Extended Data Fig. 5: Cell-type annotation for each stage. | Nature Cell Biology

Extended Data Fig. 5: Cell-type annotation for each stage.

From: Mapping the chromatin accessibility landscape of zebrafish embryogenesis at single-cell resolution by SPATAC-seq

Extended Data Fig. 5

t-SNE visualization of the cells at 30 hpf, 34 hpf, 38 hpf, 42 hpf, 48 hpf, and 72 hpf, colored by cell type annotation. The clusters at 48 hpf at were defined by integrative analysis. The clusters at 30 hpf, 34 hpf, 38 hpf, 42 hpf and 72 hpf were defined based on the patterns of their specifically accessible genes, which were described in previous publications or the ZFIN database6,10,24. LLP, Lateral line primordium; DN, Differentiating neurons; RPE, Retina pigmented epithelium; FP, Floor plate; Dien, Diencephalon; Telen, Telencephalon; P. arch, Pharyngeal arch; Epi, Epidermal; YSL, yolk syncytial layer; LP, Lateral plate.

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