Introduction

Tectonic plate divergence along continental rifts and the resulting breakup of stretching continents play an important role in shaping the Earth’s periodic dispersal cycles, the evolution of biota, landscapes, and climate throughout Earth history1,2. The process of rift maturation involves progressive crustal and lithospheric deformation that cascades through distinct phases3 from the stretching phase, to the necking phase, and oceanization. During the stretching phase, tectonic strain is distributed across rift-bounding (i.e., border) and intra-rift faults with minimal thinning of the crust3. The necking phase occurs when localized deformation along the rift axis enables efficient crustal thinning, reducing the crystalline crust to 15–10 km4,5. Oceanization occurs when extension is accommodated by magmatic accretion and mantle exhumation, marking the onset of seafloor spreading and complete breakup of the continental lithosphere6. Very few continental rifts are undergoing oceanization, among which are the Afar Rift7 and Red Sea8. In most active continental rifts, the modeled total strain rate9 derived from geodetic data is <65 × 10⁻⁹ yr⁻¹, excluding the Corinth Rift (Greece), which lies in the upper plate of a subduction system (Fig. 1a). These slow crustal-stretching rates, along with >20-km deep Mohorovičić discontinuity (Moho) (Fig. 1b, c), may suggest that the present-day active rifts across the world are predominantly in the stretching phase and that breakup may not be imminent.

Fig. 1: Global active and failed intracontinental rifts and the tectonic setting of the study.
Fig. 1: Global active and failed intracontinental rifts and the tectonic setting of the study.The alternative text for this image may have been generated using AI.
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a 2nd invariant of modeled strain rates for active continental rifts from ref. 9 (Supplementary Table 1). b Locations of boreholes in active and failed intracontinental rifts from ref. 59 used to extract crystalline crustal thickness and Moho depths from ref. 60 in (c, d). c Histogram of Moho depth sampled from boreholes in active intracontinental rifts. d Histogram of crystalline thickness from borehole locations in failed intracontinental rifts. e Map of eastern Africa (data from ref. 62) showing EARS faults (data from ref. 63), failed rifts (data from refs. 37,64,65), and modeled plate velocities (data from ref. 66). f Map of the Turkana Rift Zone (TRZ) showing seismic reflection survey grid used in this study and basins mapped using seismic reflection and gravity data (elevation data from ref. 61) (Supplementary Figs. 1 and 2). The location of (f) is shown as a black box in (e). g, h North-South elevation and Moho depth profiles of the EARS’ Eastern and Western Branches. Elevation data from ref. 62 and Moho data from ref. 34. The TRZ and the Afar Triangle (shaded blue) share similar rift-floor elevations and Moho depths. Profile locations are shown in (e).

The crystalline crust thickness across many failed intracontinental rifts worldwide is estimated to be >20 km (Fig. 1b–d), indicating that most ancient rifts that matured into the necking phase succeeded in breakup. Thus, of the three rift maturation phases, necking is the most significant as it accommodates the critical lithospheric weakening mechanism that initiates the transition to late-stage rifting and oceanization5,6,10. The existence of a necked crust, described as ‘necking domain’, was first identified and extensively studied within rifted margins—or “fossil rifts”11. However, the resolution of geophysical subsurface imaging at the deeply buried syn-rift sections of rifted margins is significantly degraded by signal attenuation, and exhumed outcrop analogs are rare. To date, no active continental rift has been identified as undergoing the necking phase, which has prevented empirical field study of the attendant geodynamics, surface processes, and landscape evolution peculiar to this critical phase of continental extension.

Here, we investigate the Turkana Rift Zone (TRZ) in Kenya, which hosts the shallowest Moho depth12 in the interior of the slowly-stretching East African Rift System (EARS) (Fig. 1e–h). We utilize high-resolution seismic reflection and borehole datasets to produce isopach maps of key horizons (Fig. 2, Supplementary Figs. 26). Combining these results with field observations reveals an actively necking continental rift. The rift zone is well-known for its low-elevation rift floor and shallow Moho12, similar to the Afar Triangle, which is in the most mature phase of EARS rifting and is undergoing incipient oceanization7. However, our reconstruction of the TRZ’s shallow crustal structure places constraints on its crystalline crustal thickness, which we demonstrate approaches those of the Afar13.

Fig. 2: Seismic reflection profile, bathymetry, and horizon isopach maps of the Turkana Rift Zone.
Fig. 2: Seismic reflection profile, bathymetry, and horizon isopach maps of the Turkana Rift Zone.The alternative text for this image may have been generated using AI.
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a Example of a high-quality seismic reflection profile used to map horizons and faults. The orange horizon marks the Gombe Series, which shows variable outcrop thicknesses24 of up to 100 m, whereas the blue horizon marks the top of the basement. The dashed black line in (bd) indicates the profile location. b Bathymetry of Lake Turkana from ref. 67 and large-offset faults (black) mapped in this study using seismic reflection and gravity datasets. Gray faults mapped from hillshade imagery. c Gombe Series-to-surface regional isopach map in two-way traveltime (TWTT) seconds and surface outcrop locations24. The Gombe Series erupted ~4 Ma24. The inferred subsurface extent of the Gombe Series is based on outcrop stratigraphy20. d Basement-to-surface regional isopach map in TWTT seconds and surface outcrop locations68. Contour spacing is 300 ms and bolded every 5 contours in (c, d). Maps in (bd) are displayed elevation data from ref. 61.

Results

The TRZ intersects two major rift systems—the NW-SE Mesozoic to early Cenozoic Central African Rift System (CARS) and the N-S Cenozoic EARS (Fig. 1e, Supplementary Fig. 1)—indicating at least two separate episodes of extension14. CARS rifting in the TRZ was largely amagmatic15 and persisted until ~57–45 Ma16. EARS-related faulting initiated in the TRZ at ~45–40 Ma, representing the earliest documented evidence of EARS rifting in eastern Africa17. Volcanism followed at ~37 Ma18, emplacing ~47,000 km³ of Eocene–Oligocene extrusive volcanic rocks19. Compared to CARS, EARS rifting in the TRZ is characterized by episodic, plume-derived volcanism extending through much of the Cenozoic18,20,21. Preceding the establishment of axial volcanism, the Stratoid Phase22 (~4–0.5 Ma) marks a shift to magmatism derived from decompression melting of the mantle23. The phase initiated with the basaltic eruption of the Gombe Stratoid Series22, which persisted for up to 300 thousand years24 (kyr). Our field and subsurface observations reveal previously unrecognized Mesozoic to early Cenozoic depocenters of the CARS, upon which EARS structures began to form in superposition shortly thereafter. We propose that structural and rheological inheritance from CARS rifting, coupled with the weakening effects of late Cenozoic magmatism, has driven premature necking of the TRZ, resulting in a rift development that is decoupled from the overall northward maturation trend of the EARS.

In continental rifted margins, the seismically imaged crustal architecture and associated deformational structures define rift domains in space4,11,25,26. These domains are linked to rift phases in time through the characteristic deformation mechanisms that produce the observed structures within each domain3,4,25,26. For example, the necking domain in rifted margins is primarily defined by a wedge-shaped crustal architecture, defined by the top of the crystalline crust and the Moho, in cross-sectional profile27,28 (Supplementary Fig. 7). In space, the necking domain forms during the necking phase in time as brittle and ductile deformation thins the crystalline crust from more than 15 km to 10 km4,5. In addition to geometry, thinning is quantified using the β factor, the ratio of initial, pre-rift crustal thickness to the current thickness at the rift axis29. In rifted margins, β greater than 1.5 characterizes the necking domain, whereas β values below 1.5 characterize the proximal domain, formed during the stretching phase of rifting26 (Supplementary Fig. 7).

Our depth-converted seismic reflection horizons (Supplementary Figs. 8 and 9) constrain the top of the crystalline basement, which we combined with published Moho depths12 to create a cross-sectional profile that reveals the crustal structure of the TRZ (Fig. 3) (Supplementary Information; Supplementary Data 1). Toward the rift axis, the TRZ’s crustal structure parallels that of the necking domain identified in rifted margins, thinning from over 35 km at the rift flanks to 12.7 ± 2.8 km at the rift axis, with β varying from 1.9 to 3.1 along the rift axis (Fig. 3, Supplementary Fig. 7). High β-values are co-located with modern seismicity30, indicating that present-day deformation is localized to the necked zone. This contrasts with off-axis regions exhibiting little to no present-day seismicity30. High-angle fault-bounded basins and β-values less than 1.5 characterize the crustal structure of the off-axis regions, mirroring the proximal domain of rifted margins25 (Supplementary Fig. 7). Thus, our profile indicates the presence of two distinct crustal architectures: (1) off-axis, low-β regions formed during the stretching phase but now abandoned, and (2) axial, high-β regions that continue to evolve through active necking.

Fig. 3: Crustal profile of the northern Turkana Rift Zone.
Fig. 3: Crustal profile of the northern Turkana Rift Zone.The alternative text for this image may have been generated using AI.
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a Map of the Turkana Rift Zone (TRZ) displaying the profile location and present-day seismicity. Earthquake data from ref. 30 and elevation data from ref. 61. CTC Congo-Tanzanian Craton, GB Gatome Basin, LT Lake Turkana, LR Lapur Range, LB Lotikipi Basin, MR Mogila Range, MuR Murua Rith Range, TB Turkana Basin. b Elevation profile from ref. 61 and local geological features. c Cross-sectional profile of the northern TRZ showing depth-converted basement and Gombe horizons from this study (Supplementary Data 1), Moho depths, and present-day earthquake frequency within 25 km of the profile. Moho depths from refs. 12,69 and earthquake data from ref. 30. The crustal structure is characterized by a wedge-shaped geometry formed by the top of the crystalline crust and Moho. Present-day seismicity is highest along the rift axis in the ‘necked zone.’ KRISP: Kenya Rift International Seismic Project69; NFC Necking Fault Complex. d β-factor and crustal thickness along the profile.

Conventional geodynamic models suggest that rift zones located farther from the rotation pole mature earlier due to higher plate velocities31. The TRZ, situated closer to the Nubia–Somalia Euler pole, experiences slower plate velocities than the Main Ethiopian Rift (MER)32. However, we argue that active necking in the TRZ indicates that the rift sector is transitioning to late-stage rifting south of the Afar Triangle (Fig. 1). Although both the Turkana and Main Ethiopian Rift sectors exhibit ongoing strain localization at their axes, estimates of thick crust beneath the latter suggest magmatic underplating33. Thus, we suggest that there is a distinction in the mechanics of crustal necking along-strike of the rift system that is compensated by magmatic underplating33 in the Main Ethiopian Rift sector. While other EARS rifts remain in the stretching phase with crustal thicknesses exceeding 25 km34, the TRZ’s evolution appears to have been accelerated by its unique geological history. We propose that the TRZ highlights how inherited lithospheric structure and past tectonic events can strongly influence rift development, challenging the traditional view of rift maturation governed primarily by plate kinematics.

Previous studies12,35 have dismissed or minimized the role of rift superposition, citing a lack of evidence for CARS-related structures in the TRZ. However, contrary to these interpretations, our outcrop and subsurface data indicate the existence of CARS rifting structures in the TRZ (Fig. 4a–d, Supplementary Figs. 10 and 11). Cretaceous-Paleogene strata of the Lapur Sandstone36, interpreted as CARS-related, are exposed within the uplifted footwall of the Lapur Fault in the Lapur Range northwest of Lake Turkana (Fig. 4c). These sandstones are overlain by EARS-related Eocene–Miocene volcanic flows of the Turkana Volcanics36 (Supplementary Fig. 11). Beneath the Lapur Sandstone, outcrop exposures reveal a previously undocumented unit of clast-supported, basement-derived conglomerates and breccias (Supplementary Figs. 10 and 11). In contrast to the well-rounded quartz-pebble conglomerates of the overlying Lapur Sandstone36, this basal unit comprises angular to sub-rounded basement clasts ranging from cobbles to boulders. The coarse clast size and disorganized bedding indicate deposition in proximal alluvial fan environments, whereas the Lapur Sandstone is interpreted as representing braided stream and distal alluvial fan deposits36. This implies exhumation of the crystalline basement along steep fault-bounded relief prior to emplacement of the Eocene flood basalts. These findings provide direct evidence of Cretaceous-age fault-related topography preserved in outcrop within the TRZ.

Fig. 4: Cross-sectional restoration and extension.
Fig. 4: Cross-sectional restoration and extension.The alternative text for this image may have been generated using AI.
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a, b Interpreted east-west seismic reflection profiles (locations in c). The deepest, poorly imaged seismic package thickens westward, interpreted as the Lapur Sandstone and conglomerates. This package is overlain by a package of high-amplitude reflectors that show minimal thickness variation in dip-section, interpreted as the Turkana Volcanics. c A simplified geologic map modified from refs. 70,71 of the northern Turkana Basin shows the locations of seismic reflection profiles and the restoration cross-section. Elevation data from ref. 61. d Interpreted south-north seismic reflection profile (location in c). Dashed horizons overlying interpreted faults (solid lines) indicate that the fault cuts the horizon in strike-view. e Restoration cross-section of depth-converted seismic horizons and amount of horizontal extension accounted for by the restoration (Supplementary Methods; Supplementary Figs. 12 and 13) (location in c). Tectonostratigraphic packages shown in (c). Cross-sections are in depth relative to the mean sea level and displayed with no vertical exaggeration. f, g Lapur Fault and Shore Fault System incremental extension and time-averaged extension rates calculated from cross-section restoration in (e) (Supplementary Methods; Supplementary Tables 24).

Seismic reflection profiles across the hanging wall of the Lapur Fault image strata varying in thickness beneath a poorly reflective, high-amplitude seismic package (Fig. 4a–d, Supplementary Figs. 4 and 5). We interpret these lower strata as correlatives of the Lapur Sandstone and underlying conglomerate, overlain by interbedded volcanics and sediments of the Turkana Volcanics (Supplementary Fig. 6; Supplementary Information). A basement depth map in two-way traveltime provides further evidence of CARS-related structures and depocenters within the Turkana Basin (Fig. 2), revealing NW-SE-trending basement displacement maxima aligned with previously mapped CARS faults15,37 (Fig. 1f). These basement lows coincide with a continuous low–shear wave velocity anomaly in the upper crust, interpreted by Kounoudis et al.38 as CARS-age sediments extending from the Sudan Rifts to the Anza Graben.

Our basement isopach map and crustal profile indicate that crustal necking is most pronounced where EARS structures overlap CARS depocenters, suggesting that rift maturation is most advanced in areas of pre-existing crustal thinning and weakening (Fig. 2d). We infer that EARS rifting in the TRZ exploited a thin, weakened lithosphere shaped by earlier CARS extension and pre-Cretaceous crustal thinning across northeastern Africa19. The short interval—less than 17 million years (Myr)—between the end of CARS rifting, the onset of EARS extension, and subsequent magmatism likely precluded lithospheric healing39 west of Lake Turkana and along the present-day rift axis. While other EARS segments, such as the Shire Rift40, also exhibit rift superposition, their prolonged hiatus between Mesozoic and Neogene extension contrasts with the rapid overprinting observed in the TRZ (Fig. 1e). Interestingly, the Anza Graben experienced CARS rifting15, yet shows limited EARS-related thermal alteration38. Sparse evidence of Miocene fault reactivation is preserved in well and seismic data in the northwestern Anza Graben15 (Supplementary Fig. 2), but the absence of significant Cenozoic magmatism21,22 may explain the muted EARS imprint relative to the Turkana Basin.

The EARS-related stretching phase of the TRZ began in the Eocene17 and persisted into the Miocene, with deformation distributed across a 200-km-wide zone along our crustal profile. Significant strain was accommodated by faults such as the Lokichar Fault (Fig. 2). Integrated with earlier subsurface interpretations (i.e., ref. 15) (Supplementary Fig. 2) and outcrop investigations20 east of Lake Turkana, our results show that rift-related sedimentation extended ~350 km, from the Lotikipi and Lokichar Basins to the northwestern Anza Graben15,41,42. Subsurface mapping reveals substantial displacement of the Gombe Series along the rift axis, with basalts absent in the Lokichar Basin43 but exposed east of Lake Turkana (Figs. 2 and 3). These observations indicate that strain localized shortly after the eruption of the Gombe Series, consistent with crustal-scale models showing strain migration toward the rift axis in the early Pliocene44,45. Based on this timing and the lithospheric thinning required for magma generation23, we infer that the TRZ transitioned from stretching to necking at ~4 Ma, shortly after the Miocene–Pliocene boundary (Fig. 5).

Fig. 5: Neogene tectonics, strata, and fauna of the Turkana Rift Zone.
Fig. 5: Neogene tectonics, strata, and fauna of the Turkana Rift Zone.The alternative text for this image may have been generated using AI.
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a Temporal range of the stretching and necking phase in the Turkana Rift Zone (TRZ) and Neogene magmatic pulses from refs. 21,22,23. The proposed onset of crustal necking corresponds to a change in melts derived from decompression melting23, strain localization along the rift axis (Fig. 2c), and higher sediment accumulation rates. b Schematic diagram of crustal structure evolution in the TRZ. Black-colored faults represent active faults; Gray-colored faults represent inactive faults; Yellow-colored basins represent active deposition; Gray-colored basins represent inactive basins. c Changes in sedimentary accumulation rates as proxied by outcrop sedimentary thickness (data from ref. 18), with black arrows showing change in slope and the red dashed line and shading showing the 4.58 Ma breakpoint and 95% CI (4.81–4.35 Ma). d Temporal distribution of the primary fossil-bearing strata for East Turkana, West Turkana, and the Omo. e Changes in large mammal community species richness. f Fossil records of apes and hominins, and archeological records from the TRZ. Data in (df) are available in Supplementary Table 5 and Supplementary Data 2.

Initiation of necking increased time-averaged extension rates along the Lapur and Shore Fault System (Fig. 4f, g), which defines the TRZ’s necking fault complex. This system of large-offset, low-angle faults accommodates several kilometers of extension and crustal thinning during active necking. The Lapur Fault, which exposes the basement in its footwall, maintains a relatively low dip of ~30° throughout the crust, into which the higher-angle Shore Fault System (45–60°) detaches as the faults link in the subsurface (Supplementary Fig. 12). Mechanical thinning along this complex resembles the recently proposed model of crustal thinning in necking domains driven by high-angle normal and detachment faults4. The TRZ’s necking fault complex also shares key characteristics with breakaway fault complexes imaged in rifted margin necking domains, which are composed of low-angle, oceanward-dipping, high-offset faults that facilitate substantial extension and expand both horizontal and vertical accommodation space, thereby increasing bulk accommodation5,26,46. Numerical models suggest such structures form via crustal-scale faults rooted in shear zones that penetrate the mantle, developing as strain localizes along the rift axis5,47.

Our restored profile yields a total of 15.4 km of upper-crustal extension based on fault-heave estimates (Supplementary Information; Supplementary Figs. 12 and 13), of which 7.1 km (46%) occurred since 4 Ma (Supplementary Information). Brittle faulting accounts for ~50% of the extension required to produce the deflection of the Moho, indicating that upper-crustal faulting cannot fully explain the inferred crustal thinning. Multiple episodes of basin inversion in the TRZ19,48 may have limited the preservation of fault heaves, leading to an underestimation of extension. Alternatively, lower-crustal flow and/or regional pre-Cenozoic thinning19 related to crustal delamination may account for a significant fraction of the Moho thinning. Strain localization on the necking fault complex nearly doubled rift-axis extension rates since ~4 Ma, with higher time-averaged rates along the Shore Fault System (1.2 mm/yr) than the Lapur Fault (0.55 mm/yr) (Fig. 4g). The Shore Fault System accommodated most of this Pliocene–Recent extension. However, the Lapur Fault shows increased activity on the youngest horizon, suggesting spatiotemporal strain partitioning within the necking fault complex. The substantial extension over the past 4 Myr increased bulk accommodation and drove deposition of the TRZ’s thick Plio–Pleistocene stratigraphy.

The Plio–Pleistocene strata of the TRZ preserve thousands of well-preserved fossil hominin and archeological remains, providing an unparalleled window for reconstructing human evolution49. The bulk of this record is concentrated in the Omo Group deposits50—comprised of three sequences in the northern (Shungura Formation), western (Nachukui Formation), and eastern (Koobi Fora Formation) segments of the TRZ—that provide an exceptionally rich, temporally continuous record of fossil hominins and their environmental context from ~4 to 1 Ma (Fig. 5d–f)51. However, the TRZ fossil record prior to 4 Ma is comparatively sparse and discontinuous, often intercalated with thick volcanic units, found in a few isolated outcrops (Fig. 5d)18,20 (Supplementary Data 2). Large mammal species richness (i.e., the number of species identified) is strongly correlated with how fossiliferous sedimentary deposits are52,53 and shows a marked shift towards higher values after ~4 Ma (Fig. 5e).

We propose that key differences in the TRZ’s fossil record before and after ~4 Ma reflect changes in depocenter characteristics driven by rift-phase processes (Fig. 5). Prior to 4 Ma, during the TRZ’s stretching phase, fossil-bearing deposits were stratigraphically discontinuous and geographically isolated (Fig. 5d). This reflects a rift dominated by distributed deformation and slip on isolated faults (Fig. 5b), which produced fragmented depocenters with accommodation space controlled by incremental slip on propagating faults54. While some faults eventually linked to form larger depocenters, these remained relatively small and accumulated sediment at lower rates than those of the later Omo Group sequence (Fig. 5c). By the early Pliocene (~4 Ma), outcrop stratigraphy reveals a marked increase in accumulation rates (Fig. 5c) and a transition to sedimentation within a large, integrated basin system20. This shift—driven by fault abandonment and localization of deformation toward the rift axis—marks the TRZ’s transition from the stretching to the necking phase (Fig. 5). The temporal coincidence between this tectonic transition and the onset of continuous, thick fossil-bearing strata suggests that the necking phase provided critical conditions for fossil preservation, including elevated accumulation rates and increased, localized accommodation space. We propose that these tectonic changes played a fundamental role in shaping the TRZ’s exceptional paleoanthropological record.

Our identification of the TRZ as an actively necking rift positions it as a natural laboratory for testing geodynamic models and refining interpretations of rifted margins. We show that its decoupled evolution from other EARS segments reflects inherited crustal structure and rheology, further amplified by magmatic weakening. These conditions have accelerated rift maturation, highlighting how pre-existing lithospheric properties and magmatism influence the timing and location of breakup. These findings constrain models of rift evolution, inform plate reconstructions, and have broad implications for understanding the dynamics of continental breakup.

Necking and oceanization domains exist in abandoned rift sectors of many rifted margins that underwent successful breakup11 but are absent in most intracontinental failed rifts (Fig. 1d). This suggests that once rifts enter the necking phase, they may progress toward breakup because necking both accelerates extension and weakens the crust5,55,56. In addition to early oceanization in Afar, this study documents active necking in the TRZ, suggesting that, despite slow extension rates, two segments of the EARS’ eastern branch have reached rift phases typically linked to successful breakup. Their emergence signals that the EARS has crossed a critical threshold, initiating geodynamic feedbacks that promote progression toward breakup6,56,57. We conclude that these observations indicate the EARS is now primed for continental breakup and provides a key setting for investigating rifting and breakup dynamics in magma-rich systems.