Extended Data Fig. 4: Cell-type annotation for each stage. | Nature Cell Biology

Extended Data Fig. 4: Cell-type annotation for each stage.

From: Mapping the chromatin accessibility landscape of zebrafish embryogenesis at single-cell resolution by SPATAC-seq

Extended Data Fig. 4

t-distributed Stochastic Neighbor Embedding (t-SNE) visualization of the cells at 4 hpf, 5 hpf, 6 hpf, 7 hpf, 8hpf, 9 hpf, 11 hpf, 12 hpf, 14 hpf, 18 hpf, 20 hpf and 22 hpf, colored by cell type annotation. The cell types at 4 hpf to 18 hpf were defined by integrative analysis. The cell types at 20 hpf to 22 hpf were defined based on the patterns of their specifically accessible genes, which were described in previous publications or the ZFIN database6,10,24. LLP, Lateral line primordium; DN, Differentiating neurons; RPE, Retina pigmented epithelium; FP, Floor plate; Dien, Diencephalon; Telen, Telencephalon; P. arch, Pharyngeal arch; Epi, Epidermal; YSL, yolk syncytial layer; LP, Lateral plate.

Back to article page