Extended Data Fig. 6: Cell-type annotation at 24 hpf and performance comparison between SPATAC-seq and 10x Genomics.
a, t-SNE projection of cells at 24 hpf, colored by cell type annotation. LLP, Lateral line primordium; DN, Differentiating neurons; RPE, Retina pigmented epithelium; FP, Floor plate; Dien, Diencephalon; Telen, Telencephalon; P. arch, Pharyngeal arch; Epi, Epidermal; YSL, yolk syncytial layer; LP, Lateral plate. b, t-SNE projections of cells at 24 hpf (left), 48 hpf (middle), and 72 hpf (right), colored by two technologies (that is, SPATAC-seq and 10x Genomics). c, Scatter plot showing the cell ratio of each cell type profiled by SPATAC-seq and 10x Genomics at 24 hpf (left), 48 hpf (middle), and 72 hpf (right). Linear regression line and 95% confidence interval were shown (Spearman correlation analysis). Source numerical data are provided as source data.
