Extended Data Fig. 3: Confusion matrices of predicted inflammatory condition by cell type.
From: Interpretable inflammation landscape of circulating immune cells
Normalized confusion matrices, one for each cell type (Level 1; excluding Cycling cells, Progenitors, Platelets and RBC), displaying proportion of predictions belonging to each True Condition. Diagonal values correspond to the Recall metric. XGBoost was trained on the (a) scANVI batch corrected and log-scaled cell expression profiles, and (b) original normalized and log-scaled cell expression profiles.
