Extended Data Fig. 6: Comparison of HORBEC and energetic metabolism distribution.
From: Evolution and diversity of oxidoreductases involved in redox balance and energy conservation
A. Taxonomic distribution of HORBECs and markers of several metabolisms in Bacteria and Archaea. The reference phylogenies have been inferred using IQ-TREE (See Methods) and are represented as cladograms. Each triangle corresponds to a clade (phylum/class/order/family). Dots at the branches indicate ultra-fast bootstrap suppports ≥95. The rectangles correspond to the presence of HORBEC/metabolic markers in each clade. For each clade, the size of the rectangles reflects the proportion of genomes having a given HORBEC/metabolic marker. The stars indicate cases where the genes from a given HORBEC are present but scattered, meaning they could not be identified based on the gene cluster method. The characteristics of each HORBEC in terms of localization, role and reaction is indicated in the table above. For Nqr and Qmo, the electron donors and acceptors are underlined. NAD: Nicotinamide, Fdx: ferredoxin, Q: quinone, MP: Methanophenazine, HDS: heterodisulfide. B. Cooccurrence analysis between HORBEC and metabolism markers in Bacteria and Archaea. Node represent HORBEC (blue) and metabolism markers (green). Edges represent cooccurrence, with a Pearson correlation higher than 0.3 (indicated on the edge).
