P. & Williams, S. J. Sulfotransferases, sulfatases and formylglycine-generating enzymes: a sulfation fascination. Curr. Opin. Chem. Biol. 12, 573–581 (2008).
Fleming, A. et al. Unexpected Phenotype Reversion and Survival in a Zebrafish Model of Multiple Sulfatase Deficiency. Front Cell Dev. Biol. 10, 843079 (2022).
El-Brolosy, M. A. et al. Genetic compensation triggered by mutant mRNA degradation. Nature 568, 193–197 (2019).
Pauli, A. et al. Toddler: an embryonic signal that promotes cell movement via Apelin receptors. Science 343, 1248636 (2014).
Glickman, N. S., Kimmel, C. B., Jones, M. A. & Adams, R. J. Shaping the zebrafish notochord. Development 130, 873–887 (2003).
Wallingford, J. B., Sater, A. K., Uzman, J. A. & Danilchik, M. V. Inhibition of morphogenetic movement during Xenopus gastrulation by injected sulfatase: implications for anteroposterior and dorsoventral axis formation. Dev. Biol. 187, 224–235 (1997).
Fellgett, S. W., Maguire, R. J. & Pownall, M. E. Sulf1 has ligand-dependent effects on canonical and non-canonical Wnt signalling. J. Cell Sci. 128, 1408–1421 (2015).
Freeman, S. D. et al. Extracellular regulation of developmental cell signaling by XtSulf1. Dev. Biol. 320, 436–445 (2008).
Mitsunaga-Nakatsubo, K., Akimoto, Y., Kawakami, H. & Akasaka, K. Sea urchin arylsulfatase, an extracellular matrix component, is involved in gastrulation during embryogenesis. Dev. Genes Evol. 219, 281–288 (2009).
Bergeron, K. F., Xu, X. & Brandhorst, B. P. Oral-aboral patterning and gastrulation of sea urchin embryos depend on sulfated glycosaminoglycans. Mech. Dev. 128, 71–89 (2011).
Baeuerle, P. A. & Huttner, W. B. Chlorate–a potent inhibitor of protein sulfation in intact cells. Biochem Biophys. Res Commun. 141, 870–877 (1986).
Safaiyan, F. et al. Selective effects of sodium chlorate treatment on the sulfation of heparan sulfate. J. Biol. Chem. 274, 36267–36273 (1999).
Basu, A. et al. Quantitative HILIC-Q-TOF-MS analysis of glycosaminoglycans and non-reducing end carbohydrate biomarkers via glycan reductive isotopic labeling. Anal. Chem. 97, 17490–17500 (2025).
Singh, V. & Bhat, R. Proteoglycan desulfation: a critical step in oncogenesis?. Front Biosci. (Landmark Ed.) 25, 760–780 (2020).
Superina, S., Borovina, A. & Ciruna, B. Analysis of maternal-zygotic ugdh mutants reveals divergent roles for HSPGs in vertebrate embryogenesis and provides new insight into the initiation of left-right asymmetry. Dev. Biol. 387, 154–166 (2014).
Itoh, K. & Sokol, S. Y. Heparan sulfate proteoglycans are required for mesoderm formation in Xenopus embryos. Development 120, 2703–2711 (1994).
Yip, G. W., Ferretti, P. & Copp, A. J. Heparan sulphate proteoglycans and spinal neurulation in the mouse embryo. Development 129, 2109–2119 (2002).
Gupta, M. et al. Fine-tuning of Fgf8 morphogen gradient by heparan sulfate proteoglycans in the extracellular matrix. Biophys. J. 124, 996–1010 (2025).
Fürthauer, M., Van Celst, J., Thisse, C. & Thisse, B. Fgf signalling controls the dorsoventral patterning of the zebrafish embryo. Development 131, 2853–2864 (2004).
Diez-Roux, G. & Ballabio, A. Sulfatases and human disease. Annu Rev. Genom. Hum. Genet 6, 355–379 (2005).
Settembre, C. et al. Systemic inflammation and neurodegeneration in a mouse model of multiple sulfatase deficiency. Proc. Natl. Acad. Sci. USA 104, 4506–4511 (2007).
Gande, S. L. et al. Paralog of the formylglycine-generating enzyme–retention in the endoplasmic reticulum by canonical and noncanonical signals. FEBS J. 275, 1118–1130 (2008).
Milz, F. et al. Cooperation of binding sites at the hydrophilic domain of cell-surface sulfatase Sulf1 allows for dynamic interaction of the enzyme with its substrate heparan sulfate. Biochim Biophys. Acta 1830, 5287–5298 (2013).
Marques, C., Reis, C. A., Vivès, R. R. & Magalhães, A. Heparan sulfate biosynthesis and sulfation profiles as modulators of cancer signalling and progression. Front Oncol. 11, 778752 (2021).
Götting, C., Kuhn, J., Zahn, R., Brinkmann, T. & Kleesiek, K. Molecular cloning and expression of human UDP-d-Xylose:proteoglycan core protein beta-d-xylosyltransferase and its first isoform XT-II. J Mol Biol 304, 517-528 (2000).
Ohkawara, B., Yamamoto, T. S., Tada, M. & Ueno, N. Role of glypican 4 in the regulation of convergent extension movements during gastrulation in Xenopus laevis. Development 130, 2129–2138 (2003).
Muñoz, R., Moreno, M., Oliva, C., Orbenes, C. & Larraín, J. Syndecan-4 regulates non-canonical Wnt signalling and is essential for convergent and extension movements in Xenopus embryos. Nat. Cell Biol. 8, 492–500 (2006).
Topczewski, J. et al. The zebrafish glypican knypek controls cell polarity during gastrulation movements of convergent extension. Dev. Cell 1, 251–264 (2001).
De Cat, B. et al. Processing by proprotein convertases is required for glypican-3 modulation of cell survival, Wnt signaling, and gastrulation movements. J. Cell Biol. 163, 625–635 (2003).
Brickman, M. C. & Gerhart, J. C. Heparitinase inhibition of mesoderm induction and gastrulation in Xenopus laevis embryos. Dev. Biol. 164, 484–501 (1994).
Moro, E. et al. A novel functional role of iduronate-2-sulfatase in zebrafish early development. Matrix Biol. 29, 43–50 (2010).
Meyers, J. R. et al. Sulf1 modulates BMP signaling and is required for somite morphogenesis and development of the horizontal myoseptum. Dev. Biol. 378, 107–121 (2013).
Colas, J. F., Launay, J. M., Vonesch, J. L., Hickel, P. & Maroteaux, L. Serotonin synchronises convergent extension of ectoderm with morphogenetic gastrulation movements in Drosophila. Mech. Dev. 87, 77–91 (1999).
Schaerlinger, B., Launay, J. M., Vonesch, J. L. & Maroteaux, L. Gain of affinity point mutation in the serotonin receptor gene 5-HT2Dro accelerates germband extension movements during Drosophila gastrulation. Dev. Dyn. 236, 991–999 (2007).
Karki, S. et al. Serotonin signaling regulates actomyosin contractility during morphogenesis in evolutionarily divergent lineages. Nat. Commun. 14, 5547 (2023).
Baeg, G. H., Lin, X., Khare, N., Baumgartner, S. & Perrimon, N. Heparan sulfate proteoglycans are critical for the organization of the extracellular distribution of Wingless. Development 128, 87–94 (2001).
Veerapathiran, S. et al. Wnt3 distribution in the zebrafish brain is determined by expression, diffusion and multiple molecular interactions. Elife 9, e59489 (2020).
Ohkawara, B., Glinka, A. & Niehrs, C. Rspo3 binds syndecan 4 and induces Wnt/PCP signaling via clathrin-mediated endocytosis to promote morphogenesis. Dev. Cell 20, 303–314 (2011).
Axelrod, J. D., Miller, J. R., Shulman, J. M., Moon, R. T. & Perrimon, N. Differential recruitment of Dishevelled provides signaling specificity in the planar cell polarity and Wingless signaling pathways. Genes Dev. 12, 2610–2622 (1998).
Park, T. J., Gray, R. S., Sato, A., Habas, R. & Wallingford, J. B. Subcellular localization and signaling properties of dishevelled in developing vertebrate embryos. Curr. Biol. 15, 1039–1044 (2005).
Sarrazin, S., Lamanna, W. C. & Esko, J. D. Heparan sulfate proteoglycans. Cold Spring Harb Perspect Biol 3, 1–33 (2011).
Hayashida, K., Aquino, R. S. & Park, P. W. Coreceptor functions of cell surface heparan sulfate proteoglycans. Am. J. Physiol. Cell Physiol. 322, C896–c912 (2022).
Kreuger, J., Salmivirta, M., Sturiale, L., Giménez-Gallego, G. & Lindahl, U. Sequence analysis of heparan sulfate epitopes with graded affinities for fibroblast growth factors 1 and 2 *. J. Biol. Chem. 276, 30744–30752 (2001).
Mii, Y. et al. Roles of two types of heparan sulfate clusters in Wnt distribution and signaling in Xenopus. Nat. Commun. 8, 1973 (2017).
Tao, Q. et al. Maternal wnt11 activates the canonical Wnt signaling pathway required for axis formation in Xenopus embryos. Cell 120, 857–871 (2005).
Brickman, Y. G. et al. Structural modification of fibroblast growth factor-binding heparan sulfate at a determinative stage of neural development. J. Biol. Chem. 273, 4350–4359 (1998).
Nurcombe, V., Ford, M. D., Wildschut, J. A. & Bartlett, P. F. Developmental regulation of neural response to FGF-1 and FGF-2 by heparan sulfate proteoglycan. Science 260, 103–106 (1993).
Theocharis, A. D., Skandalis, S. S., Gialeli, C. & Karamanos, N. K. Extracellular matrix structure. Adv. Drug Deliv. Rev. 97, 4–27 (2016).
Ishikawa, T. & Kramer, R. H. Sdc1 negatively modulates carcinoma cell motility and invasion. Exp. Cell Res. 316, 951–965 (2010).
Vicente, C. M., Ricci, R., Nader, H. B. & Toma, L. Syndecan-2 is upregulated in colorectal cancer cells through interactions with extracellular matrix produced by stromal fibroblasts. BMC Cell Biol. 14, 25 (2013).
Morgan, M. R., Humphries, M. J. & Bass, M. D. Synergistic control of cell adhesion by integrins and syndecans. Nat. Rev. Mol. Cell Biol. 8, 957–969 (2007).
Moon, J. J. et al. Role of cell surface heparan sulfate proteoglycans in endothelial cell migration and mechanotransduction. J. Cell Physiol. 203, 166–176 (2005).
Sanderson, R. D. et al. In Seminars In Cell & Developmental Biology. 12, 89–98 (Elsevier, 2001).
Westerfield, M. The zebrafish book. A guide for the laboratory use of zebrafish (Danio rerio) 4th edition (Univ. of Oregon Press, Eugene, Oregon, USA, 2000).
Kimmel, C. B., Ballard, W. W., Kimmel, S. R., Ullmann, B. & Schilling, T. F. Stages of embryonic development of the zebrafish. Dev.l Dyn. 203, 253–310 (1995).
Zhang, J., Talbot, W. S. & Schier, A. F. Positional cloning identifies zebrafish one-eyed pinhead as a permissive EGF-related ligand required during gastrulation. Cell 92, 241–251 (1998).
Moreno-Mateos, M. A. et al. CRISPRscan: designing highly efficient sgRNAs for CRISPR-Cas9 targeting in vivo. Nat. Methods 12, 982–988 (2015).
Burger, A. et al. Maximizing mutagenesis with solubilized CRISPR-Cas9 ribonucleoprotein complexes. Development 143, 2025–2037 (2016).
Guschin, D. Y. et al. A rapid and general assay for monitoring endogenous gene modification. Methods Mol. Biol. 649, 247–256 (2010).
Procter, J. B. et al. Alignment of biological sequences with Jalview. Methods Mol. Biol. 2231, 203–224 (2021).
Sampath, K. et al. Induction of the zebrafish ventral brain and floorplate requires cyclops/nodal signalling. Nature 395, 185–189 (1998).
Gibson, D. G. et al. Enzymatic assembly of DNA molecules up to several hundred kilobases. Nat. Methods 6, 343–345 (2009).
Williams, B. B. et al. VANGL2 regulates membrane trafficking of MMP14 to control cell polarity and migration. J. Cell Sci. 125, 2141–2147 (2012).
Thisse, C. & Thisse, B. High-resolution in situ hybridization to whole-mount zebrafish embryos. Nat. Protoc. 3, 59–69 (2008).
Alaniz Emig, A. & Williams, M. L. K. Generation of naïve blastoderm explants from zebrafish embryos. J. Vis. Exp. https://doi.org/10.3791/62797 (2021).
Pachitariu, M. & Stringer, C. Cellpose 2.0: how to train your own model. Nat. Methods 19, 1634–1641 (2022).
Ershov, D. et al. TrackMate 7: integrating state-of-the-art segmentation algorithms into tracking pipelines. Nat. Methods 19, 829–832 (2022).
Watanabe, Y., Aoki-Kinoshita, K. F., Ishihama, Y. & Okuda, S. GlycoPOST realizes FAIR principles for glycomics mass spectrometry data. Nucleic Acids Res 49, D1523–d1528 (2021).
Acknowledgements
We thank Dr. Lila Solnica-Krezel for sharing plasmids and WISH probes, the BCM Center for Comparative Medicine for taking excellent care of our fish, and the Zebrafish International Resource Center for preserving and distributing fish lines used here and by countless members of the community. Thanks also to all members of the Williams lab for their help and feedback on this project, and to Drs. Maria Cecilia Cirio and Lance Davidson for their thoughtful comments on the manuscript. This work was supported by NIH/NICHD grants R00HD091386 and R01HD104784 to M.K.W. The glycosaminoglycan disaccharide analyses were supported by NIH grant R35GM150736 to R.J.W., and those performed at the CCRC were partially supported by NIH grant R24GM137782 to Parastoo Azadi. G.K.B. was supported by a Bourses d’excellence (Université de Montréal) and a FRQ Doctoral Scholarship. CIHR grants (PJT-178037, PJT-204048) and FRQS J1 and J2 awards provided support for R.M.J. S.G. and C.C. were partially supported by CPRIT RP210227 and RP200504, NIH/NCI P30 shared resource grant CA125123, NIH/NIEHS P42 ES027725 and P30 ES030285. Data analysis was performed on the HPC cluster that is managed by the Biostatistics and Informatics Shared Resource (BISR) and supported by an NIH S10 Shared Instrument Grant S10-OD032185, NCI P30-CA125123 and Institutional funds from the Dan L Duncan Comprehensive Cancer Center and Baylor College of Medicine.
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A.S.C. and M.K.W. conceived of the project. A.S.C. and M.K.W. performed zebrafish experiments, R.J.W. and A.B. performed HS disaccharide profiling, and R.M.J. and G.K.B. generated the sulf1 deletion line. S.G. and C.C. performed bioinformatic analysis. A.S.C and M.K.W. wrote the original manuscript. All authors reviewed the manuscript.
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Cervino, A.S., Basu, A., Weiss, R.J. et al. Sulfatase modifying factors control the timing of zebrafish convergence and extension morphogenesis. Nat Commun (2026). https://doi.org/10.1038/s41467-026-70804-6
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DOI: https://doi.org/10.1038/s41467-026-70804-6


