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Deep learning-based tooth axis estimation from 3D tooth crowns using quaternion representation and multi-loss optimization
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  • Published: 19 May 2026

Deep learning-based tooth axis estimation from 3D tooth crowns using quaternion representation and multi-loss optimization

  • Geunhye Kim1,
  • Sena Lee1,
  • Junghun Han1,
  • Eun-Hack Andrew Choi3,
  • Yongkyu Jin2,
  • Chooryung Judi Chung3 &
  • …
  • Sejung Yang1,4 

Scientific Reports (2026) Cite this article

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Subjects

  • Computational biology and bioinformatics
  • Health care
  • Mathematics and computing
  • Medical research

Abstract

Tooth axis estimation plays a key role in various digital dental workflows, including orthodontic diagnosis and prosthetic design. In clinical practice, tooth axes are typically determined by jointly considering crown morphology and radiographic information; however, this process is subjective and time-consuming. In particular, anatomical tooth axes are defined based on root information, and cone-beam computed tomography is commonly used for this purpose. However, its routine use is limited by radiation exposure, cost, and workflow complexity. As an alternative, crown-based references such as the facial axis of the clinical crown have been used as auxiliary indicators of tooth orientation in clinical settings. In this study, we propose a deep learning–based framework for automatically estimating crown-based tooth axes using only geometric information from 3D tooth crown point clouds. The proposed method first translates each tooth to its center and applies absolute orientation alignment to normalize all samples into a common coordinate system. Rotation-based data augmentation is then applied to incorporate diverse pose variations. During inference, medial–distal orientation alignment is performed to ensure consistent directional alignment of each tooth. A quaternion-based rotation regression model is used to estimate the tooth axis by rotating a predefined initial axis, and a composite loss function is employed to jointly enforce numerical, geometric, and directional consistency. Experimental results on a controlled patient-level split show that the proposed method achieves an average angular error of 3.23\(^{\circ }\) (standard deviation: 2.06\(^{\circ }\)), along with relatively consistent Chamfer distance measures. In addition, qualitative analysis indicates that the predicted tooth axes exhibit relatively consistent directional patterns at the full-arch level. These findings suggest that crown surface geometry, combined with alignment-based preprocessing, may be useful for approximating crown-based tooth axes. Rather than replacing anatomical tooth axes, the proposed framework aims to explore the feasibility of estimating clinically meaningful reference axes under limited information settings, and may serve as a supportive geometric reference for crown-based digital dentistry workflows.

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Acknowledgements

Not applicable.

Funding

This work was supported by the Bio & Medical Technology Development Program of the National Research Foundation of Korea (NRF), funded by the Korean government (MSIT) (Grant No. RS-2024-00440802); by Align Technology, Inc., and by the National Research Foundation of Korea (NRF) grant funded by the Korean government’s Ministry of Science and ICT (MSIT) (Grant No. RS-2024-00350077); and by the Basic Science Research Program through the National Research Foundation of Korea (NRF), funded by the Ministry of Education (Grant No. RS-2024-00415532).

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Authors and Affiliations

  1. Department of Precision Medicine, Yonsei University Wonju College of Medicine, Wonju, 26426, Republic of Korea

    Geunhye Kim, Sena Lee, Junghun Han & Sejung Yang

  2. Diorco Inc., Yongin, 17095, Republic of Korea

    Yongkyu Jin

  3. Department of Orthodontics, Gangnam Severance Hospital, The Institute of Craniofacial Deformity, Yonsei University College of Dentistry, Seoul, 06273, Republic of Korea

    Eun-Hack Andrew Choi & Chooryung Judi Chung

  4. Department of Medical Informatics and Biostatistics, Yonsei University Wonju College of Medicine, Wonju, 26426, Republic of Korea

    Sejung Yang

Authors
  1. Geunhye Kim
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  2. Sena Lee
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  3. Junghun Han
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  4. Eun-Hack Andrew Choi
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  5. Yongkyu Jin
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  6. Chooryung Judi Chung
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  7. Sejung Yang
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Corresponding authors

Correspondence to Chooryung Judi Chung or Sejung Yang.

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Cite this article

Kim, G., Lee, S., Han, J. et al. Deep learning-based tooth axis estimation from 3D tooth crowns using quaternion representation and multi-loss optimization. Sci Rep (2026). https://doi.org/10.1038/s41598-026-53154-7

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  • Received: 25 February 2026

  • Accepted: 11 May 2026

  • Published: 19 May 2026

  • DOI: https://doi.org/10.1038/s41598-026-53154-7

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