Abstract
North Pacific krill (Euphausia pacifica) contain 8R-hydroxy-eicosapentaenoic acid (8R-HEPE), 8R-hydroxy-eicosatetraenoic acid (8R-HETE) and 10R-hydroxy-docosahexaenoic acid (10R-HDHA). These findings indicate that E. pacifica must possess an R type lipoxygenase, although no such enzyme has been identified in krill. We analyzed E. pacifica cDNA sequence using next generation sequencing and identified two lipoxygenase genes (PK-LOX1 and 2). PK-LOX1 and PK-LOX2 encode proteins of 691 and 686 amino acids, respectively. Recombinant PK-LOX1 was generated in Sf9 cells using a baculovirus expression system. PK-LOX1 metabolizes eicosapentaenoic acid (EPA) to 8R-HEPE, arachidonic acid (ARA) to 8R-HETE and docosahexaenoic acid (DHA) to 10R-HDHA. Moreover, PK-LOX1 had higher activity for EPA than ARA and DHA. In addition, PK-LOX1 also metabolizes 17S-HDHA to 10R,17S-dihydroxy-docosahexaenoic acid (10R,17S-DiHDHA). PK-LOX1 is a novel lipoxygenase that acts as an 8R-lipoxygenase for EPA and 10R-lipoxygenase for DHA and 17S-HDHA. Our findings show PK-LOX1 facilitates the enzymatic production of hydroxy fatty acids, which are of value to the healthcare sector.
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Introduction
Lipoxygenases (LOXs) are non-heme iron-containing dioxygenases that catalyze the dioxygenation of polyunsaturated fatty acids (PUFAs)1,2,3,4. LOXs are found in eukaryotes and can be classified based on their sequence similarity genetic and deoxygenation activity. Humans have six functional LOX genes (ALOX15, ALOX15B, ALOX12, ALOX12B, ALOXE3, ALOX5)5. These LOX enzymes have traditionally been classified by the position of the hydroperoxy and hydroxy fatty acids, formed from arachidonic acid (ARA)6. Mammalian LOXs are single polypeptide chain enzymes made up of two domains. The smaller N-terminal domain comprises several parallel and anti-parallel beta-sheets and has been implicated in the regulation of enzyme activity and membrane binding. The larger C-terminal catalytic domain consists of several helices and contains the catalytic non-heme iron localized in the putative substrate-binding pocket7,8,9,10,11,12,13,14. LOXs catalyze the formation of hydroxy FAs and their metabolites that act as major mediators5,15. Humans do not possess ALOX8, although the mouse ortholog of human ALOX15B displays arachidonic acid 8S-lipoxgenase activity16. Mouse Alox8 specifically oxidizes the eighth carbon of ARA and catalyzes the conversion of ARA to 8S-hydroxy-eicosatetraenoic acid (8S-HETE).
Euphausia pacifica (North Pacific krill) is the most common krill species found in the Northern Pacific Ocean and one of the few commercially harvested Euphausiids. We previously showed E. pacifica contains 8R-HEPE, 8R-HETE and 10R-HDHA17. We also showed that 8-HEPE could be produced enzymatically from EPA in E. pacifica17,18. These observations suggest that E. pacifica has a lipoxygenase that metabolizes EPA to 8R-HEPE, ARA to 8R-HETE and DHA to 10R-HDHA. The R-lipoxygenase is rarely found in mammal and plant species. Moreover, ALOX12B is the only R-lipoxygenase found in human5. The R forms of HETEs are metabolized by aspirin-acetylated cyclooxygenase or cytochrome P450 enzymes in mammals19,20. The genome of krill which is estimated to be about 50 Gb, has not been determined due to its huge size21,22. Therefore, to date, the LOX gene of E. pacifica had not been identified.
The DHA-derived 10,17-dihydroxy product, termed Protectin D1 (PD1), displays potent protective and anti-inflammatory actions23,24,25,26,27. Three types of 10,17-DiHDHA: 10R,17S-dihydroxy-docosa-4Z,7Z,11E,13E,15Z,19Z-hexaenoic acid, 10R,17S-dihydroxy-docosa-4Z,7Z,11E,13Z,15E,19Z-hexaenoic acid and 10S,17S-dihydroxy-docosa-4Z,7Z,11E,13Z,15E,19Z-hexaenoic acid were identified from human leukocytes and mouse exudates. 10R,17S-dihydroxy-docosa-4Z,7Z,11E,13E,15Z,19Z-hexaenoic acid is a major type in human leucocyte and defined PD128. The biosynthesis of these three 10,17-DiHDHA compounds starts from DHA, which is acted upon by ALOX15 to generate PD1 by enzymatic epoxidation. 10,17S-dihydroxy-docosa-4Z,7Z,11E,13Z,15E,19Z-hexaenoic acid is generated by double oxidation28. 10S,17S-dihydroxydocosa-4Z,7Z,11E,13Z,15E,19Z-hexaenoic acid (PDX) can be produced from DHA by soybean 15-lipoxygenase29,30. However, until now, enzymatic production of 10R,17S-dihydroxy-docosa-4Z,7Z,11E,13Z,15E,19Z-hexaenoic acid had not been established. Several differences in bio-activity between PD1 and PDX have been previously reported31,32. For example, PD1 displays higher activity for blocking neutrophil infiltration than PDX28,31. By contrast, PDX shows higher activity for inhibiting platelet aggregation than PD132,33. 10R,17S-DiHDHA produced by double dioxygenation (10R,17S-dihydroxy-docosa-4Z,7Z,11E,13Z,15E,19Z-hexaenoic acid) has equipotent activity to PD1 and PDX in terms of blocking neutrophil infiltration and inhibiting platelet aggregation, respectively31,33.
In this study, we identified LOX gene (PK-LOX1 and 2) of E. pacifica and qualitatively analyzed its gene product PK-LOX1.
Results
Identification of two lipoxygenase genes from E. pacifica
We constructed 42,432 contigs from E. pacifica RNA sequencing reads by assemble using trinity (Supplemental data S1). Total contig size was 52,804,389. N50 contig size was 1487. A search for candidate lipoxygenase genes from 42,432 contigs using blastx identified two potential hits (PK-LOX1 and PK-LOX2). PK-LOX1 encoded a protein of 691 amino acids, which included a PLAT domain and LOX domain. PK-LOX2 encoded a protein of 686 amino acids, which also included a PLAT domain and LOX domain (Fig. 1). The amino acid sequence homology between PK-LOX1 or PK-LOX2 and Alox8 was analyzed by blastp. The results are summarized in Supplemental Figure S1. A multiple sequence alignment of lipoxygenase proteins from North Pacific Krill, mouse, soybean and coral is shown in Supplemental Figure S6.
Lipoxygenase activity of PK-LOX1
Recombinant baculovirus vectors were constructed for the expression of 6xHis tagged PK-LOX1, PK-LOX2, Alox8 or AcGFP. The expression level of PK-LOX1 protein was monitored every 24 h until 6 days after baculovirus infection. LOX expression peaked 48 h after infection (Supplemental Figure S2).
Recombinant PK-LOX1 (80 kDa) was detected by Western blot analysis (Fig. 2A). By contrast, PK-LOX2 was barely detectable in Sf9 cells. We examined the level of RNA expression of PK-LOX1 and PK-LOX2. The expression of PK-LOX2 RNA was detected in Sf9 cells (Supplemental Table S1). Our analysis showed PK-LOX1 could produce 8-HETE, 8-HEPE and 10-HDHA from 40 µmol/L of ARA, EPA and DHA, respectively (Fig. 2B,C). Alox8 displayed the highest activity for 8-HETE production, whereas PK-LOX1 showed the highest activity for 8-HEPE production (Fig. 2B). The metabolic efficiency of 8-HETE, 8-HEPE or 10-HDHA production from 40 µmol/L of ARA, EPA or DHA by PK-LOX1 was 0.79%, 55.62% or 0.97%, respectively.
Protein expression and lipoxygenase activity of PK-LOX1 and PK-LOX2. (A) Western blot analysis using anti-His antibody. CBB staining was used as a loading control. (B) Amount of 8-HETE, 8-HEPE and 10-HDHA in solution after incubation of ARA, EPA or DHA with Sf9 cells infected with baculovirus harboring GFP, PK-LOX1, PK-LOX2 or Alox8 genes for 1 h. Values are the mean ± s.d. of three samples. Values marked by different letters were significantly different (p < 0.05). (C) MSMS spectra of 8-HETE, 8-HEPE and 10-HDHA produced by PK-LOX1.
HEPE produced by PK-LOX1 from EPA was detected as a single peak by LC/QTOF analysis. By contrast, HEPE produced by Alox8 from EPA could be separated into two peaks (Fig. S3A). Specifically, Alox8 generated two product peaks corresponding to 15-HEPE and 8-HEPE (Fig. S3B). The specificity of omega 13 carbon oxidization activity of Alox8 was lower for EPA and DHA compared with ARA (Fig. S3C).
PK-LOX1 catalyzes the stereospecific oxidation of EPA, DHA and ARA
We analyzed the stereochemical structure of 8-HETE, 8-HEPE and 10-HDHA metabolized by PK-LOX1 or Alox8 using a CHIRALPAK ID column. Previously, we demonstrated that a CHIRALPAK ID column could resolve a racemate of 8-HETE, 8-HEPE and 10-HDHA17. Moreover, we confirmed the second peak was the S-form of 8-HETE and 8-HEPE, using authentic standards of 8S-HETE and 8S-HEPE, respectively. We also concluded the second peak of rac-10-HDHA was the S-form, because the peak of 10-HDHA produced by Alox8 corresponded to the second peak in our previous study. Here, to establish whether the first peak of the rac-10-HDHA was 10R-HDHA, we reconfirmed the stereochemical structure of 10-HDHA from E. pacifica according to a previous report which determined the stereochemical structure of soybean LOX products using GC/MS34. The derivative of 10-HDHA from E. pacifica corresponded to the peak of (R)-dimethyl malate (Fig. S3). These results showed that 10-HDHA from E. pacifica was 10R-HDHA and the first peak of rac-10-HDHA was 10R-HDHA. The peaks of 8-HETE, 8-HEPE and 10-HDHA produced by PK-LOX1 corresponded to the first peak of the racemate standards. The peak of 8-HETE, 8-HEPE and 10-HDHA produced by Alox8 corresponded to the second peak of the racemate standards (Fig. 3). The ratio of 8R-HETE : 8S-HETE in 8-HETE produced by PK-LOX1 was 98.98 : 1.02. The ratio of 8R-HEPE : 8S-HEPE in 8-HEPE produced by PK-LOX1 was 100 : 0. The ratio of 10R-HDHA : 10S-HDHA in 10-HDHA produced by PK-LOX1 was 100 : 0. The ratio of 8R-HETE : 8S-HETE in 8-HETE produced by Alox8 was 3.51 : 96.49. The ratio of 8R-HEPE : 8S-HEPE in 8-HEPE produced by Alox8 was 1.58 : 98.42. The ratio of 10R-HDHA : 10S-HDHA in 10-HDHA produced by Alox8 was 0 : 100.
Stereochemical analysis of 8-HETE, 8-HEPE and 10-HDHA produced by PK-LOX1 or Alox8. Extracted ion chromatograms of the product ion generated from the precursor ion for 8-HETE, 8-HEPE and 10-HDHA. The product ions for 8-HETE, 8-HEPE and 10-HDHA had an m/z value of 155.071, 155.071 and 153.092, respectively. The corresponding precursor ions for 8-HETE, 8-HEPE and 10-HDHA had an m/z values of 319.2, 317.2 and 343.2, respectively.
Biochemical characterization of PK-LOX1
To characterize the enzymatic properties of PK-LOX1, we examined its conversion of EPA under various conditions. PK-LOX1 displayed activity at pH 7, whereas Alox8 gave better activity under more basic conditions (Fig. 4A). In terms of temperature, PK-LOX1 gave similar levels of lipoxygenase activity at 4 to 40 °C. By contrast, Alox8 showed the highest level of activity at 4 °C (Fig. 4B). One hour was sufficient for 8-HEPE production mediated by PK-LOX1 (Fig. 4C). PK-LOX1 showed the highest enzymatic activity using 10 nmol (400 µmol/L) of EPA. Alox8 displayed more than tenfold higher activity at 10 nmol (400 µmol/L) than 1 nmol (40 µmol/L) EPA (Fig. 4D).
Examination of the conditions for incubation of EPA with PK-LOX1. PK-LOX1 was mixed with EPA at different pH conditions (A), temperatures (B), incubation times (C) and amounts of EPA (D). Values are the mean ± s.d. of three samples. Values marked by different letters were significantly different (p < 0.05).
PK-LOX1 can oxidize omega 13 carbon of gamma-linolenic acid (GLA), stearidonic acid (SDA) and docosapentaenoic acid (DPA)
PK-LOX1 oxidizes the omega 13 carbon of ARA, EPA and DHA. In addition GLA, SDA and DPA have a double bond at the omega 13 carbon. Here, we examined whether PK-LOX1 could oxidize these unsaturated fatty acids. The structures of hydroxy-GLA (HGLA), hydroxy-SDA(HSDA) and hydroxy-DPA (HDPA) were analyzed by LC/QTOFMS. A typical product ion of 6-HGLA (m/z: 129.0557), 6-HSDA (m/z: 129.0557) and 6-HGLA (m/z: 183.1027) was observed in MSMS spectra of HGLA, HSDA and HDPA produced by PK-LOX1, respectively (Fig. 5).
Lipoxygenase activity of PK-LOX1 for GLA, SDA and DPA. Sf9 cells infected with baculovirus harboring GFP, PK-LOX1, PK-LOX2 or Alox8 were incubated with 1 nmol of GLA (A), SDA (B) or DPA (C). Values of area are the mean ± s.d. of three samples. Values marked by different letters were significantly different (p < 0.05). MSMS spectra shown alongside the structures gave accurate mass values using SCIEX OS software.
Enzymatic production of 10R,17S-DiHDHA by PK-LOX1.
We examined the enzymatic production of 10R,17S-DiHDHA from 17S-HDHA (17S-hydroxy-docosa-4Z,7Z,10Z,13Z,15E,19Z-hexaenoic acid) catalyzed by PK-LOX1. The structures of 17S-HDHA and 10R,17S-DiHDHA are shown in Fig. 6A. The DiHDHA produced by PK-LOX1 was analyzed by LC/QTOFMS using a LunaC18-2 column. The MSMS spectra of DiHDHA produced by PK-LOX1 corresponded to the MSMS spectra of 10S,17S-DiHDHA standard (Fig. 6B). We also analyzed the stereochemical structure of 10,17-DiHDHA produced from 17S-HDHA by PK-LOX1. The sample was compared to a previous study involving the organic synthesis of 10R,17S-DiHDHA28. The previous study described using a Luna C18-2 column to separate 10S,17S-dihydroxy-docosa-4Z,7Z,11E,13Z,15E,19Z-hexaenoic acid, 10R,17S-dihydroxy-docosa-4Z,7Z,11E,13Z,15E,19Z-hexaenoic acid and PD1. Here, we analyzed 10S,17S-dihydroxy-docosa-4Z,7Z,11E,13Z,15E,19Z-hexaenoic acid, PD1 and 10,17S-DiHDHA produced by PK-LOX1 on a LunaC18-2 column. These three 10,17S-DiHDHAs were resolved into three discrete peaks (Fig. 6C). We also analyzed the 11,13,15 double bound geometry of 10R,17S-DiHDHA produced by PK-LOX1 according to the method reported previously by Hansen et al.35 (Supplemental Fig. S5). These observations show that DiHDHA produced from 17S-HDHA by PK-LOX1 was 10R,17S-dihydroxy-docosa-4Z,7Z,11E,13Z,15E,19Z-hexaenoic acid. PK-LOX1 displayed more than fivefold higher activity to produce 10,17S-DiHDHA from 17S-HDHA than Alox8 (Fig. 6D).
Enzymatic production of 10R,17S-DiHDHA by PK-LOX1. (A) Structures of 17S-HDHA and 10R,17S-DiHDHA. (B) MSMS spectra of 10S,17S-DiHDHA standard and DiHDHA produced by PK-LOX1 from 17S-HDHA. (C) Chromatograph of 10S,17S-DiHDA standard, 10,17S-DiHDHA produced by PK-LOX1 and PD1 standard. (D). Amount of 10,17DiHDHA in solution after incubation of 17S-HDHA with Sf9 cells infected with baculovirus harboring GFP, PK-LOX1 or Alox8 genes at 30 °C for 1 h. Values are the mean ± s.d. of three samples. Values marked by different letters were significantly different (p < 0.05).
Discussion
In this study, we identified two novel lipoxygenase genes (PK-LOX1 and 2) from E. pacifica (Fig. 1). PK-LOX1 encodes a protein of about 80 kDa (Fig. 2A) that oxidizes the omega 13 carbon of ARA, EPA, DHA, GLA, SDA and DPA (Figs. 2, 5). The lipoxygenase activity of PK-LOX1 was higher for EPA than ARA and DHA (Fig. 2B). Stereospecific oxidization of ARA, EPA and DHA mediated by PK-LOX1 generated 8R-HETE, 8R-HEPE and 10R-HDHA (Fig. 3). Lipoxygenase activity of PK-LOX1 was observed at neutral pH and temperatures between 4 to 40 °C (Fig. 4). PK-LOX1 also oxidizes the R position of the omega 13 carbon of 17S-HDHA to produce 10R,17S-DiHDHA (Fig. 5).
PK-LOX1 is a novel lipoxygenase that acts as an 8R-lipoxygenase for EPA and 10R-lipoxygenase for DHA. Arachidonate 8-lipoxygenase has been identified from mouse (Mus musculus)16 and coral (Plexaura homomalla)36, however eicosapentaenoic 8-lipoxygenase and docosahexaenoic 10-lipoxygenase had not been identified. We compared the main differences between PK-LOX1 and Alox8. Alox8 displayed only about 12% of the carbon specific oxidation activity for ARA compared with PK-LOX1. However, Alox8 acted as an 8/15-lipoxygenase for EPA and 10/17-lipoxygenase for DHA (Fig. S3). PK-LOX1 displayed an eighth and a tenth of the carbon specific oxidation activity for EPA and DHA, respectively. Moreover, Alox8 is an S type lipoxygenase, whereas PK-LOX1 is an R type lipoxygenase (Fig. 3). S type lipoxygenases are common in mammals and plants, but R type lipoxygenases tend to be confined to marine organisms. For example, arachidonate 8R-lipoxygenase was identified from coral36, and 11R and 12R-lipoxygenase activity were found in the eggs of sea urchins37. Here, we identified 8R-lipoxygenase from North Pacific krill, which is consistent with the suggestion that R type lipoxygenases are more common in marine organisms.
In this study, we show that PK-LOX1 can generate 10R,17S-DiHDHA from 17S-HDHA (Fig. 6). The enzymatic production of 17S-HDHA and 10S,17S-DiHDHA has previously been demonstrated using soybean lipoxygenase29,30. However, this study is the first to report the enzymatic production of 10R,17S-DiHDHA. Previous work showed 10,17-DiHDHA displays an anti-inflammatory effect23,24,25,26,27, but the structure–activity relationship of this compound was not determined. The method outlined in this study for the enzymatic production of 10R,17S-DiHDHA using PK-LOX1 will facilitate investigations into the structure–activity relationship.
Although krill is a key species in marine ecosystems, there is a paucity of genome data for these organisms. Currently, the only available gene database of krill is the transcriptome analysis of Antarctic krill (Euphausia superba)22. Thus, the contig data of E. pacifica constructed in this study is a new source of gene information for krill. Nonetheless, the biological function of 8-HEPE in E. pacifica remains unclear. The lipoxygenase gene sequence from E. pacifica will be useful in studying the physiological role of 8-HEPE in krill.
In summary, we have identified two novel lipoxygenases from E. pacifica. One of these lipoxygenases mediates the enzymatic production of hydroxy fatty acids that are beneficial for human health. We believe the identification and characterization of lipoxygenases from various species will form the basis of a novel method for the stereochemical specific synthesis of oxidized fatty acids. As such, marine organisms are a potential source of novel types of lipoxygenase activity.
Material and methods
Materials
ARA, EPA, and DHA were purchased from Nacalai Tesque (Kyoto, Japan). (±)8-HEPE (comprising equal amounts of 8S-HEPE and 8R-HEPE), 8S-HEPE, (±)8-HETE, 8S-HETE, 8R-HETE, rac-10-HDHA, PD1, gamma-linoleic acid (GLA), stearidonic acid (SDA) and docosapentaenoic acid (DPA) were purchased from Cayman Chemical Company (Ann Arbor, MI, USA). The Spodoptera frugiperda (Sf9) insect cells, and pFastBac vector were purchased from Thermo Fisher Scientific (Franklin, MA, USA). The anti-6xHis antibody [HIS.H8] was purchased from Abcam Japan (Tokyo, Japan).
Determination of de novo RNA sequence
Total RNA was purified from E. pacifica using an RNeasy Lipid tissue mini kit (Qiagen, Tokyo, Japan). The library of E. pacifica for next generation sequencing was made using a TruSeq RNA library prep kit v2 (Illumina, Tokyo, Japan). RNA purification and library preparation were performed according to the manufacturers’ instructions. The library was analyzed by Miseq using a Miseq reagent kit v3 (600 cycle) (Illumina). The fastaq data was assembled by Trinity38. Contigs encoding similar amino acid sequences to human and mouse lipoxygenases were identified using blastx39. Our analysis identified two such contigs, which were named PK-LOX1 and PK-LOX2.
PK-LOX1 and PK-LOX2 cloning
Double strand cDNA was synthesized using a PrimeScript Double Strand cDNA Synthesis Kit (Takara, Shiga, Japan). PK-LOX1 was amplified by PCR using KOD plus neo (TOYOBO, Osaka, Japan) and gene specific primers (PK-LOX1: 5′-GGAATCAAATCATAATGGCGCCA-3′ and 5′-AGCTTGTTTTATACACTGATGGCA-3′, PK-LOX2: 5′-TTGGTAACGCTGGCTCAGTC-3′ and 5′-ACTGACTAAATACTTATTGCATTTGGA-3′). The PCR products were cloned into pUC19 vector using a TOPO blunt cloning kit. The PK-LOX1 and PK-LOX2 cDNA sequences were confirmed by Sanger sequencing.
Construction of baculovirus
PK-LOX1 cDNA on pUC19 vector was amplified using the forward primer (5′-TGTATTTTCAGGGCGCCATGGCGCCAATTAAGGAAAAGAA-3′) that had homologous DNA sequence to ligate to 6xHis-TEV DNA and the reverse primer (5′-AGTGAGCTCGTCGACGTAGGCTATACACTGATGGCATTTGGAA-3′) that had homologous DNA sequence to ligate to pFastBac vector. PK-LOX2 cDNA on pUC19 vector was amplified using the forward primer (5′-TGTATTTTCAGGGCGCCATGGTAGCGCTGCGCTGCTTCAA-3′) that had homologous DNA sequence to ligate to 6xHis-TEV DNA and the reverse primer (5′-AGTGAGCTCGTCGACGTAGGCTAAATACTTATTGCATTTGGAA-3′) that had homologous DNA sequence to ligate to pFastBac vector. The PK-LOX DNA sequences were cloned into pFastBac1 vector at the Stu1 restriction enzyme site together with the DNA encoded 6xHis-TEV (ATGTCGTACTACCATCACCATCACCATCACGATTACGATATCCCAACGACCGAAAACCTGTATTTTCAGGGCGCCATG) using NEBuilder (NEB, Ipswich, MA, USA). We constructed bacmid including 6xHis-TEV-PK-LOX1 or 6xHis-TEV-PK-LOX2 using the Bac-to-Bac Baculovirus Expression System (Thermo Fisher Scientific).
Cell culture and baculovirus infection
Sf9 cells were cultured with Grace's medium (Thermo Fisher Scientific) containing 10% heat-inactivated fetal bovine serum (Thermo Fisher Scientific) and antibiotic–antimycotic solution at 27 °C. We transfected 1 µg of Bacmid DNA into 8 × 105 Sf9 cells using 6 µL of Cellfectin II Reagent (Thermo Fisher Scientific). After 7 days culture, media was collected as the first passage (P1) of recombinant baculovirus stock. The titer of P1 virus stock was measured using BacPAK qPCR Titration Kit (Takara). The baculovirus stock was amplified to infect Sf9 cells with P1 virus (MOI = 1). We infected baculovirus including 6xHis-AcGFP, 6xHis-PK-LOX1, 6xHis-PK-LOX2 or 6xHis-Alox8 genes into Sf9 cells. After 2 days of culture, cells were collected and stored at − 80 °C to use for analysis of lipoxygenase activity.
Western blot analysis
The details of Western Blot analysis was described previously40. Briefly, total protein was extracted from baculovirus infected Sf9 cells using RIPA lysis buffer containing protease and phosphatase inhibitor cocktail (Thermo Fisher Scientific). The protein concentration of supernatant was determined by Bradford assay. One µg of protein was subjected to electrophoresis using a NuPAGE 4–12% Bis–Tris Protein gel (Thermo Fisher Scientific). Anti-6xHis antibody was used for His-tagged protein detection.
Enzyme reaction of lipoxygenase
For enzymatic analysis of lipoxygenase (Figs. 2, 3, 4), we infected baculovirus with 2.5 × 10^7 of Sf9 cells (MOI = 1) and cultured them for 2 days. Cells were collected, divided into 60 microtubes and stored at − 80 °C until required. The stored cell pellet was re-ssuspended in 25 µL of 200 mM Tris–HCl buffer containing 1 nmol of EPA, ARA or DHA and incubated under a variety of conditions (see later). After incubation, 75 µL of acetonitrile containing 1% (v/v) formic acid were added, vortexed and centrifuged at 20,000g for 10 min at room temperature. The supernatant was analyzed by Liquid chromatography/hybrid quadrupole time-of-flight mass spectrometry (LC/QTOFMS). The total amount (mol) of 8-HETE, 8-HEPE and 10-HDHA in the supernatant was determined and then normalized according to the total protein (µg) in the microtube. Total protein in the microtube that contained GFP, PK-LOX1, PK-LOX2 or Alox8 infected Sf9 cells was 223.2, 158.6, 126.9 or 161.5 µg, respectively. The metabolic efficiencies of ARA to 8-HETE, EPA to 8-HEPE and DHA to 10-HDHA were calculated by the amount of 8-HETE, 8-HEPE or 10-HDHA in the supernatant (nmol)/the additional amount of ARA, EPA or DHA (1 nmol).
Analysis of the lipoxygenase products
We used LC/QTOFMS (Triple TOF 5600, SCIEX) for qualitative and quantitative analyses of the lipoxygenase products. The conditions used for LC/QTOFMS were described previously17. We used the multiple reaction monitoring (MRM) method to quantify 8-HEPE (m/z of precursor ion: 317.2 and product ion: 155.071), 8-HETE (m/z of precursor ion: 319.2 and product ion: 155.071), 10-HDHA (m/z of precursor ion: 343.2 and product ion: 153.092) and 10,17S-DiHDHA (m/z of precursor ion: 359.2 and product ion: 153.0925).
LC/QTOFMS analysis using a chiral column
We previously described detailed methods of stereochemical analysis of 8-HEPE, 8-HETE and 10-HDHA17. Briefly, the enantiomers of 8-HETE, 8-HEPE and 10-HDHA were separated on a CHIRALPAK ID (4.6 mm dia. × 250 mm column; DAICEL, Osaka, Japan) with isocratic elution (formic acid solution pH 2.0/methanol, 20/80).
Stereochemical analyses of 10S, 17S-DiHDHA and 10R, 17S-DiHDHA
The previous study showed that a Luna C18-2 column could be used to separate 10R,17S-dihydroxy-docosa-4Z,7Z,11E,13Z,15E,19Z-hexaenoic acid and 10S,17S-dihydroxy-docosa-4Z,7Z,11E,13Z,15E,19Z-hexaenoic acid. We used a Luna C18-2 column (4.6 mm dia. × 150 mm column) with gradient elution (water containing 0.1%(v/v) formic acid/acetonitrile containing 0.1%(v/v) formic acid, 35/65 hold at 1 min, 35/65 to 30/70 in 10 min, 30/70 to 15/85 in 10 min, 15/85 to 0/100 4 min) at a flow rate of 0.3 mL/min. The temperature of the column was maintained at 40 °C. The compounds were identified by QTOFMS using SCIEX OS Software. We used the same MS conditions as the quantification method for chiral analysis.
Statistical analysis
Statistically significant differences between the experimental groups were identified using one-way ANOVA and Tukey’s post-hoc tests.
Data availability
The relevant data are available at Mendeley Data (https://data.mendeley.com). The dataset of de novo RNA sequencing is available at https://dx.doi.org/10.17632/f2xhbjhddj.2. The other data is available at https://dx.doi.org/10.17632/m7hptyjnvb.1.
Abbreviations
- LOX:
-
Lipoxygenase
- EPA:
-
Eicosapentaenoic acid
- DHA:
-
Docosahexaenoic acid
- ARA:
-
Arachidonic acid
- HEPE:
-
Hydroxy-eicosapentaenoic acid
- HDHA:
-
Hydroxy-docosahexaenoic acid
- HETE:
-
Hydroxy-eicosatetraenoic acid
- MeOH:
-
Methanol
- PUFA:
-
Polyunsaturated fatty acid
- LC/QTOFMS:
-
Liquid chromatography/hybrid quadrupole time-of-flight mass spectrometry
References
Ivanov, I. et al. Molecular enzymology of lipoxygenases. Arch. Biochem. Biophys. 503, 161–174 (2010).
Brash, A. R. Lipoxygenases: occurrence, functions, catalysis, and acquisition of substrate. J. Biol. Chem. 274, 23679–23682 (1999).
Noguchi, N. et al. The specificity of lipoxygenase-catalyzed lipid peroxidation and the effects of radical-scavenging antioxidants. Biol. Chem. 383, 619–626 (2002).
Schneider, C., Pratt, D. A., Porter, N. A. & Brash, A. R. Control of oxygenation in lipoxygenase and cyclooxygenase catalysis. Chem. Biol. 14, 473–488 (2007).
Kuhn, H., Banthiya, S. & van Leyen, K. Mammalian lipoxygenases and their biological relevance. Biochim. Biophys. Acta 1851, 308–330 (2015).
Yamamoto, S. Mammalian lipoxygenases: molecular structures and functions. Biochim. Biophys. Acta Lipids Lipid Metab. 1128, 117–131 (1992).
Boyington, J., Gaffney, B. & Amzel, L. The three-dimensional structure of an arachidonic acid 15-lipoxygenase. Science 260, 1482–1486 (1993).
Gilbert, N. C. et al. The structure of human 5-lipoxygenase. Science 331, 217–219 (2011).
Choi, J., Jae, K. C., Kim, S. & Shin, W. Conformational flexibility in mammalian 15S-lipoxygenase: reinterpretation of the crystallographic data. Proteins Struct. Funct. Genet. 70, 1023–1032 (2008).
Chahinian, H., Sias, B. & Carrière, F. The C-terminal domain of pancreatic lipase: functional and structural analogies with C2 domains. Curr. Protein Pept. Sci. 1, 91–103 (2005).
May, C., Höhne, M., Gnau, P., Schwennesen, K. & Kindl, H. The N-terminal β-barrel structure of lipid body lipoxygenase mediates its binding to liposomes and lipid bodies. Eur. J. Biochem. 267, 1100–1109 (2000).
Tatulian, S. A., Steczko, J. & Minor, W. Uncovering a calcium-regulated membrane-binding mechanism for soybean lipoxygenase-1. Biochemistry 37, 15481–15490 (1998).
Walther, M., Hofheinz, K., Vogel, R., Roffeis, J. & Kühn, H. The N-terminal β-barrel domain of mammalian lipoxygenases including mouse 5-lipoxygenase is not essential for catalytic activity and membrane binding but exhibits regulatory functions. Arch. Biochem. Biophys. 516, 1–9 (2011).
Walther, M., Anton, M., Wiedmann, M., Fletterick, R. & Kuhn, H. The N-terminal domain of the reticulocyte-type 15-lipoxygenase is not essential for enzymatic activity but contains determinants for membrane binding. J. Biol. Chem. 277, 27360–27366 (2002).
Gabbs, M., Leng, S., Devassy, J. G., Monirujjaman, M. & Aukema, H. M. Advances in our understanding of oxylipins derived from dietary PUFAs. Adv. Nutr. 6, 513–540 (2015).
Jisaka, M., Kim, R. B., Boeglin, W. E., Nanney, L. B. & Brash, A. R. Molecular cloning and functional expression of a phorbol ester-inducible 8S-lipoxygenase from mouse skin. J. Biol. Chem. 272, 24410–24416 (1997).
Yamada, H., Kumagai, K., Uemura, A. & Yuki, S. Euphausia pacifica as a source of 8(R)-hydroxy-eicosapentaenoic acid (8R-HEPE), 8(R)-hydroxy-eicosatetraenoic acid (8R-HETE) and 10(R)-hydroxy-docosahexaenoic acid (10R-HDHA). Biosci. Biotechnol. Biochem. 84, 455–462 (2020).
Yamada, H. et al. Lipids, fatty acids and hydroxy-fatty acids of Euphausia pacifica. Sci. Rep. 7, 1–10 (2017).
Clària, J. & Serhan, C. N. Aspirin triggers previously undescribed bioactive eicosanoids by human endothelial cell-leukocyte interactions. Proc. Natl. Acad. Sci. U. S. A. 92, 9475–9479 (1995).
Clària, J., Lee, M. H. & Serhan, C. N. Aspirin-triggered lipoxins (15-epi-LX) are generated by the human lung adenocarcinoma cell line (A549)-neutrophil interactions and are potent inhibitors of cell proliferation. Mol. Med. 2, 583–596 (1996).
Jeffery, N. W. The first genome size estimates for six species of krill (Malacostraca, Euphausiidae): large genomes at the north and south poles. Polar Biol. 35, 959–962 (2012).
Sales, G. et al. KrillDB: A de novo transcriptome database for the Antarctic krill (Euphausia superba). PLoS ONE 12, 1–12 (2017).
Serhan, C. N. et al. Resolvins: a family of bioactive products of omega-3 fatty acid transformation circuits initiated by aspirin treatment that counter proinflammation signals. J. Exp. Med. 196, 1025–1037 (2002).
Levy, B. D., Clish, C. B., Schmidt, B., Gronert, K. & Serhan, C. N. Lipid mediator class switching during acute inflammation: signals in resolution. Nat. Immunol. 2, 612–619 (2001).
Hong, S., Gronert, K., Devchand, P. R., Moussignac, R. L. & Serhan, C. N. Novel docosatrienes and 17S-resolvins generated from docosahexaenoic acid in murine brain, human blood, and glial cells: autacoids in anti-inflammation. J. Biol. Chem. 278, 14677–14687 (2003).
Marcheselli, V. L. et al. Novel docosanoids inhibit brain ischemia-reperfusion-mediated leukocyte infiltration and pro-inflammatory gene expression. J. Biol. Chem. 278, 43807–43817 (2003).
Mukherjee, P. K., Marcheselli, V. L., Serhan, C. N. & Bazan, N. G. Neuroprotectin D1: a docosahexaenoic acid-derived docosatriene protects human retinal pigment epithelial cells from oxidative stress. Proc. Natl. Acad. Sci. U. S. A. 101, 8491–8496 (2004).
Serhan, C. N. et al. Anti-inflammatory actions of neuroprotectin D1/protectin D1 and its natural stereoisomers: assignments of dihydroxy-containing docosatrienes. J. Immunol. 176, 3842–3843 (2006).
Dobson, E. P., Barrow, C. J., Kralovec, J. A. & Adcock, J. L. Controlled formation of mono- and dihydroxy-resolvins from EPA and DHA using soybean 15-lipoxygenase. J. Lipid Res. 54, 1439–1447 (2013).
Chen, P. et al. Full characterization of PDX, a neuroprotectin/protectin D1 isomer, which inhibits blood platelet aggregation. FEBS Lett. 583, 3478–3484 (2009).
Serhan, C. N., Dalli, J., Colas, R. A., Winkler, J. W. & Chiang, N. Protectins and maresins: New pro-resolving families of mediators in acute inflammation and resolution bioactive metabolome. Biochim. Biophys. Acta Mol. Cell Biol. Lipids 1851, 397–413 (2015).
Guichardant, M., Véricel, E. & Lagarde, M. Biological relevance of double lipoxygenase products of polyunsaturated fatty acids, especially within blood vessels and brain. Biochimie 159, 55–58 (2019).
Chen, P., Vãricel, E., Lagarde, M. & Guichardant, M. Poxytrins, a class of oxygenated products from polyunsaturated fatty acids, potently inhibit blood platelet aggregation. FASEB J. 25, 382–388 (2011).
Hamberg, M. Steric analysis of hydroperoxides formed by lipoxygenase oxygenation of linoleic acid. Anal. Biochem. 43, 515–526 (1971).
Hansen, T. V., Dalli, J. & Serhan, C. N. Selective identification of specialized pro-resolving lipid mediators from their biosynthetic double di-oxygenation isomers. RSC Adv. 6, 28820–28829 (2016).
Brash, A. R., Boeglin, W. E., Chang, M. S. & Shieh, B. H. Purification and molecular cloning of an 8R-lipoxygenase from the coral Plexaura homomalla reveal the related primary structures of R- and S- lipoxygenases. J. Biol. Chem. 271, 20949–20957 (1996).
Hawkins, D. J. & Brash, A. R. Eggs of the sea urchin, Strongylocentrotus purpuratus, contain a prominent (11R) and (12R) lipoxygenase activity. J. Biol. Chem. 262, 7629–7634 (1987).
Grabherr, M. G. et al. Trinity: reconstructing a full-length transcriptome without a genome from RNA-Seq data. Nat. Biotechnol. 29, 644–652 (2013).
Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J. Basic local alignment search tool. J. Mol. Biol. 215, 403–410 (1990).
Yamada, H., Hakozaki, M., Uemura, A. & Yamashita, T. Effect of fatty acids on melanogenesis and tumor cell growth in melanoma cells. J. Lipid Res. 60, 1491–1502 (2019).
Acknowledgements
The authors thank Dr. Matsumura (Shinsyu University) for his technical assistance. This work was supported by funds from the Basic Biotechnology Project of Iwate Prefecture, Japan and Adaptable and Seamless Technology transfer Program through Target-driven R&D (A-STEP) from Japan Science and Technology Agency (grant number is JPMJTM19AE).
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S.Y., A.Y., N.B., Y.M. and H.Y. designed the research; S.Y., A.U., M.H., M.A., N.B. and H.Y. conducted the research; S.Y. and H.Y. analyzed the data; S.Y., N.B. and H.Y. wrote the manuscript. H.Y. had primary responsibility for the final content. All authors read and approved the final manuscript.
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Yuki, S., Uemura, A., Hakozaki, M. et al. Identification of a novel enzyme from E. pacifica that acts as an eicosapentaenoic 8R-LOX and docosahexaenoic 10R-LOX. Sci Rep 10, 20592 (2020). https://doi.org/10.1038/s41598-020-77386-3
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DOI: https://doi.org/10.1038/s41598-020-77386-3








