Abstract
Autism spectrum disorder (ASD) is a complex neurodevelopmental disorder characterized by persistent deficits in social communication and repetitive behaviors. Recent studies have indicated that heterozygous mutations in the mixed lineage leukemia 5 (MLL5) gene are implicated in ASD susceptibility and associated with neurodevelopmental abnormalities. However, the detailed mechanisms remain unclear. Here, we demonstrate that Mll5 haploinsufficiency in mice impairs microglial phagocytosis, drives neuronal hyperexcitability, and recapitulates core ASD-like behaviors. We also show that Mll5 acts as an epigenetic regulator, modulating microglial phagocytosis via the TREM2-SGK3-GSK3β signaling axis, which is associated with deficient glucose metabolism. Furthermore, microglia derived from individual with ASD exhibit parallel reductions in MLL5 expression and phagocytic function. By targeting this pathway, lithium chloride, a GSK3β inhibitor, rescues both microglial phagocytosis deficits and behavioral abnormalities in Mll5 haploinsufficienct mice. Our findings highlight MLL5’s critical role in ASD and its potential as a therapeutic target.
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Data availability
Gene expression profiling data have been deposited at the GEO database (GEO: GSE280750) and are publicly available as of the date of publication. Source data are provided with this paper.
References
Lord, C. et al. Autism from 2 to 9 years of age. Arch. Gen. Psychiatry 63, 694–701 (2006).
Lord, C. et al. Autism spectrum disorder. Nat. Rev. Dis. Primers 6, 5 (2020).
Bailey, A. et al. Autism as a strongly genetic disorder: evidence from a British twin study. Psychol. Med. 25, 63–77 (1995).
Sandin, S. et al. The familial risk of autism. JAMA 311, 1770–1777 (2014).
Satterstrom, F. K. et al. Large-scale exome sequencing study implicates both developmental and functional changes in the neurobiology of autism. Cell 180, 568–584 (2020).
Zhou, X. et al. Integrating de novo and inherited variants in 42,607 autism cases identifies mutations in new moderate-risk genes. Nat. Genet. 54, 1305–1319 (2022).
Grove, J. et al. Identification of common genetic risk variants for autism spectrum disorder. Nat. Genet. 51, 431–444 (2019).
Dong, S. et al. De novo insertions and deletions of predominantly paternal origin are associated with autism spectrum disorder. Cell Rep. 9, 16–23 (2014).
Sharawat, I. K., Panda, P. K. & Dawman, L. Clinical characteristics and genotype-phenotype correlation in children with KMT2E gene-related neurodevelopmental disorders: report of two new cases and review of published literature. Neuropediatrics 52, 98–104 (2021).
Abreu, N. J. et al. Novel truncating variant in KMT2E associated with cerebellar hypoplasia and velopharyngeal dysfunction. Clin. Case Rep. 10, e05277 (2022).
O’Donnell-Luria, A. H. et al. Heterozygous variants in KMT2E cause a spectrum of neurodevelopmental disorders and epilepsy. Am. J. Hum. Genet. 104, 1210–1222 (2019).
Ali, M. et al. Molecular basis for chromatin binding and regulation of MLL5. Proc. Natl. Acad. Sci. USA 110, 11296–11301 (2013).
Lemak, A. et al. Solution NMR structure and histone binding of the PHD domain of human MLL5. PLoS ONE 8, e77020 (2013).
Tasdogan, A. et al. DNA damage-induced HSPC malfunction depends on ROS accumulation downstream of IFN-1 signaling and bid mobilization. Cell Stem Cell 19, 752–767 (2016).
Li, Y. J. et al. KMT2E haploinsufficiency manifests autism-like behaviors and amygdala neuronal development dysfunction in mice. Mol. Neurobiol. 60, 1609–1625 (2023).
Zhang, X. et al. MLL5 is involved in retinal photoreceptor maturation through facilitating CRX-mediated photoreceptor gene transactivation. iScience 25, 104058 (2022).
Heuser, M. et al. Loss of MLL5 results in pleiotropic hematopoietic defects, reduced neutrophil immune function, and extreme sensitivity to DNA demethylation. Blood 113, 1432–1443 (2009).
Zhou, P. et al. MLL5 suppresses antiviral innate immune response by facilitating STUB1-mediated RIG-I degradation. Nat. Commun. 9, 1243 (2018).
Swinnen, N. et al. Complex invasion pattern of the cerebral cortex by microglial cells during development of the mouse embryo. Glia 61, 150–163 (2013).
Ginhoux, F. et al. Fate mapping analysis reveals that adult microglia derive from primitive macrophages. Science 330, 841–845 (2010).
Paolicelli, R. C. et al. Synaptic pruning by microglia is necessary for normal brain development. Science 333, 1456–1458 (2011).
Schafer, D. P. et al. Microglia sculpt postnatal neural circuits in an activity and complement-dependent manner. Neuron 74, 691–705 (2012).
Nguyen, P. T. et al. Microglial remodeling of the extracellular matrix promotes synapse plasticity. Cell 182, 388–403 (2020).
Lukens, J. R. & Eyo, U. B. Microglia and neurodevelopmental disorders. Annu Rev. Neurosci. 45, 425–445 (2022).
Wamsley, B. et al. Molecular cascades and cell type-specific signatures in ASD revealed by single-cell genomics. Science 384, eadh2602 (2024).
He, D. et al. Disruption of the IL-33-ST2-AKT signaling axis impairs neurodevelopment by inhibiting microglial metabolic adaptation and phagocytic function. Immunity 55, 159–173 (2022).
Scortegagna, M. et al. PDK1 and SGK3 contribute to the growth of BRAF-mutant melanomas and are potential therapeutic targets. Cancer Res. 75, 1399–1412 (2015).
Liu, F., Wu, X., Jiang, X., Qian, Y. & Gao, J. Prolonged inhibition of class I PI3K promotes liver cancer stem cell expansion by augmenting SGK3/GSK-3β/β-catenin signalling. J. Exp. Clin. Cancer Res. 37, 122 (2018).
Wang, S. et al. TREM2 drives microglia response to amyloid-β via SYK-dependent and -independent pathways. Cell 185, 4153–4169 (2022).
Liu, Z. et al. TMEM59 interacts with TREM2 and modulates TREM2-dependent microglial activities. Cell Death Dis. 11, 678 (2020).
Keren-Shaul, H. et al. A unique microglia type associated with restricting development of Alzheimer’s disease. Cell 169, 1276–1290 (2017).
Wang, Y. et al. TREM2 lipid sensing sustains the microglial response in an Alzheimer’s disease model. Cell 160, 1061–1071 (2015).
Zhang, X., Novera, W., Zhang, Y. & Deng, L. W. MLL5 (KMT2E): structure, function, and clinical relevance. Cell Mol. Life Sci. 74, 2333–2344 (2017).
Xiao, H., Deng, M., Yang, B., Tang, J. & Hu, Z. Role of glycogen synthase kinase 3 in ischemia-induced blood-brain barrier disruption in aged female rats. J. Neurochem. 142, 194–203 (2017).
Hu, W. et al. Lithium cholesterol sulfate: a novel and potential drug for treating Alzheimer’s disease and autism spectrum disorder. CNS Neurol. Disord. Drug Targets 22, 1250–1258 (2023).
Szklarska, D. & Rzymski, P. Is lithium a micronutrient? From biological activity and epidemiological observation to food fortification. Biol. Trace Elem. Res. 189, 18–27 (2019).
Peça, J. et al. Shank3 mutant mice display autistic-like behaviours and striatal dysfunction. Nature 472, 437–442 (2011).
Sethna, F. et al. Enhanced expression of ADCY1 underlies aberrant neuronal signalling and behaviour in a syndromic autism model. Nat. Commun. 8, 14359 (2017).
Sun, L. et al. Visualization and correction of social abnormalities-associated neural ensembles in adult MECP2 duplication mice. Sci. Bull. 65, 1192–1202 (2020).
Thomas, A. et al. Marble burying reflects a repetitive and perseverative behavior more than novelty-induced anxiety. Psychopharmacology 204, 361–373 (2009).
Deacon, R. M. Digging and marble burying in mice: simple methods for in vivo identification of biological impacts. Nat. Protoc. 1, 122–124 (2006).
Kalueff, A. V. et al. Neurobiology of rodent self-grooming and its value for translational neuroscience. Nat. Rev. Neurosci. 17, 45–59 (2016).
Sierra, A., Paolicelli, R. C. & Kettenmann, H. Cien años de microglía: milestones in a century of microglial research. Trends Neurosci. 42, 778–792 (2019).
Pereira-Iglesias, M. et al. Microglia as hunters or gatherers of brain synapses. Nat. Neurosci. 28, 15–23 (2025).
Bollinger, J. L., Bergeon Burns, C. M. & Wellman, C. L. Differential effects of stress on microglial cell activation in male and female medial prefrontal cortex. Brain Behav. Immun. 52, 88–97 (2016).
Chen, Y. et al. miR-124/VAMP3 is a novel therapeutic target for mitigation of surgical trauma-induced microglial activation. Signal Transduct. Target. Ther. 4, 27 (2019).
Ding, X. et al. Loss of microglial SIRPα promotes synaptic pruning in preclinical models of neurodegeneration. Nat. Commun. 12, 2030 (2021).
Filipello, F. et al. The microglial innate immune receptor TREM2 is required for synapse elimination and normal brain connectivity. Immunity 48, 979–991 (2018).
Suárez-Calvet, M. et al. Early changes in CSF sTREM2 in dominantly inherited Alzheimer’s disease occur after amyloid deposition and neuronal injury. Sci. Transl. Med. 8, 369ra178 (2016).
Sun, X. D. et al. Lrp4 in astrocytes modulates glutamatergic transmission. Nat. Neurosci. 19, 1010–1018 (2016).
Banker, S. M., Gu, X., Schiller, D. & Foss-Feig, J. H. Hippocampal contributions to social and cognitive deficits in autism spectrum disorder. Trends Neurosci. 44, 793–807 (2021).
Jawaid, S. et al. Alterations in CA1 hippocampal synapses in a mouse model of fragile X syndrome. Glia 66, 789–800 (2018).
Grossman, A. W. et al. Developmental characteristics of dendritic spines in the dentate gyrus of Fmr1 knockout mice. Brain Res. 1355, 221–227 (2010).
Zhang, L. et al. Anterior piriform cortex dysfunction underlies autism spectrum disorders-related olfactory deficits in Fmr1 conditional deletion mice. Neuropsychopharmacology, https://doi.org/10.1038/s41386-024-02027-6 (2024).
Cheng, Y. et al. Degraded cortical temporal processing in the valproic acid-induced rat model of autism. Neuropharmacology 209, 109000 (2022).
Yang, E. J., Ahn, S., Lee, K., Mahmood, U. & Kim, H. S. Early behavioral abnormalities and perinatal alterations of PTEN/AKT pathway in valproic acid autism model mice. PLoS ONE 11, e0153298 (2016).
Hutsler, J. J. & Zhang, H. Increased dendritic spine densities on cortical projection neurons in autism spectrum disorders. Brain Res. 1309, 83–94 (2010).
Guo, B. et al. Anterior cingulate cortex dysfunction underlies social deficits in Shank3 mutant mice. Nat. Neurosci. 22, 1223–1234 (2019).
Sacai, H. et al. Autism spectrum disorder-like behavior caused by reduced excitatory synaptic transmission in pyramidal neurons of mouse prefrontal cortex. Nat. Commun. 11, 5140 (2020).
Weinhard, L. et al. Microglia remodel synapses by presynaptic trogocytosis and spine head filopodia induction. Nat. Commun. 9, 1228 (2018).
Yan, Y. et al. ASH1L haploinsufficiency results in autistic-like phenotypes in mice and links Eph receptor gene to autism spectrum disorder. Neuron 110, 1156–1172 (2022).
Morgan, M. A. J. et al. A cryptic tudor domain links BRWD2/PHIP to COMPASS-mediated histone H3K4 methylation. Genes Dev. 31, 2003–2014 (2017).
Suárez-Calvet, M. et al. Early increase of CSF sTREM2 in Alzheimer’s disease is associated with tau related-neurodegeneration but not with amyloid-β pathology. Mol. Neurodegener. 14, 1 (2019).
Ennerfelt, H. et al. SYK coordinates neuroprotective microglial responses in neurodegenerative disease. Cell 185, 4135–4152 (2022).
Mascaraque-Checa, M. et al. Metformin overcomes metabolic reprogramming-induced resistance of skin squamous cell carcinoma to photodynamic therapy. Mol. Metab. 60, 101496 (2022).
Ulland, T. K. & Colonna, M. TREM2—a key player in microglial biology and Alzheimer disease. Nat. Rev. Neurol. 14, 667–675 (2018).
Ulland, T. K. et al. TREM2 maintains microglial metabolic fitness in Alzheimer’s disease. Cell 170, 649–663 (2017).
Chien, T. et al. GSK3β negatively regulates TRAX, a scaffold protein implicated in mental disorders, for NHEJ-mediated DNA repair in neurons. Mol. Psychiatry 23, 2375–2390 (2018).
Ioannidis, V. et al. Disrupted extracellular matrix and cell cycle genes in autism-associated Shank3 deficiency are targeted by lithium. Mol. Psychiatry 29, 704–717 (2024).
Liu, Z. & Smith, C. B. Lithium: a promising treatment for fragile X syndrome. ACS Chem. Neurosci. 5, 477–483 (2014).
Wang, J. et al. Effects of different doses of lithium on the central nervous system in the rat valproic acid model of autism. Chem. Biol. Interact. 370, 110314 (2023).
Gideons, E. S., Lin, P. Y., Mahgoub, M., Kavalali, E. T. & Monteggia, L. M. Chronic lithium treatment elicits its antimanic effects via BDNF-TrkB dependent synaptic downscaling. Elife 6, https://doi.org/10.7554/eLife.25480 (2017).
Rajkowska, G. et al. Differential effect of lithium on cell number in the hippocampus and prefrontal cortex in adult mice: a stereological study. Bipolar Disord. 18, 41–51 (2016).
Dong, H. et al. Lithium ameliorates lipopolysaccharide-induced microglial activation via inhibition of toll-like receptor 4 expression by activating the PI3K/Akt/FoxO1 pathway. J. Neuroinflammation 11, 140 (2014).
Yu, Z. et al. Therapeutic concentration of lithium stimulates complement C3 production in dendritic cells and microglia via GSK-3 inhibition. Glia 63, 257–270 (2015).
Roh, J. D. et al. Lithium normalizes ASD-related neuronal, synaptic, and behavioral phenotypes in DYRK1A-knockin mice. Mol. Psychiatry 30, 2584–2596 (2025).
Carter, C. S. et al. Is oxytocin “nature’s medicine”? Pharmacol. Rev. 72, 829–861 (2020).
Li, R. et al. Lithium chloride promoted hematoma resolution after intracerebral hemorrhage through GSK-3β-mediated pathways-dependent microglia phagocytosis and M2-phenotype differentiation, angiogenesis and neurogenesis in a rat model. Brain Res. Bull. 152, 117–127 (2019).
Zhang, H. et al. Gsk3β regulates the resolution of liver ischemia/reperfusion injury via MerTK. JCI Insight 8, https://doi.org/10.1172/jci.insight.151819 (2023).
Waizbard, E. et al. Trajectories of autism symptom severity for boys and girls across childhood. Autism 29, 1782–1794 (2025).
Lai, M. C. & Szatmari, P. Sex and gender impacts on the behavioural presentation and recognition of autism. Curr. Opin. Psychiatry 33, 117–123 (2020).
Bobotis, B. C. et al. Sex chromosomes and sex hormones differently shape microglial properties during normal physiological conditions in the adult mouse hippocampus. J. Neuroinflammation 22, 18 (2025).
Bishnoi, I. R. & Bordt, E. A. Sex and region-specific differences in microglial morphology and function across development. Neuroglia 6, https://doi.org/10.3390/neuroglia6010002 (2025).
Dalton, G. D. et al. Transcriptome analysis identifies an ASD-Like phenotype in oligodendrocytes and microglia from C58/J amygdala that is dependent on sex and sociability. Behav. Brain Funct. 20, 14 (2024).
Bortolozzi, A. et al. New advances in the pharmacology and toxicology of lithium: a neurobiologically oriented overview. Pharmacol. Rev. 76, 323–357 (2024).
Stern, S. et al. Neurons derived from patients with bipolar disorder divide into intrinsically different sub-populations of neurons, predicting the patients’ responsiveness to lithium. Mol. Psychiatry 23, 1453–1465 (2018).
McQuade, A. et al. Development and validation of a simplified method to generate human microglia from pluripotent stem cells. Mol. Neurodegener. 13, 67 (2018).
Acknowledgements
We thank Professor Lih Wen Deng for sharing the MLL5 antibody with us, and we thank all the participating subjects. This work was funded by the National Natural Science Foundation of China (82130040 (J.S.), 82288101 (J.S.), 82171530 (J.J.L.), 81801344 (J.J.L.)), the Youth Program of National Natural Science Foundation of China (82009Y3510 (Y.B.W.)), Nursing Science Research Fund of Peking University (TYZH2023002 (J.J.L.)), and the Fundamental Research Funds for the Central Universities (71006Y2557 (J.J.L.)).
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Y.B.W. conceived and designed the experiments. S.G., Q.L., X.L., Z.F., L.H., and N.Q. performed the experiments and analyzed the data. Y.B.W. was responsible for validation. M.J., A.Z., X.X.L., H.Z., H.Z.Z., J.Z., X.D., Y.Z., L.L., J.S., J.J.L., and Y.B.W. provided resources. S.G. wrote the manuscript. Y.B.W., J.J.L, J.S., and L.L. revised the manuscript. Y.B.W., J.J.L., supervised the project.
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Gao, S., Lin, Q., Liu, X. et al. Mll5 haploinsufficiency attenuates microglial phagocytosis through dysregulated TREM2-SGK3-GSK3β signaling and recapitulates ASD-like behaviors in mice. Nat Commun (2026). https://doi.org/10.1038/s41467-026-71922-x
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DOI: https://doi.org/10.1038/s41467-026-71922-x


