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Antimicrobial-resistance in clinically harmful bacteria contaminating household drinking water in Eastern Uganda highlights urgent need for enhanced antibiotic resistance stewardship
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  • Published: 13 April 2026

Antimicrobial-resistance in clinically harmful bacteria contaminating household drinking water in Eastern Uganda highlights urgent need for enhanced antibiotic resistance stewardship

  • Abdul Walusansa1,2,
  • Abdikarim Salad Elmi4,
  • Jamilu E. Ssenku2,
  • Nulu Nansikombi5,
  • Ali Kudamba2,3,
  • Alemu Shaban Okurut2,
  • Abukar Mukhtar Omar4,
  • Sumin Lunkuse6 &
  • …
  • Hussein M. Kafeero1 

Scientific Reports , Article number:  (2026) Cite this article

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We are providing an unedited version of this manuscript to give early access to its findings. Before final publication, the manuscript will undergo further editing. Please note there may be errors present which affect the content, and all legal disclaimers apply.

Subjects

  • Diseases
  • Health care
  • Microbiology

Abstract

Antimicrobial resistance (AMR) is escalating especially in waterborne bacteria, feared to cause over ten-million annual global deaths by 2050. In Eastern Uganda, bacterial contamination of household drinking water containers and sources such as boreholes is increasingly reported, but data on related AMR and contamination enables are scarce, complicating redress. On 260 random water samples, conventional culture and Kirby-Bauer disk diffusion assays were applied at Makerere University. Pre-validated semi structured questionnaires aided studying the contamination enablers. Thematic synthesis, descriptive and inferential statistics (p < 0.05), were used to analyze data, with STATA version-15. Bacterial (167 isolates), representing eleven species were obtained from 41.2% of samples (mainly from jerricans), mostly Escherichia coli (N = 47, 28.1%), and Klebsiella spp (N = 34, 20.4%). Over 59 (49.2%) of isolates were resistant to at least one high-powered drug; 34% were multi-drug resistant. E. coli showed highest resistance to Cefoxitin (48%), K. pneumoniae to Ceftazidime (28%), and Salmonella spp to Nalidixic acid (70%). Contamination enablers emerged in seven themes, the largest being type of water source (N = 11), and sociodemographic (N = 7). Hence, this water is largely unsafe, and some of these bacteria are associated with persistent epidemics, including typhoid fever in Eastern Uganda, warranting concerted efforts to avert the burden.

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Data availability

All data generated and analyzed during this study are included in the article.

Abbreviations

NWSC:

National Water and Sewerage Cooperation

RHRW:

Roof-Harvested Rain Water (RHRW)

SSA:

Sub-Saharan Africa

UBOS:

Uganda Bureau of Statistics

UTI:

Urinary Tract Infection

VHTs:

Village Health Teams

WASH:

Water Sanitation and Hygiene

WHO:

World Health Organization

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Acknowledgements

We wish to thank the office of the Resident City Commissioner (RCC) of Mbale City, which authorized conducting of this study. We also thank the Village Health Teams and Village Local Council leaders who supported the research team during field data collection. We gladly acknowledge the assistance of Emmanuel Tumwebaze of Makerere University in conducting the laboratory experiments.

Funding

This study did not receive a financial grant.

Author information

Authors and Affiliations

  1. Department of Medical Microbiology and Immunology, Faculty of Health Sciences, Habib Medical School, Islamic University in Uganda, Kampala, Uganda

    Abdul Walusansa & Hussein M. Kafeero

  2. Department of Biological Sciences, Faculty of Science, Islamic University in Uganda, Mbale, Uganda

    Abdul Walusansa, Jamilu E. Ssenku, Ali Kudamba & Alemu Shaban Okurut

  3. Department of Physiology, Faculty of Health Sciences, Habib Medical School, Islamic University in Uganda, Kampala, Uganda

    Ali Kudamba

  4. Faculty of Education, Department of Biological Science, SIMAD University, Mogadishu, Somalia

    Abdikarim Salad Elmi & Abukar Mukhtar Omar

  5. Department of Food Science and Postharvest Technology, Faculty of Agriculture and Environment, Gulu University, Gulu, Uganda

    Nulu Nansikombi

  6. Department of Computer Science, Faculty of Science, Islamic University in Uganda, Mbale, Uganda

    Sumin Lunkuse

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  1. Abdul Walusansa
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  2. Abdikarim Salad Elmi
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Contributions

AW and ASE conceived the research idea, and were involved in field data collection and manuscript writing. Then JES, NN, AK, ASO, AMO, and SL were involved in data collection, data analysis and manuscript writing. HMK was the overall supervisor and administrator, and was involved in manuscript writing. All the authors proofread and approved the final draft of the manuscript.

Corresponding author

Correspondence to Abdul Walusansa.

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Competing interests

The authors declare no competing interests.

Ethical approval

This research was conducted in conformity to the national guidelines for the conduct of research in the post COVID-19 pandemic era, set by Uganda National Council for Science and Technology93. The study sought ethical approval from the Research Ethics Committee of Islamic University in Uganda (Ref. IUIUREC-2024-69). Written informed consent to participate in this study was obtained in writing from the study participants. The chairpersons of the Village Local Councils, and the Mbale District Health Officer (DHO) granted their approval for community entry and research conduct.

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Consent to publish the findings of this study was obtained in writing from the study participants.

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Walusansa, A., Elmi, A.S., Ssenku, J.E. et al. Antimicrobial-resistance in clinically harmful bacteria contaminating household drinking water in Eastern Uganda highlights urgent need for enhanced antibiotic resistance stewardship. Sci Rep (2026). https://doi.org/10.1038/s41598-026-47699-w

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  • Received: 21 January 2026

  • Accepted: 02 April 2026

  • Published: 13 April 2026

  • DOI: https://doi.org/10.1038/s41598-026-47699-w

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Keywords

  • Water
  • Contamination
  • Diarrheal bacteria
  • Antibiotic resistance
  • Mbale city
  • Eastern Uganda
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