Introduction

Atherosclerosis is the chronic build-up of plaque in the intima or the innermost layer of the arteries. Worldwide death due to atherosclerosis and its associated complications, including myocardial infarction (MI), stroke, and ruptured aneurysms, has surpassed that of every major disease, including cancer, infection, and trauma1.

In the early stages of atherosclerosis, low-density lipoproteins (LDLs) in the plasma cross the endothelial barrier and enter the intima, where they become oxidized2. Oxidized LDL (oxLDL) is a potent chemoattractant that recruits circulating monocytes to the intima and promotes their differentiation to macrophages (MΦ). MΦ in the atherosclerotic intima avidly take up oxLDL through scavenger receptor-A, cluster of differentiation 36 (CD36), and lectin-like oxLDL receptor (LOX)-13,4, transform themselves into foam cells (FCs), proliferate5,6, and release a number of pro-inflammatory cytokines and chemokines7.

The slow progressive inflammatory process of atherosclerosis that continues for years could one day turn into a sudden, catastrophic, and potentially lethal condition in the coronary arteries (i.e., MI). During MI, the atherosclerotic plaque ruptures, leading to platelet activation, thrombotic occlusion of the coronary artery, and irreversible ischemic damage to the heart. A current consensus is that MΦ destabilize the plaques by producing metalloproteases and weakening the plaque surface and that vascular smooth muscle cells (VSMCs) stabilize the plaque by producing collagens and other extracellular matrices in the atherosclerotic intima8.

Fortilin, also known as translationally controlled tumor protein and histamine-releasing factor, is a ubiquitously expressed, highly conserved, 172-amino acid, 20-kDa protein that is present in normal cells in the nucleus9, cytosol9, and extracellular space10. Although it was originally cloned in 1988 by Gross et al. as a molecule abundantly expressed in tumor cells11, the function of fortilin remained unknown until 2001 when we and others reported that fortilin blocks apoptosis9,12,13,14,15,16,17. In addition to negatively regulating apoptosis, fortilin modulates a wide range of cellular functions and is implicated in cell cycle progression18, immunoglobulin (Ig)-E-mediated histamine release and allergic reactions19,20, reactive oxygen species handling21, modulation of endoplasmic reticulum stress pathways22, and protein homeostasis (proteostasis)21,23,24.

The role of fortilin in atherosclerosis remained unknown until recently when we generated a mouse strain that constitutionally lacks fortilin (fortilin+/-) using homologous-recombination-based gene targeting strategies25. Although we could not use fortilin-/- mice because they are embryonically lethal25,26, we placed fortilin+/- and wild-type control (fortilin+/+) mice on the Ldlr–/–Apobec1–/– hypercholesterolemic (HC) genetic background (fortilin+/–&HC and fortilin+/+&HC, respectively)27, incubated them for 10 months on a normal chow diet, and assessed the degree and extent of atherosclerosis in the aortae. We found that fortilin+/–&HC mice exhibited significantly less atherosclerosis in their aortae than did fortilin+/+&HC mice28. Because fortilin+/-&HC mice had decreased fortilin expression in all organs, tissues, and blood, however, we did not know the cell type in which the lack of fortilin mediated the amelioration of atherosclerosis.

Because the atherosclerotic lesions of fortilin+/–&HC mice contained significantly fewer MΦ than those of fortilin+/+&HC mice28 and because fortilin protects MΦ against apoptosis at least partly through Myeloid Cell Leukemia-1 (MCL-1)23,29, we hypothesized that fortilin in MΦ (fortilin) facilitates atherosclerogenesis. Using a mouse strain lacking fortilin and on the HC genetic background, we herein show that fortilin facilitates atherosclerosis. Strikingly, fortilin not only protects MФ against apoptosis but also promotes their proliferation and transformation into FCs, while preventing their transdifferentiation into VSMCs and inhibiting the differentiation of mesenchymal stem cells (MSCs) into VSMCs in a transforming growth factor beta 1 (TGF-β1)-dependent fashion, where fortilin suppresses the secretion of the anti-atherosclerotic cytokine TGF-β1 from MΦ. In contrast, the lack of fortilin induces MΦ apoptosis in high oxLDL environments, decelerates MΦ proliferation and lipid uptake, increases TGF-β1 secretion, transdifferentiates MΦ themselves to VSMCs, and differentiates MSCs to VSMCs, together mitigating atherosclerosis.

Fortilin is directionally pro-atherosclerotic through its diverse biological activities. Based on our results, we propose that fortilin is a key molecule in MΦ that drives HC-induced atherosclerogenesis.

Results

A new mouse strain lacking fortilin in MΦ was generated and placed on the HC genetic background

To test if fortilin facilitates atherosclerosis, we first used the standard homologous recombination technique30 to generate fortilinflox/flox mice in which the fortilin gene was flanked by the LoxP sequence to allow for tissue-specific deletion (Fig. 1a-1). This technique is described in detail in the “Materials and Methods” section of the manuscript.

Fig. 1: Generation and characterization of a mouse strain that lacks fortilin in macrophages (MФ, fortilinKO-MФ).
figure 1

LysM myeloid specific promoter, MФ macrophages, fortilinWT-MΦ, LysM-Cre–/–fortilinfl/fl; fortilinKO-MΦ, LysM-Cre+/–fortilinfl/fl, A.U. arbitrary unit, IB immunoblot, GAPDH glceraldehyde-3-phosphate dehydrogenase, α-GAPDH anti-GAPDH antibody, α-fortilin, anti-fortilin antibody, WT fortilinWT-MФ, KO fortilinKO-MФ, M.S. median survival, HC hypercholesterolemic, NC normal chow, LDL-C low density lipoprotein cholesterol, HDL-C high density lipoprotein cholesterol, VLDL-C very low density lipoprotein cholesterol. a Schematic diagram of the strategy of generating fortilinWT-MФ and fortilinKO-MФ mice. We first generated fortilinflox/flox mice in which the fortilin gene was flanked by the LoxP sequence to allow tissue-specific deletion using the standard homologous recombination technique (a-1). These mice were then crossed with C57BL/6 J mice overexpressing the Cre transgene under the control of the LysM enhancer/promoter (a-2a) to generate LysM-Cre+/–fortilinflox/flox mice (fortilinKO-MΦ mice), which is a mouse strain lacking fortilin in MΦ and other myeloid-lineage cells (a-3a) but not in other tissues (a-3b). Control mice (LysM-Cre–/–fortilinflox/flox mice or fortilinWT-MΦ mice) were generated by crossing fortilinflox/flox mice with C57BL/6 J mice lacking the Cre gene (a-2b). b RT-qPCR quantification of fortilin mRNA of peritoneal MФ from fortilinWT-MФ and fortilinKO-MФ mice. c Western blot analyses of tissues samples from fortilinWT-MФ and fortilinKO-MФ mice. d Survival analysis of fortilinWT-MФ and fortilinKO-MФ mice. e Placement of fortilinKO-MФ and fortilinWT-MФ on the HC genetic background. f Identification of fortilinWT-MФ-HC (lanes 1–3) and fortilinKO-MФ-HC (lanes 4–7) mice by PCR-based genotyping. Lane 8 shows the PCR results for DNA from LysM-Cre–/–fortilinflox/floxLdlr+/+Apobec1+/+ mouse. g Body weight of fortilinWT-MФ-HC and fortilinKO-MФ-HC mice at the time of sacrifice (10-months of age). h–l Lipid profile of fortilinWT-MФ-HC and fortilinKO-MФ-HC mice at the time of sacrifice. Data are mean ± s.d., P values determined by two-sided Student’s t test (b, g–l) are shown. The findings in (c) were confirmed in two independent experiments.

We crossed these mice (Fig. 1a-1) with C57BL/6 J mice overexpressing the Cre transgene under the control of the LysM enhancer/promoter (Fig. 1a-2a) to generate LysM-Cre+/–fortilinflox/flox mice (hereafter called fortilinKO-MΦ mice), which is a mouse strain lacking fortilin in MΦ and other myeloid lineage cells (Fig. 1a-3a) but not in other cell types (Fig. 1a-3b). Their control was LysM-Cre-/-fortilinflox/flox mice (hereafter called fortilinWT-MΦ mice) (Fig. 1a-2b). The peritoneal MΦ of the fortilinKO-MΦ mice (MΦKO-fortilin) expressed barely detectable levels of fortilin, as determined by real-time quantitative reverse transcription polymerase chain reaction (RT-qPCR) (Fig. 1b) and western blot analysis (Fig. 1c, fortilinKO-MΦ, arrow), whereas fortilin expression was similar in other organs between fortilinKO-MΦ and fortilinWT-MΦ mice (Fig. 1c). FortilinKO-MΦ mice appeared normal and fertile. There was no difference in survival between fortilinKO-MΦ and fortilinWT-MΦ mice, with median survival of 104.0 and 96.0 weeks, respectively (P = 0.24, Log-rank Mantel-Cox test, N = 24 and 28) (Fig. 1d). There was no difference in weight between fortilinKO-MΦ and fortilinWT-MΦ mice from ages 8 to 136 weeks when placed on the normal chow diet (Fig. S1a). We then placed both fortilinKO-MΦ and fortilinWT-MΦ mice on the HC genetic background by crossing them with Ldlr–/–Apobec1–/– mice27,28,31 (hereafter called fortilinKO-MΦ-HC (or simply KO) and fortilinWT-MΦ-HC (or simply WT) mice, respectively) (Fig. 1e, f).

FortilinKO-MΦ-HC mice developed significantly less atherosclerosis than did fortilinWT-MΦ-HC mice

We fed these mice a normal chow diet for 10 months and then subjected the entire aortae to en face and cross-sectional atherosclerosis assays. At the time of sacrifice, fortilinKO-MΦ-HC mice were numerically mildly but statistically significantly heavier by 9.1% than fortilinWT-MΦ-HC mice (Fig. 1g), although both strains had similar lipid profiles, including serum cholesterol levels (Fig. 1h–l; Fig. S1b–d). Fortilin is important for cell survival at the cellular level9, but the circulating blood of fortilinKO-MΦ-HC and fortilinWT-MΦ-HC mice did not differ in total white blood cell, monocyte, eosinophil, and basophil counts, although neutrophil and lymphocyte counts were modestly but significantly lower in fortilinKO-MΦ-HC mice compared to fortilinWT-MΦ-HC mice (Fig. S1e). Red blood cell and platelet counts did not vary significantly between fortilinKO-MΦ-HC and fortilinWT-MΦ-HC mice (Fig. S1f, g).

Strikingly, in this experimental system, the aortae of fortilinKO-MΦ-HC mice exhibited 51.7% (Fig. 2a) and 33.0% (Fig. 2b) less atherosclerosis than those of fortilinWT-MΦ-HC mice as determined by en face and cross-sectional assays, respectively (fortilinWT-MΦ-HC vs. fortilinKO-MΦ-HC mice = 12.13 ± 3.67 vs. 6.01 ± 3.44%, 50.5% reduction by the en face assay, P < 0.0001, n = 17 each; 0.162 ± 0.056 vs. 0.109 ± 0.031, 32.7% reduction by the cross-sectional assay, P < 0.026, n = 8 each; both by Student’s t test).

Fig. 2: Lack of fortilin in MФ ameliorates atherosclerosis.
figure 2

TNF-α tumor necrosis factor-α, IFN-ϒ interferon-ϒ, IL-23 interleukin 23, TGF-β1 transforming growth factor β1, TGF-β2 transforming growth factor β2. a En face atherosclerosis assay showing significantly less atherosclerosis in fortilinKO-MΦ-HC mice than in fortilinWT-MΦ-HC mice. b Cross-sectional atherosclerosis assay showing significantly less atherosclerosis in fortilinKO-MΦ-HC mice than in fortilinWT-MΦ-HC mice. Quantitative multiplex cytokine assays of (c) TNF-α, (d) IFN-ϒ, (e) IL-23, (f) TGFβ-1, and (g) TGF-β2. The scale bar in (b) equals 100 µm. Data are expressed as mean ± s.d., P values were determined by either two-sided Student’s t test (a, b, f, g) or two-tailed Mann–Whitney test (c, d, e).

Subsequently, we performed a quantitative multiplex analysis of the sera of these animals (N = 5–7 each) (Fig. 2c–g; Fig. S2a, b). We found that the sera from fortilinKO-MΦ-HC mice had lower levels of inflammatory and pro-atherosclerotic cytokines, such as tumor necrosis factor α (TNF-α)32, interferon-γ (IFN-γ)33,34, and interleukin 23 (IL-23)35 (Fig. 2c–e), and higher levels of anti-inflammatory, anti-atherosclerotic cytokines such as TGF-β1 and TGF-β236,37 (Fig. 2f, g) and colony stimulating factor 3 (granulocyte (G)-CSF) (Fig. S2b)38,39. Because TGF-βs are implicated in organ fibrosis40, we measured the expression levels of fibrosis-related genes (type I collagen, Col1a1; type III collagen, Col3a1; and type IV collagen, Col4a1) in the lungs, kidneys, and livers of 20-week-old fortilinWT-MФ-HC and fortilinKO-MФ-HC mice. We found no significant differences between the two groups (Fig. S2c), which suggests that the degree of elevation in serum TGF-β1 and TGF-β2 levels observed in fortilinKO-MФ-HC mice is unlikely to induce fibrosis-related genes in major organs. The serum levels of other pro-atherosclerotic cytokines, including eotaxin (CCL11, C-C motif chemokine ligand 11)41, IL-1α42, IL-643, and RANTES (CCL5)44, were not significantly different between fortilinWT-MФ-HC and fortilinKO-MФ-HC mice (Fig. S2a). Interestingly, serum levels of some of the cytokines that are reported to be either anti-inflammatory or anti-atherosclerotic, such as IL-445 and IL-1346, were significantly higher in fortilinWT-MФ-HC than in fortilinKO-MФ-HC mice (Fig. S2b). The serum level of IL-10, another anti-inflammatory cytokine47, was also numerically higher—albeit not statistically significantly—in fortilinWT-MФ-HC than in fortilinKO-MФ-HC mice (Fig. S2b).

Imaging mass cytometry (IMC) analyses revealed that the atherosclerotic intima of fortilinKO-MΦ-HC mice exhibited drastically fewer MΦ and more VSMCs

To further characterize the atherosclerotic lesions of fortilinKO-MΦ-HC and fortilinWT-MΦ-HC mice, we subjected the cross-sectioned aortic root tissue samples from these mice to IMC, which is a highly multiplexed, protein-level, single-cell-level, immunohistochemical analysis method48,49. Fig. 3a–b show the workflow of this procedure, which is described in detail in the “Materials and Methods” section of the manuscript.

Fig. 3: Imaging mass cytometry (IMC) shows drastic reduction in MФ and increase in VSMCs in the atherosclerotic intima of fortilinKO-MФ-HC mice compared with fortilinWT-MФ-HC mice.
figure 3

UMAP uniform manifold approximation and projection, ECs endothelial cells, MФ macrophages, VSMCs vascular smooth muscle cells, αSMA α-smooth muscle cell actin, WT fortilinWT-MФ-HC, KO fortilinKO-MФ-HC, αSMA alpha smooth muscle cell actin, CD31 Cluster of Differentiation 31, DAPI 4’,6-diamidino-2-phenylindole, TD transmitted detector light, A.U. arbitrary unit. a IMC workflow with data acquisition and (b) data visualization. c Hematoxylin eosin (H&E) staining (top panels) and multiplex visualization of ECs, MФ, VSMCs, and the nuclei (bottom panels). d Cellularity analysis of atherosclerotic intima of WT and KO mice showing the number of cells in unit cross-sectional area. UMAP visualization of (e) MФ (Mac2), (f) VSMCs (αSMA), and (g) ECs (CD31) for a pooled group of single cells from the intima of WT and KO mice. h Cell composition analysis on the pooled group of single cells from the intima of WT and KO mice. Per-sample comparison of Mac2+ (i), αSMA+ (j), CD31+ (k), or other cells (l) in the atherosclerotic intima of KO mice with those of WT mice. m, n Immunofluorescence staining of the atherosclerotic intima of WT and KO mice using α-Mac, α-αSMA, and α-CD31 antibodies to visualize MΦ, VSMCs, and ECs, respectively (m). Expression indices were calculated for each marker by dividing the area occupied by the marker signal by the total atherosclerotic plaque area (region of interest)(n). The scale bar in (c) represents 100 µm, while the one in (m) represents 200 μm. Data are expressed as mean ± s.d., P values determined by two-sided Student’s t test (d, il, n) are shown.

We first performed a cellularity assay in which we counted the number of cells localized within the intima using the Steinbock semiautomated cell segmentation strategy50. We found that the atherosclerotic intima of fortilinKO-MΦ-HC mice contained a smaller number of cells per unit surface area than that of fortilinWT-MΦ-HC mice (WT vs. KO = 4823 ± 1192 vs. 2269 ± 1114 cells/mm2, P = 0.004, Student’s t test) (Fig. 3d). We then performed a cell composition assay in which we pooled 1050 cells each from the intima of fortilinWT-MΦ-HC and fortilinKO-Φ-HC mice and, using the Uniform Manifold Approximation and Projection (UMAP) dimensionality reduction51, resolved the pooled cells into the three distinct cell types commonly identified in the atherosclerotic intima52—endothelial cells (ECs, identified by CD31 positivity53), MФ (identified by Mac2 positivity54), and VSMCs (identified by alpha smooth muscle actin (αSMA)-positivity)55) (Fig. 3e–g). We then determined the percentages of Mac2+αSMA-CD31-(MФ), Mac2-αSMA+CD31-(VSMCs), and Mac2-αSMA-CD31+(ECs) using the gating function of the Cytobank™ platform (Beckman Coulter Life Sciences, Carlsbad, CA, USA)56,57, analyzing both the pooled sample set (Fig. 3e–h) and individual per-animal sample sets (Fig. 3i–l). We found that the atherosclerotic intima of fortilinKO-MΦ-HC mice contained fewer MФ than that of fortilinWT-MΦ-HC mice (Fig. 3e, h, i). Interestingly, the atherosclerotic intima of fortilinKO-MΦ-HC mice contained more VSMCs compared to that of fortilinWT-MΦ-HC mice (Fig. 3f, h, j), even after taking into account that the intima of fortilinKO-MΦ-HC mice contained a lower total number of cells than that of fortilinWT-MΦ-HC mice, in which the absolute numbers of VSMCs in the intima was greater in KO than WT mice (WT vs. KO = 159 VSMCs vs. 1069 VSMCs; Fig. 3d, f). ECs constituted a small portion of the intimal cells and were similarly represented in both fortilinKO-MΦ-HC and fortilinWT-MΦ-HC mice (Fig. 3g, h, k). The percentage of cells that did not express Mac2, αSMA, or CD31 (Mac2-αSMA-CD31-) was higher in the intima of fortilinKO-MΦ-HC mice than that of fortilinWT-MΦ-HC mice (Fig. 3l). These data suggest that the lack of fortilin in MФ leads to an overall reduction in the cellularity in the intima (Fig. 3d) and a drastic change in its cell composition, with decreased MΦ and increased VSMC populations (Fig. 3h).

To further validate the above IMC findings, we quantified the expression levels of markers for MΦ (Mac2), VSMCs (αSMA), and ECs (CD31) in cross-sectioned aortic root tissues from fortilinWT-MΦ-HC and fortilinKO-MΦ-HC mice, using four-color immunofluorescence (IF) staining (Fig. 3m). Mac2 expression was significantly higher in fortilinWT-MΦ-HC mice compared to fortilinKO-MΦ-HC mice (Fig. 3n, Mac2), whereas αSMA expression was significantly lower in fortilinWT-MΦ-HC mice than in fortilinKO-MΦ-HC mice (Fig. 3n, αSMA). CD31 expression was comparable between two groups (Fig. 3n, CD31). These findings (Fig. 3m, n) are congruent with the IMC data (Fig. 3e–k), further supporting the conclusion that fortilin deficiency in MФ reduces MΦ content while increasing VSMCs, without significantly impacting the EC population.

In addition to identifying a difference in the percentages of MΦ, VSMCs, and ECs between the intima of fortilinKO-MΦ-HC and fortilinWT-MΦ-HC mice (Fig. 3e–n), we also calculated the expression levels of proteins of interest and normalized them to the cross-sectional intimal area (Fig. S3a, c–p). For example, we calculated the fortilin expression index (E.I.fortilin) for a sample by summing up all fortilin signals within intimal cells of the sample, dividing the result by the cross-sectional intimal area of the sample, and expressing it as an arbitrary unit (A.U.). We repeated the same calculation for other proteins of interest from the samples of fortilinWT-MΦ-HC and fortilinKO-MΦ-HC mice and compared the means of the two groups using Student’s t test. As expected, E.I.fortilin was significantly lower in the intima of fortilinKO-MΦ-HC mice than in that of fortilinWT-MΦ-HC mice (P = 0.024, N = 6–9, Fig. S3a).

Furthermore, when comparing fortilin expression levels between fortilinWT-MΦ-HC and fortilinKO-MΦ-HC samples across the three gated cell types—MΦ (Fig. 3e), VSMCs (Fig. 3f), and ECs (Fig. 3g)—we found that fortilin expression was significantly lower in the MΦ of fortilinKO-MΦ-HC compared to those in fortilinWT-MΦ-HC samples (Fig. S3b, columns 1&2, WT vs. KO = 0.15 ± 0.19 vs. 0.085 ± 0.077, P < 0.0001, Kruskal-Wallis test, N = 750 and 139). In contrast, fortilin expression levels in VSMCs and ECs did not differ between fortilinWT-MΦ-HC and fortilinKO-MΦ-HC samples (Fig. S3b, columns 3–6). These results suggest that the lower E.I.fortilin observed in the intima of fortilinKO-MΦ-HC mice compared to fortilinWT-MΦ-HC mice is primarily driven by the reduced fortilin expression in MΦ rather than in VSMCs or ECs.

Using the same algorithm employed to calculate E.I.fortilin, we determined the E.I.s for αSMA (VSMCs, Fig. S3c), CD31 (ECs, Fig. S3d), CD45 (all leukocytes, Fig. S3e), Mac2 (MФ, Fig. S3f), CD11b (MФ, Fig. S3g), F4-80 (MФ, Fig. S3h), CD11c (dendritic cells, Fig. S3i), CD3 (T cells, Fig. S3j), CD19 (B cells, Fig. S3k), B220 (B cells, Fig. S3l), CD68 (MΦ, M1 type, Fig. S3m), CD38 (MΦ-M1, Fig. S3n), and CD206 (MΦ-M2, Fig. S3o). Overall, we observed that the lack of fortilin decreased the infiltration of MΦ and other immune cells (T cells, B cells, dendritic cells) into the atherosclerotic intima (Fig. S3e–o).

The lack of fortilin promoted oxLDL-induced apoptosis, slowed proliferation, and mitigated FC formation in MΦ in cell-based assays

To explore the mechanism by which the lack of fortilin decreases the MΦ population in the atherosclerotic intima, we first tested whether the lack of fortilin sensitizes MФ to oxLDL-induced apoptosis. We incubated peritoneal MΦ from fortilinWT-MΦ (MΦWT-fortilin) and MФKO-fortilin mice with oxLDL and subjected them to a standard DNA fragmentation assay. We found that MФKO-fortilin underwent significantly more apoptosis than did MФWT-fortilin at 125, 250, and 500 µg/mL of oxLDL (Fig. 4a; P = 0.014, 0.046, and 0.046, respectively; Student’s t test).

Fig. 4: The lack of fortilin in MФ promotes oxLDL-induced apoptosis, slows cell proliferation, halts foam cell (FC) formation, and reduces CD36 expression.
figure 4

A.U. arbitrary unit, WT THP1WT-fortilin cells, KO THP1KO-fortilin cells, MTS 3-(4,5-dimethylthiazol-2-yl)-5-(3-carboxymethoxyphenyl)-2-(4-sulfophenyl)-2H-tetrazolium, inner salt; BrdU bromodeoxyuridine, oxLDL oxidized low density lipoprotein, IB immunoblot, α-CD36 anti-CD36 antibody, ACs apoptotic cells, FarRed+ cells labeled by CellTrace™ Far Red, CFSE+ cells labeled by CellTrace™ CSFE. a DNA fragmentation assay of peritoneal macrophages (MΦ) from fortilinWT-MФ and fortilinKO-MФ mice when stimulated by vehicle or various concentrations of oxLDL (n = 5, 5; for each concentration of oxLDL). b DNA fragmentation assay of THP1WT-fortilin (WT) and THP1KO-fortilin (KO) cells with or without oxLDL stimulation (n = 3, 3). c MTS growth assay of THP1WT-fortilin and THP1KO-fortilin cells (n = 8, 8). d BrdU incorporation assay of induced peritoneal MФ from fortilinWT-MФ-HC and fortilinKO-MФ-HC mice (n = 6, 6). e FC quantification by Oil-Red-O staining of peritoneal MФ induced from fortilinWT-MФ-HC and fortilinKO-MФ-HC mice (n = 4, 4). f flow-cytometry-based FC formation assay using THP1WT-fortilin and THP1KO-fortilin cells (n = 3, 3). g JESS-based western blot analyses to assess the expression levels of CD36, an oxLDL receptor, with and without oxLDL stimulation, using THP1WT-fortilin and THP1KO-fortilin cells (n = 3, 3). h Efferocytosis assay. Workflow of the assay , representative flow cytometry plots , and efferocytosis indices of WT and KO cells are shown. In (e), the scale bar equals 100 µm. Data are expressed as mean ± s.d., P values—determined by either two-sided Student’s t test (af, h) or one-way ANOVA with Tukey’s comparison (g)—are shown.

Next, we used Crispr Cas9 methods58 to delete fortilin in THP1 cells (THP1KO-fortilin; control = THP1WT-fortilin) and then characterized the cells. Both western blot analysis and immunofluorescence staining showed that THP1KO-fortilin did not express any fortilin (Fig. S4a, b). We then subjected THP1KO-fortilin and THP1WT-fortilin to vehicle or 200 µg/mL of oxLDL and measured the degree of DNA fragmentation. The DNA fragmentation index was 41% higher in THP1KO-fortilin than in THP1WT-fortilin at baseline (Fig. 4b, oxLDL(–), P < 0.0001, Student’s t test). Upon oxLDL challenge, THP1KO-fortilin exhibited a 112% higher DNA fragmentation index (Fig. 4b, oxLDL(+), P < 0.0001, Student’s t test), suggesting that the lack of fortilin not only increased the baseline apoptosis of THP1 cells but also sensitized THP1 cells to oxLDL-induced apoptosis.

Intriguingly, in the whole-animal atherosclerotic tissue of 10-month-old mice, fortilinWT-MΦ-HC mice exhibited higher levels of activated caspase-3 than fortilinKO-MΦ-HC mice (Fig. S3p), which was driven by an increased presence of activated caspase-3 in both MΦ and ECs (Fig. S3q, columns 1 vs. 2, 5 vs. 6). These data, when taken together with the cellular data, suggest that MΦ apoptosis may have occurred earlier and more extensively in fortilinKO-MΦ-HC mice than in fortilinWT-MΦ-HC mice and that the full and cumulative extent of MΦ apoptosis in fortilinKO-MΦ-HC mice may not be fully captured at the late time point of 10 months.

To evaluate how the lack of fortilin impacts the proliferation of MФ, we first subjected THP1KO-fortilin and THP1WT-fortilin to the 3-(4,5-dimethylthiazol-2-yl)-5-(3-carboxymethoxyphenyl)-2-(4-sulfophenyl)-2H-tetrazolium, inner salt (MTS) assay59. The growth index of THP1WT-fortilin was greater than that of THP1KO-fortilin at 24, 48, 72, and 96 h (Fig. 4c; P < 0.0001 for all four time points, Student’s t test). When assessing the incorporation of 5-bromo-2’-deoxyuridine (BrdU) into peritoneal MФ from fortilinWT-MФ-HC and fortilinKO-MФ-HC mice, we consistently found that the lack of fortilin in MФ significantly decreased BrdU incorporation into these cells (Fig. 4d, P = 0.0029, Student’s t test). These data suggest that the lack of fortilin increases ox-LDL-induced apoptosis (Fig. 4a, b) and decreases proliferation of MΦ (Fig. 4c, d).

Although the lack of fortilin did not impact the ability of MФ to migrate (Fig. S4c) or phagocytose (Fig. S4d), we found that the presence of fortilin was required for MФ to become FCs. Our in vivo FC formation assay showed that the lack of fortilin drastically reduced the ability of MФ to become FCs (Fig. 4e; fortilinWT-MΦ-HC vs. fortilinKO-MΦ-HC = 12.6 ± 2.2 vs. 2.7 ± 2.7 (A.U.), P = 0.0013, Student’s t test). To further validate the role of MФ fortilin in FC formation, we subjected THP1KO-fortilin and THP1WT-fortilin to a FC formation assay using flow cytometry. Again, we found that the lack of fortilin decreased FC formation by about 95% (Fig. 4f; THP1WT-fortilin vs. THP1KO-fortilin = 27.33 ± 0.52 vs. 1.24 ± 0.00, P < 0.0001, Student’s t test). Next, we tested the status of CD36, an oxLDL receptor60, by stimulating THP1WT-fortilin and THP1KO-fortilin cells with oxLDL and subjecting their lysates to JESS™, a highly quantitative capillary-based western blot system (ProteinSimple®, San Jose, CA, USA)24. We found that THP1WT-fortilin expressed more CD36 than THP1KO-fortilin in the absence of oxLDL (Fig. 4g, lanes 1–3 vs. 4–6) and that oxLDL stimulation significantly increased CD36 expression in THP1WT-fortilin (Fig. 4g, lanes 1–3 vs. 7–9, quantified in the graph on the right) but not in THP1KO-fortilin (Fig. 4g, lanes 4–6 vs. 10–12, quantified in the graph on the right). These results suggest that the lower CD36 expression contributed to the reduced oxLDL uptake and FC formation in THP1KO-fortilin. Finally, we followed a protocol published by Salina et al.61 to perform a flow cytometry-based efferocytosis assay to evaluate the impact of fortilin on efferocytosis. Efferocytosis is the process by which dying cells are recognized, engulfed, and cleared by MΦ to protect the microenvironment against inflammation caused by the release of previously sequestered intracellular contents from the disintegrated apoptotic cells62,63. We added CellTrace™ Far Red-labeled (red), apoptosing Jurket cells to CellTrace™ CFSE-labeled (green) THP1WT-fortilin and THP1KO-fortilin cells in two rounds, incubated them, stained them with Zombie NIR (near-infrared, for the identification of dead cells)(Fig. 4h-1), and determined the percentage of CFSE+ZombieNIR-FarRed+ cells (living THP1 cells that have engulfed apoptotic Jurket cells) within the total CFSE+ZombieNIR- cell population (living THP1) using a flow cytometer (Figs. 4h-2, S4e). We found that the engulfment indices were similar between THP1WT-fortilin and THP1KO-fortilin cells (Fig. 4h-3, THP1WT-fortilin vs. THP1KO-fortilin = 53.20 ± 11.63 vs. 55.10 ± 8.93%, N = 4, P = 0.8043, Student’s t test), suggesting that fortilin does not affect efferocytosis. In summary, these data suggest that the lack of fortilin decreases the MΦ population in the atherosclerotic intima by (i) increasing MΦ apoptosis, (ii) decreasing MΦ proliferation, and (iii) decreasing FC formation through the downregulation of CD36, an oxLDL receptor60, and that the lack of fortilin does not impact (i) migration, (ii) phagocytosis, or (iii) efferocytosis.

The lack of fortilin reversely transdifferentiated MΦ to VSMCs

Although the cellular data explain why the lack of fortilin led to drastic reduction in MФ in the intima in the whole-animal experiment (Fig. 3e–i; Fig. S3f–h, m, n), they do not necessarily explain the increase in the absolute number of VSMCs in the intima of fortilinKO-MФ-HC mice (Fig. 3f, h, j) compared with that of fortilinWT-MФ-HC mice. VSMCs contribute to the thickening of the fibrous cap of plaques and are considered to be protective against plaque rupture in mature atherosclerotic lesions64. Because MФ reportedly can transdifferentiate to myofibroblasts65, we tested the hypothesis that the lack of fortilin transdifferentiates MФ to VSMCs. We stimulated THP1KO-fortilin (Fig. 5a, KO) and THP1WT-fortilin (Fig. 5a, WT) cells with either vehicle or oxLDL and assessed the expression status of VSMC markers (αSMA, smooth muscle 22 alpha (SM22α), and calponin-1 (CNN1))66 as well as MФ markers (Mac2 (also known as galectin-3)67 and CD6868), using both RT-qPCR (Fig. 5b–f) and western blotting (Fig. 5g). Regardless of oxLDL stimulation, both assays showed that THP1KO-fortilin expressed higher levels of VSMC markers compared to THP1WT-fortilin (Fig. 5b–d, g-B, g-C, g-D). THP1KO-fortilin expressed lower levels of MΦ markers than THP1WT-fortilin (Fig. 5e, f, g-E, g-F).

Fig. 5: The lack of fortilin reverses transdifferentiated MФ into VSMCs.
figure 5

A.U. arbitrary unit, RT-qPCR reverse transcription quantitative polymerase chain reaction, WT THP1WT-fortilin cells, KO THP1KO-fortilin cells, oxLDL oxidized low density lipoprotein, αSMA alpha smooth muscle cell actin, CD68 Cluster of Differentiation 68, TCE, 2,2,2-trichloroethanol total protein staining, GAPDH glyceraldehyde-3-phosphate dehydrogenase, phMΦ primary human macrophages, CTL control, phMΦ transduced by control short hairpin RNA (shRNAcontrol) lentiviral particles, KD knockdown, phMΦ transduced by shRNAfortilin lentiviral particles. a Expression levels of fortilin in WT and KO cells with and without oxLDL stimulation. bf Status of expression of VSMC markers (αSMA, SM22α, CNN1) (bd) and MФ markers (Mac2, CD68) (e, f) in WT and KO cells as analyzed by RT-qPCR (n = 3, 3). g Western blot analysis of VSMC and MΦ markers in WT and KO cells at their baselines and upon oxLDL stimulation. h Successful KD of fortilin using shRNAfortilin lentivirus particles in phMΦ. Status of expression of VSMC markers (ik) and MΦ markers (l, m) in CTL and KD phMΦ cells as analyzed by RT-qPCR (n = 3, 3). Data are expressed as mean ± s.d., P values determined by one-way ANOVA with Tukey multiple comparisons (af,hm) are shown. The findings in (g) were confirmed in three independent experiments.

To further verify these findings, we transduced primary human MΦ (phMΦ) with lentiviral particles carrying either control short-hairpin RNA (shRNAcontrol) or shRNAfortilin, selected the transduced cells (phMΦsh-control and phMΦsh-fortilin) for 3 days on puromycin, and subjected their RNA to RT-qPCR for the above markers of VSMCs and MΦ. We found that shRNAfortilin effectively silenced fortilin mRNA expression (Fig. 5h) and that phMΦsh-fortilin expressed significantly higher levels of VSMC markers compared to phMΦsh-control (Fig. 5i–k), regardless of oxLDL stimulation. phMΦsh-fortilin expressed significantly lower levels of Mac2, regardless of oxLDL stimulation (Fig. 5l), and CD68, when stimulated by oxLDL (Fig. 5m), compared to phMΦsh-control. These data suggest that fortilin is required to maintain the expression of MΦ markers in MΦ and that the lack of it causes the cells to lose these markers and instead express VSMC markers. It is plausible that fortilin sustains MΦ phenotypes and that fortilin deficiency in MΦ results in the reverse transdifferentiation of MΦ to VSMCs in the atherosclerotic intima. In fact, Feil et al. reported that the transdifferentiation of VSMCs to MФ occurs during atherogenesis69.

Finally, cytokine profiling using a multiplex bead-based assay system (Miiliplex®) showed that two clones of THP1KO-fortilin (KOC & KOG) secreted less pro-inflammatory cytokines (IL-1β, IL-2, IL-7, IL-8, IL-12, granulocyte-macrophage colony stimulating factor (GM-CSF), IFNγ, TNFα70; Fig. S5a, b, d, e, f, g, h, i, respectively) and more anti-inflammatory cytokines70 (IL-4, IL-571, IL-10, and IL-13; Fig. S5j, k, l, m, respectively) into the medium than did THP1WT-fortilin. Interestingly, THP1KO-fortilin secreted more IL-6, a presumably pro-atherosclerotic cytokine72, than did THP1WT-fortilin cells (Fig. S5c).

Fortilin-deficient MΦ secreted TGF-β and promoted the differentiation of MSCs to VSMCs

The increase in VSMC mass in the atherosclerotic intima of the fortilinKO-MΦ-HC mice (Fig. 3f, h, j) may be due to both increased transdifferentiation of fortilin-null MΦ to VSMCs and increased differentiation of MSCs to VSMCs. To test the hypothesis that a cytokine(s) secreted by THP1KO-fortilin drives the differentiation of MSCs to VSMCs, we cultured human umbilical cord-derived MSCs (UCDMSCs) with the conditioned medium (CM) from either THP1KO-fortilin or THP1WT-fortilin cells for 72 and 120 h and evaluated the expression levels of VSMC marker genes (αSMA, SMA22α, & CNN1) using RT-qPCR (Fig. 6a). We used TGF-β1 as the positive control for the differentiation of MSCs to VSMCs73,74,75,76 and plain media as negative controls.

Fig. 6: The lack of fortilin differentiates mesenchymal stem cells into VSMCs through TGFβ1.
figure 6

CM conditioned media, WT THP1WT-fortilin cells, KO THP1KO-fortilin cells, oxLDL oxidized low density lipoprotein, UCDMSCs human umbilical cord derived mesenchymal stem cells, M media, F.C. fold change, α-TGF-β1-MB anti-TGF-β1-antibody-coated magnetic beads, ID-CM CM immunodepleted of TGF-β1, TGF-β1 ID media with TGF-β1 immunodepleted of TGF-β1. Time-course of RT-qPCR of RNA from UCDMSCs treated by either M only, M + TGF-β1, CM of THP1KO-fortilin, or CM of THP1WT-fortilin (a) for VSMC markers (αSMA (b); SM22α (c); and CNN1 (d)), a differentiation marker (CD45; e); and a marker of undifferentiated cells (CD105, f) (n = 3 for each group). g ELISA of CM from THP1WT-fortilin cells and THP1KO-fortilin cells with and without oxLDL stimulation (n = 4 for each group). RT-qPCR of RNA from UCDMSCs treated by either M only with and without TGF-β1 ID, M + TGF-β1 with and without TGF-β1 ID, CM of THP1KO-fortilin with and without TGF-β1 ID, or CM of THP1WT-fortilin with and without TGF-β1 ID (h) for VSMC markers αSMA (i), SM22α (j), and CNN1 (k); a differentiation marker (CD45, l); and a marker of undifferentiated cells (CD105, m) (n = 3 for each group). Data are expressed as mean ± s.d. P values determined by one way ANOVA (bg, im) are shown.

We found that UCDMSCs expressed significantly higher levels of αSMA, SM22α, and CNN1 when cultured with the CM from THP1KO-fortilin cells than with that from THP1WT-fortilin cells at both 72 and 120 h (Fig. 6b–d; CM-THP1KO-fortilin vs. CM-THP1WT-fortilin, Student’s t test, P values shown in the figures). In addition, the expression levels of differentiation marker genes (CD45, CD34, and CD14) were significantly higher in UCDMSCs treated with the CM from THP1KO-fortilin cells than with that from THP1WT-fortilin cells at both 72 and 120 h, whereas the expression levels of stem cell marker genes (CD73, CD90, and CD10577) were significantly lower in UCDMSCs treated with the CM from THP1KO-fortilin cells than with that from THP1WT-fortilin cells at both time points (Fig. 6e, f; Fig. S6a–d; CM-THP1KO-fortilin vs. CM-THP1WT-fortilin, Student’s t test, P values shown in the figures). Notably, the expression levels of the VSMC differentiation, and stem cell marker genes did not differ between UCDMSCs treated with medium only and those treated with the CM from THP1WT-fortilin (Fig. 6e, f; Fig. S6a–d, M only vs. CM-THP1WT-fortilin). This result suggests that the CM from THP1WT-fortilin cells was incapable of inducing differentiation of UCDMSCs to VSMCs and that the CM from THP1KO-fortilin cells induced differentiation of UCDMSCs to VSMCs.

Although these results suggested that a cytokine(s) secreted from THP1KO-fortilin cells caused UCDMSCs to differentiate from the stem cell state into VSMCs, the specific cytokine responsible remained unidentified. TGF-β is produced by several different cell types, including ECs, VSMCs, MФ, platelets, and regulatory T cells (Treg)78. Because serum TGFβ-1 and TGFβ-2 levels were higher in fortilinKO-MФ-HC mice than in fortilinWT-MФ-HC mice (Fig. 2f, g), because the atherosclerotic intima of fortilinKO-MΦ-HC mice contained more VSMCs than did that of fortilinWT-MΦ-HC mice (Fig. 3f, h, j), and because TGF-β promotes the differentiation of MSCs to VSMCs73,74,75,76, we tested the hypothesis that TGFβ is that cytokine.

To evaluate this hypothesis, we first assessed whether MФ produce more TGF-β in the absence of fortilin than in its presence. We performed western blot on THP1WT-fortilin and THP1KO-fortilin cells with/without oxLDL stimulation and found that TGF-β1 expression was greater in THP1KO-fortilin than in THP1WT-fortilin cells and that the difference was greater with oxLDL stimulation (Fig. 5g-G). We then collected the CM of subconfluently seeded THP1KO-fortilin and THP1WT-fortilin cells stimulated by either vehicle or oxLDL and subjected them to enzyme-linked immunosorbent assays (ELISAs) of TGF-β1. We found that the CM from THP1KO-fortilin cells contained more TGF-β1 than that from THP1WT-fortilin cells, both with and without oxLDL stimulation (WT vs. KO = 311 vs 726 pg/mL for oxLDL (–); 400 vs. 1803 pg/mL for oxLDL (+), P < 0.0001 for both, Student’s t test) (Fig. 6g). We also found that the TGF-β1 release response from THP1KO-fortilin increased more robustly upon oxLDL stimulation than that from THP1WT-fortilin (oxLDL(–) vs. oxLDL(+) = 311 vs. 400 pg/mL for WT (28.6% increase, P = 0.271); 726 vs. 1803 pg/mL for KO (148.3% increase, P < 0.0001)) (Fig. 6g). These data suggest that fortilin deficiency causes MΦ to produce TGF-β1, especially in the presence of oxLDL, and they imply that fortilin deficiency has greater impact on the production of TGF-β1 from MΦ in the oxLDL-rich atherosclerotic vascular microenvironment than in the normal vascular microenvironment.

To definitively evaluate the above hypothesis, we then developed a TGF-β1 immunodepletion (ID) protocol in which CM from THP1KO-fortilin and THP1WT-fortilin, media alone, and media containing recombinant human TGF-β1 were incubated with α-TGF-β1 neutralizing monoclonal antibody. The immune complex was then precipitated by anti-mouse IgG-coated magnetic beads to generate immunodepleted CM and media (Fig. 6h). Western blot analysis confirmed that the TGF-β1 ID system was capable of depleting all detectable TGF-β1 (Fig. S6e, bands A1 vs. A2; A3 vs. A4; A5 vs. A6; and A7 vs. A8). Next, we incubated UCDMSCs for 120 h in one of the following conditions: media only, media containing TGF-β1, CM from THP1KO-fortilin, or CM from THP1WT-fortilin cells—each with or without TGF-β1 ID—and subjected their RNA to RT-qPCR to quantify VSMC marker gene expression (Fig. 6h). In the absence of ID, UCDMSCs robustly and significantly expressed VSMC marker genes (αSMA, SM22α, and CNN1) when incubated in media spiked with TGF-β1 compared to media alone (Fig. 6i–k-columns 1 vs. 3). In contrast, in the presence of ID, UCDMSCs failed to express any of the VSMC marker genes when incubated in TGF-β1-spiked media, further confirming the effectiveness of the ID system (Fig. 6i–k-columns 3 vs. 4). In this system, UCDMSCs expressed the VSMC marker genes when incubated in CM from THP1KO-fortilin, but not in CM from THP1WT-fortilin (Fig. 6i–k-columns 5 vs. 7), reinforcing the observations shown in Fig. 6b–d. Strikingly, ID of TGF-β1 completely abolished the ability of the CM from THP1KO-fortilin cells to induce VSMC marker expression (Fig. 6i–k, columns 7 vs. 8). These data suggest that the induction of VSMC marker expression in UCDMSCs by CM from THP1KO-fortilin is mediated by TGF-β1.

We also observed that both media spiked with TGF-β1 and CM from THP1KO-fortilin cells without ID (columns 3 and 7, respectively), but not those with ID (columns 4 and 8, respectively), caused UCDMSCs to express the differentiation markers CD14 (Fig. S6f), CD34 (Fig. S6g), and CD45 (Fig. 6l) and that they prevented UCDMSCs from expressing the MSC markers CD73 (Fig. S6h), CD 90 (Fig. S6i), and CD105 (Fig. 6m). These findings suggest that TGF-β1 induces differentiation of UCDMSCs and, when taken together with the data from Fig. 6i–k, that the differentiation results in their transition to VSMCs.

Summary

The lack of fortilin induces MΦ apoptosis (especially in high oxLDL environments), decelerates MΦ proliferation and lipid uptake, increases TGF-β1 secretion from MΦ, and TGF-β1-dependently transdifferentiates MΦ and differentiates MSCs into VSMCs. Collectively, fortilin is pro-atherosclerotic (Fig. 7a) through its diverse biological activities, whereas the lack of fortilin is anti-atherosclerotic (Fig. 7b).

Fig. 7: Profound phenotypic changes induced by fortilin in MΦ that make MΦ anti-atherosclerotic.
figure 7

FT fortilin, MΦ macrophages, VSMCs vascular smooth muscle cells, MSCs mesenchymal stem cells. The lack of fortilin in MΦ produces profound phenotypic changes, making MΦ anti-atherosclerotic. More specifically, fortilin deficiency in MΦ suppresses their proliferation and FC formation, but promotes their apoptosis, TGF-β1 secretion, and transdifferentiation into VSMCs, and also drives MSC differentiation into VSMCs via TGF-β1 (b), compared with normal fortilin expression (a).

Discussion

We previously reported that fortilin global (constitutional) KO mice (heterozygous, fortilin+/-) placed in the genetic background of the Ldlr–/–Apobec1–/– (HC) mice (fortilin+/–&HC) developed less atherosclerosis than their control fortilin+/+&HC mice28. However, we still did not know which cell type(s) drove the anti-atherosclerotic phenotype of fortilin+/-&HC mice. One of the most significant findings of the current study is that MΦ-specific fortilin KO mice (fortilinKO-MΦ), when placed in the HC genetic background (fortilinKO-MΦ-HC), developed drastically less atherosclerosis than their control fortilinWT-MΦ-HC mice (Fig. 2a, b). This result strongly supports the premise that fortilin drives atherosclerosis in the mouse model of atherosclerosis.

This reduction of atherosclerosis in fortilinKO-MФ-HC mice was not due to favorable changes in the lipid profile, as lipid profiles of the two groups were similar (Fig. 1h–l; Fig. S1b–d). Body weights of fortilinKO-MФ-HC mice were numerically mildly and statistically significantly greater than those of fortilinWT-MФ-HC mice (Fig. 1g), making it unlikely that body weight played a role in the anti-atherosclerotic phenotype of fortilinKO-MФ-HC mice as obesity promotes atherosclerosis79. Complete blood counts showed no significant difference in white blood cell, monocyte, eosinophil, or basophil counts between the two groups (Fig. S1e). Although we detected a mild and statistically significant difference in neutrophil and lymphocyte counts between the two groups (Fig. S1e), it is unlikely that the small difference led to the drastically reduced atherosclerosis in fortilinKO-MФ-HC mice. Erythrocyte and platelet counts were also similar between the two groups (Fig. S1f, g).

The mechanism by which fortilin deficiency in MΦ leads to the drastic reduction of atherosclerosis (Fig. 2a, b) was revealed by the IMC results, which showed a dramatic reduction of the MΦ population in the atherosclerotic intima in terms of both the absolute number and percentage of MΦ (WT vs. KO absolute number = 3439 vs. 300 cells/mm2; WT vs. KO percentage = 71.3% vs. 13.2%; these numbers were derived from the 1050 pooled cells from all samples; Fig. 3d, e, h, i; Fig. S3f–h, m, n). MΦ drives atherosclerogenesis: In the intima, MΦ take up oxLDL to become FCs, proliferate, produce pro-inflammatory cytokines to exacerbate local and systemic inflammation, and weaken the fibrous cap of the plaque by producing various proteases, ultimately leading to catastrophic plaque rupture and acute coronary syndrome80. The idea that fortilin deficiency in MΦ results in the amelioration of atherosclerosis through robust reduction of the MΦ population in the atherosclerotic intima aligns with the current paradigm that reducing the MΦ population exerts plaque-stabilizing effects, at least in early-stage lesions62. Further investigation, however, is needed to elucidate the role of fortilin-deficient MΦ in the intima of the advanced atherosclerotic arteries.

Our cellular assays demonstrated that the depletion of the MΦ population in the atherosclerotic intima of fortilinKO-MΦ-HC mice was multifactorial and due to (a) increased apoptotic MΦ death, especially upon oxLDL simulation (Fig. 4a, b), (b) decreased MΦ proliferation (Fig. 4c, d), and (c) decreased MΦ uptake of oxLDL (Fig. 4e & f), at least partially due to the downregulation of CD36, an oxLDL receptor60, in fortilin-deficient MΦ (Fig. 4g). The cellular assays also suggested that fortilin deficiency is unlikely to impact efferocytosis (Figs. 4h, S4e), migration (Fig. S4c), or phagocytosis (Fig. S4d).

Fortilin deficiency in MΦ and resultant MΦ depletion in the atherosclerotic intima had a profoundly beneficial immuno-inflammatory impact at both the tissue and whole-animal levels. The absence of fortilin drastically reduced the circulation of pro-inflammatory cytokines such as TNFα32, IFNγ33,34, and IL-2335 (Fig. 2c–e) while increasing the serum levels of the anti-inflammatory cytokines TGF-β1 and TGF-β236,37 (Fig. 2f, g). This shift likely disrupted—in fortilinKO-MΦ-HC mice—the inflammation-perpetuating vicious cycle where tissue MΦ release pro-inflammatory cytokines into circulation that, in turn, recruits additional MΦ to the intima further amplifying local inflammation.

Importantly, while fortilin-deficiency in MΦ reduced their population in the intima and thereby substantially contributed to the reduction of systemic inflammation in whole animals (Fig. 2c–g), it also induced profound phenotypic changes in the MΦ themselves.

First, unlike THP1WT-fortilin, fortilin-deficient MΦ (THP1KO-fortilin) were incapable of producing pro-inflammatory cytokines (IL-1β, IL-2, IL-7, IL-8, IL-12, GM-CSF, IFNγ, TNFα70; Fig. S5a, b, d, e, f, g, h, i, respectively). However, THP1KO-fortilin secreted higher levels of anti-inflammatory cytokines70 (IL-4, IL-571, IL-10, IL-13, and TGF-β136,37; Fig S5j, k, l, m, Fig. 6g, respectively) into the medium compared to THP1WT-fortilin.

Second, as demonstrated using both the THP1 human MΦ cell line (THP1KO-fortilin and THP1WT-fortilin) and phMΦ, fortilin deficiency induced the expression of VSMC marker genes (αSMA, SM22α, and CNN1; Fig. 5b–d, g-B–D, i–k) while suppressing MΦ marker gene expression (MAC2, CD68; Fig. 5e, f, g-E, g-F, l, m). These data suggest that fortilin-deficient MΦ transdifferentiate to VSMCs. However, further studies are needed to validate the notion that such transdifferentiation indeed occurs in fortilin-deficient MΦ in whole animals. For example, linage-tracing experiments could confirm that a subset of fortilin-deficient MΦ bearing a LyM-activated lineage marker differentiate into VSMCs in the atherosclerotic intima. Our cellular studies using both THP1 and phMΦ (Fig. 5), which support this possibility, provide a strong justification for conducting future in vivo lineage-tracing experiments.

The transdifferentiation of MΦ to VSMCs—a phenotypic transition characterized by the concurrent loss of MΦ markers (e.g., Mac2, CD11b) and the acquisition of VSMC markers (e.g., αSMA)—has been previously reported81. Zhuang et al. treated LysM-Cre;Rosa26Td mice with angiotensin II and performed flow cytometry on single non-myocardial cells from the heart. Intriguingly, among the Td+ cells—representing the myeloid lineage cells with prior LysM expression—there were a population that expressed αSMA but lacked CD11b (Td+αSMA+CD11b-). The findings suggest that cells of myeloid origin can transition to cells bearing only VSMC markers81, thereby supporting our current observation that MΦ can transdifferentiate into VSMCs (Fig. 5b-m).

Third, fortilin-deficient MΦ secrete TGF-β1 and direct the differentiation of MSCs into VSMCs (Fig. 6; Fig. S6). When UCDMSCs were cultured with conditioned media (CM) from THP1KO-fortilin cells—but not from THP1WT-fortilin cells—they gradually lost stem cell markers (CD73, CD90, and CD105; Fig. S6c, d; Fig. 6f), acquired differentiation markers (CD14, CD34, and CD45; Fig. S6a, b; Fig. 6e), and expressed VSMC markers (αSMA, SM22α, and CNN1; Fig. 6b–d). This differentiation was driven by TGF-β1 secreted by THP1KO-fortilin cells because (a) THP1KO-fortilin produced significantly more TGF-β1 than did THP1WT-fortilin (Fig. 6g) and (b) immunodepletion (ID) of TGF-β1 from the CM of THP1KO-fortilin nullified it ability to induce differentiation of UCDMSCs into VSMCs (Fig. 6i–k). The transdifferentiation of fortilin-deficient MΦ into VSMCs as well as the fortilin-deficient MΦ-induced differentiation of MSCs into VSMCs in the cellular system collectively manifested themselves in a significant increase in intimal VSMCs in the whole-animal system (WT vs. KO = 34 vs. 495 VSMCs/mm2, P = 0.004; and 3.3% vs. 47.1%, P < 0.0001; respectively, Student’s t test; Fig. 3f, h, j).

One of the defining features of unstable, rupture-prone atherosclerotic plaques—identified by post-mortem and clinical imaging studies—is a thin or fragmented fibrous cap64. The fibrous cap is the luminal layer of the atherosclerotic intima consisting of VSMCs and extracellular matrix overlying MΦ and a lipid core64. The rupture of this cap in coronary arteries exposes blood stream to the highly thrombogenic lipid core, triggering platelet activation and aggregation, and initiation of the coagulation cascade and thrombus formation, ultimately resulting in MI82. An increased presence of VSMCs in the atherosclerotic intima is considered to confer stability to plaques64. Our finding of a substantial increase of VSMCs in the atherosclerotic intima of fortilinKO-MΦ-HC mice compared to fortilinWT-MΦ-HC mice (Fig. 3f, h, j) suggests that targeting of fortilin may stabilize plaques and make them less susceptible to the rupture. To test this hypothesis, however, further studies are needed to fully characterize plaque architecture in these mice, including the spatial distribution of VSMCs, as well as assessments of their proliferation, apoptosis, and senescence64. Importantly, targeting of fortilin may not be an effective strategy to mitigate neointimal proliferation following angioplasty or stent implantation in the atherosclerotic coronary arteries. This is because VSMCs constitute the majority of proliferating cells in the neointima83,84, and the absence of fortilin in MΦ promotes both the transdifferentiation of MΦ (Fig. 5) and the differentiation of MSCs (Fig. 6) into VSMCs, potentially exacerbating neointimal growth.

IMC is a highly multiplexed immunohistochemical analysis method48,49. It uses time-of-flight inductively coupled plasma mass spectrometry, which is capable of detecting dozens of protein markers simultaneously on a single tissue section. IMC achieves this by quantifying the abundance of metal isotopes tagged to antibodies and indexing them against their source location on the tissue section (Fig. 3a). Unlike single-cell RNA sequencing85,86,87, IMC yields single-cell-level, protein-level data for both total and post-translationally modified proteins from the cells in their original locations (i.e., the intima or media). Using IMC, we obtained single-cell and protein-level data for over a dozen cell markers and intracellular proteins within the intima from the same tissue section. We subjected 1050 cells from each group to dimensionality reduction analyses using UMAP methods51 (Cytobank®), with the main goal of grouping MФ (Mac2+ cells), ECs (CD31+ cells), and VSMCs (αSMA+ cells)—the three most abundant cell types in the atherosclerotic intima—into distinct clusters (Fig. 3b). This particular strategy allowed us to perform a robust cell composition assay and to discover the unexpected increase in the VSMC population and decrease in the MΦ population in the intima of fortilinKO-MΦ-HC mice compared to those of fortilinWT-MΦ-HC mice (Fig. 3e, f, h, i, j).

In contrast to the drastic reduction of MΦ seen in the atherosclerotic plaques of fortilinKO-MΦ-HC mice, we did not detect significant differences in circulating myeloid-derived cells (monocytes, eosinophils, or basophils) between fortilinKO-MΦ and fortilinWT-MΦ mice, except for a numerically mild but statistically significant reduction in neutrophils (Fig. S1e). This lack of difference persisted even though fortilin genes were deleted in the cell types in which the LysM promoter was activated (Fig. 1a). This finding might suggest that the biological consequences of fortilin deficiency are context dependent. In other words, the impact of fortilin deficiency may not be uniform across all cell types, as it is also impacted by the microenvironments in which they reside. For example, fortilin-deficient MΦ in the pro-inflammatory, pro-apoptotic (oxLDL-rich) microenvironment of atherosclerosis may undergo higher rates of apoptosis compared to fortilin-deficient monocytes and granulocytes, which circulate in the well-buffered, growth-factor-rich environment of whole blood.

For the mouse model of human atherosclerosis, we exclusively used Ldlr–/–Apobec1–/– (HC) mice, as they represent the most scientifically rigorous model of human familial HC with markedly elevated LDL levels27,31. Although ApoE–/– mice, which are a commonly used mouse model of human atherosclerosis, exhibit total cholesterol levels similar to those of Ldlr–/–Apobec1–/– mice (~560 mg/dL) and develop robust atherosclerosis on normal chow27, most of their cholesterol resides in very low density lipoprotein (VLDL) and chylomicron, not in LDL. In contrast, most of the cholesterol in Ldlr-/-Apobec1-/- mice resides in LDL27. In addition, ApoE deficiency can result in defective phagocytosis of apoptotic cells and increased inflammation88.

In this study, we allowed fortilinKO-MΦ-HC and fortilinWT-MΦ-HC mice to develop atherosclerosis by feeding them for 10 months on a normal chow diet to obtain the most translationally relevant data. Although these mice develop atherosclerosis in an accelerated fashion within 3 months when placed on a high fat diet (HFD), the use of HFD inevitably leads to obesity, metabolic syndrome, alterations in gut microbiota89, and excessive systemic inflammation90, whereas human atherosclerosis typically develops over several decades in a low-grade chronic inflammatory microenvironment.

Additionally, we concluded all of the experiments by 10 months of age in these mice to mitigate the potential impact of senescence on the data. Mice begin to exhibit the senescence phenotype at 10–12 months of age, which was marked by the emergence of cells with high p16Ink4a expression91. Several previous studies demonstrated that cellular senescence in MΦ, VSMCs, and ECs significantly contributes to the progression of atherosclerosis92,93,94. Finally, in this context, the lower expression levels of CD38, which is a dual marker of pro-inflammatory95,96,97 and senescent98 MΦ, in the atherosclerotic tissue of fortilinKO-MΦ-HC mice compared to fortilinWT-MΦ-HC mice likely reflects the fact that fortilin deletion in MΦ reduced pro-inflammatory MΦ, considering that the experiment was concluded within 10 months of age.

We demonstrated that targeting fortilin ameliorated atherosclerosis in mice without reducing serum cholesterol levels (Fig. 1h–l; Fig. S1b–d). Importantly, the MΦ-specific deletion of fortilin per se did not reduce mouse survival (Fig. 1d) or body weight (Fig. S1a), over the long term. Additionally, our previous work showed that constitutional knockdown of fortilin in all tissues in fortilin+/–&HC mice mitigates atherosclerosis without reducing serum cholesterol levels or making the mice ill28. These findings are significant because they suggest that fortilin, and fortilin in particular, can be safely targeted as a novel, non-lipid, molecular target of atherosclerosis therapy. Further validation using a non-rodent model of human atherosclerosis, such as rabbits99,100, would strengthen the evidence that fortilin—particularly fortilin—promotes atherogenesis.

In clinical cardiology, the mainstay of atherosclerosis therapy has been lipid lowering using statins101, proprotein convertase subtilisin/kexin type 9 inhibitors102,103, bempedoic acid104, and ezetimibe105. However, given that nearly 20% of patients admitted to US hospitals under the diagnosis of acute coronary syndrome had LDL levels <70 mg/dL (considered by many to be ideal levels)106, it is unlikely that lipid-lowering therapy totally eliminates atherosclerosis and its complications. Although anti-inflammatory therapies using canakinumab (anti-IL-β1 antibody)107, methotrexate108, and colchicine109 have been evaluated in clinical trials, they were always used with statins and associated with significant side effects, including fatal infections and sepsis107.

As an alternative strategy, small-molecule fortilin inhibitors could effectively ameliorate atherosclerosis and enhance plaque stability by reducing the MФ population and increasing the VSMC population in the intima, suppressing both systemic and local inflammation without altering LDL levels. While these inhibitors can be selectively delivered to MΦ using nanoparticle-based110 or β-1,3-D-glucan particle-based111 systems, they may also exert MΦ-specific anti-atherosclerotic effects without targeted delivery if they preferentially accumulate in MΦ, as observed with pexidartinib112,113,114. The availability of fortilinKO-MΦ-HC mice provides a valuable model to test the hypothesis that small-molecule fortilin inhibitors ameliorate atherosclerosis through selective inhibition of fortilin in MΦ.

Materials and methods

Animal study

We conducted all animal experiments using male mus musculus mice, 8 weeks of age or older, on the C57BL/6 J genetic background, and followed all relevant ethical regulations for animal use. Specifically, qualified vivarium staff and/or study scientists provided cage-side health monitoring and appropriate care throughout the studies to minimize pain and distress, including euthanasia when necessary, in accordance with the Organization for Economic Cooperation and Development (OECD) Humane Endpoints guidance. The pre-determined humane endpoints included rapid weight loss, severe lethargy or unresponsiveness, inability to eat or drink, persistent self-injury or abnormal posture, and labored breathing. Adverse events, whether expected or unexpected, were communicated and discussed among the animal care team and appropriate mitigation strategies were implemented. We euthanized mice first by CO2 inhalation, followed by either exsanguination or a secondary CO2 exposure, consistent with the recommendations of the American Veterinary Medical Association (AVMA) Panel on Euthanasia. The following sections describe individual experiments in detail.

Generation of macrophage (MΦ)-specific fortilin knockout (KO) mice

Generation of fortilinflox/flox mice

We generated fortilinflox/flox mice—in which the fortilin gene was flanked by the LoxP sequence to allow tissue-specific deletion—using the standard homologous recombination technique as previously described30. We described the detailed process for the generation of fortilinflox/flox mice in a previous publication21. Briefly, we first isolated a mouse BAC clone containing the full fortilin gene from the C57BL/6 J ES BAC clone library. We then constructed a fortilin targeting vector containing (a) the 4.8 kilobyte (kb) upstream genomic sequence, (b) the 3.6 kb genomic DNA sequence containing all six fortilin exons (exon 1–6), and (c) the 3.2 kb downstream genomic DNA sequence on the pVBFRTCKR targeting vector backbone21 that already contained (a) two LoxP sequences, (b) a phosphoglycerate kinase promoter-driven neomycin resistance gene flanked by two flippase recognition target (FRT) sequences, and (c) the thymidine kinase cassette.

We verified the integrity of the construct by extensive sequencing, linealized the vector using I-CeuI (R0699S, New England BioLabs, Ipswich, MA, USA), and electroporated it into C57BL6 embryonic stem cells (ESCs). We then identified the ESC clones with successful homologous recombination by subjecting the clones that survived in neomycin-containing medium to polymerase chain reaction (PCR) and Southern blotting (using radioactive DNA probes-1 and -2 after NdeI [R0111S, New England BioLabs] and NsiI [R0127S] digestion, respectively) analyses21. Next, we microinjected two of the mutated ESC lines (B43 and B61) into C57BL6 blastocysts and implanted them in pseudopregnant host mice to obtain chimeric mice. We crossed chimeric mice with C57BL6 mates and tested their offspring for germline transmission using PCR-based methods. Importantly, the resultant fortilinflox/flox mice were fully in the C57BL/6 J genetic background from the beginning. Finally, we crossed fortilinflox/flox mice with a transgenic flippase strain to remove the neomycin resistance gene cassette. Therefore, the fortilinflox/flox mice we used in the current project did not contain the neomycin resistance gene cassette.

Generation of MΦ-specific fortilin KO mice

These mice were then crossed with C57BL/6 J mice overexpressing the Cre transgene under the control of LysM enhancer/promoter (Stock number 004781, Jackson Laboratory, Bar Harbor, ME, USA; backcrossed at least seven times to C57BL/6 J) to generate MΦ-specific deletion of fortilin as previously described115. We found that fortilin expression levels were equally low in both LysM-Cre+/+fortilinflox/flox mice and LysM-Cre+/-fortilinflox/flox mice (data not shown), suggesting that the removal of the knocked-in LoxP-fortilin-LoxP sequence occurred satisfactorily by heterozygous LysM-Cre transgene expression. We therefore performed all subsequent experiments using LysM-Cre+/–fortilinflox/flox (denoted fortilinKO-MΦ hereafter) mice. The generation of fortilinKO-MΦ and fortilinWT-MΦ (LysM-Cre–/–fortilinflox/flox) mice was achieved by mating LysM-Cre+/–fortilinflox/flox and LysM-Cre–/–fortilinflox/flox mice, yielding fortilinKO-MΦ and fortilinWT-MΦ mice in a 1:1 ratio.

PCR-based genotyping procedure

We conducted genotyping of fortilinKO-MΦ and fortilinWT-MΦ mice on tail-derived genomic DNA using standard PCR-based methods. The presence of the LysM-Cre transgene was detected using the following primer sets: 5ʹ-CCCAGAAATGCCAGATTACG-3ʹ (Fig. 1a-2a, M1) and 5ʹ-CTTGGGCTGCCAGAATTTCTC-3ʹ (Fig. 1a-2a, M2). LysM-Cre+/– mice yielded a 700 base pair (bp) amplified fragment, but LysM-Cre–/– mice yielded no amplicons. The presence of the LysM wild-type allele was detected using the following primer sets: 5ʹ-TTACAGTCGGCCAGGCTGAC-3ʹ (Fig. 1a-2b, M3) and 5ʹ-CTTGGGCTGCCAGAATTTCTC-3′ (Fig. 1a-2b, M2). LysM-Cre+/+ mice yielded no amplicon and LysM-Cre–/– or LysM-Cre+/– mice yielded a 350 bp amplicon. The presence of the LoxP-fortilin-LoxP knock-in construct was verified using the following primer sets: 5ʹ-TGGACC CTGACTTTCATCACCTC-3ʹ (Fig. 1a-1, F1) and 5ʹ-GTCATCTAACCTTACCCCAGTAAGC-3ʹ (Fig. 1a–1, F2). Fortilinflox/flox mice yielded a 405 bp fragment and wild-type fortilin mice (fortilinWT/WT mice) yielded a 280 bp fragment.

Survival and body weight analyses

We set aside 28 and 24 fortilinWT-MФ and fortilinKO-MФ male mice, respectively, and placed them on a normal chow diet for survival and body weight analyses. Up to two mice were housed in a cage. Mice were observed daily for appearance, behavior, and survival, and they were weighed every 4 weeks until all mice were dead.

Generation of fortilinKO-MΦLdlr–/–Apobec1–/– (fortilinKO-MФ-HC) and fortilinWT-MΦLdlr–/–Apobec1–/– mice (fortilinWT-MФ-HC)

To increase the serum concentration of low-density lipoprotein (LDL) to an atherosclerogenic level while consuming normal chow, we crossbred fortilinKO-MΦ and fortilinWT-MΦ mice with Ldlr–/–Apobec1–/–mice. Most of the cholesterol in these mice resides in LDL, not in chylomicrons or very-low-density lipoprotein (VLDL) as is the case for ApoE–/– mice27,31. We performed genotyping of Ldlr–/–Apobec1–/– mice on tail-derived genomic DNA using standard PCR-based methods. The status of the Apobec1 allele was assessed using the following primer sets: 5ʹ-TGAGTGAGTGGTGGTGGTAAAG-3ʹ and 5ʹ-CGAAATTCCTCCAGCAGTAAC-3ʹ. Apobec1+/+ and Apobec1+/− mice yielded a 475 bp amplified fragment, whereas Apobec1−/− mice yielded no fragments. The status of the Ldlr allele was assessed using the following primer sets: 5ʹ-ACCCCAAGACGTGCTCCCAGGATGA-3ʹ and 5ʹ-CGCAGTGCTCCTCATCTGACTTGT-3ʹ. Ldlr+/+ mice yielded a 383 bp fragment, whereas Ldlr−/− mice yielded no fragments. We refer to fortilinKO-MΦLdlr–/–Apobec1-/- and fortilinWT-MΦLdlr–/–Apobec1–/– mice as fortilinKO-MФ-HC (HC, hypercholesterolemic) and fortilinWT-MФ-HC mice in this manuscript for the sake of simplicity.

Quantification of mRNA by real-time quantitative reverse transcription PCR (RT-qPCR)

We previously described the methods of RT-qPCR16. For RNA analysis of mouse MΦ, we harvested peritoneal MΦ after inducing them in thioglycolate in fortilinWT-MΦ-HC and fortilinKO-MΦ-HC mice, as previously described116. We isolated RNA from the kidney, liver, and lung of fortilinWT-MΦ-HC and fortilinKO-MΦ-HC mice using the GeneJet™ RNA Purification Kit (Catalog #: K0731, Thermo Scientific, Waltham, MA, USA), according to the manufacturer’s instructions. We performed RT-qPCR in quadruplicate with 50 or 100 ng of total RNA, using either the TaqMan® RT-PCR Kit (ABI at Life Technologies, Grant Island, NY, USA) or the QuantiNova Probe RT-PCR Kit (Catalog #: 208352, Qiagen, Germantown, MD, USA), on a QuantStudio3 system (Applied Biosystems, Foster City, CA, USA). We used the following primer and probe sets (Integrated DNA Technologies, Coralville, IO, USA):

  • Mouse Fortilin—Forward: 5ʹ- TCCGACATCTACAAGATCCGG-3ʹ, Reverse: 5ʹ- ATCTTGCCCTCCACCTCCA-3ʹ, Probe 5ʹ-FAM- AGATCGCGG/ZEN/ACGGGCTGTGC-IAbkFQ-3′ where FAM = carboxyfluorescein, IAbkFQ = Iowa Black FQ, and ZEN™ = an internal quencher to enhance the quenching activity of the 3′ quencher Iowa Black FQ;

  • Mouse 18S ribosomal RNA (rRNA)—Forward: 5ʹ-GCCGCTAGAGGTGAAATTCT-3ʹ, Reverse: 5ʹ-TCGGAACTACGACGGTATCT-3ʹ, Probe: 5ʹ-JOEN-ACCAGAGCG/ZEN/AAA GCATTTGCCAAG-IAbkFQ-3ʹ where JOEN = 6-carboxy-4′,5′-dichloro-2′,7′- dimethoxyfluorescein;

  • Mouse Col1a1—Forward: 5ʹ-GAAACCCGAGGTATGCTTGA-3ʹ, Reverse: 5ʹ-GTTGGGACAGTCCAGTTCTT-3ʹ, Probe: 5ʹ-FAM-GTGCGATGACGTGCAATGCA-3IABkFQ-3ʹ

  • Mouse Col3a1—Forward: 5ʹ-CCCTTCATCCCACTCTTATT-3ʹ, Reverse: 5ʹ- GATCCTGAGTCACAGACACATATT-3ʹ, Probe: 5ʹ-FAM-TCATCTACG/ZEN/TTGGACTGCTGTGCC-IABkFQ-3ʹ

  • Mouse Col4a1— Forward: 5ʹ-GCCAAGTGTGCATGATGAGAA-3ʹ, Reverse: 5ʹ-TACAATGGGAGGGAGAAGAG-3ʹ, Probe: 5ʹ-FAM-AACTATGAT/ZEN/GCTCGCCTCTGCCAC-IABkFQ-3ʹ

  • Human 18S rRNA—Forward: 5ʹ- CTGAGAAACGGCTACCACATC-3ʹ, Reverse: 5ʹ-GCCTCGAAAGAGTCCTGTATTG-3ʹ, Probe 5ʹ-FAM-AAATTACCCACTCCCGACCCGG-IAbkFQ-3ʹ;

  • Human FORTILIN—Forward: 5ʹ-ATGACTCGCTCATTGGTGGAA-3ʹ, Reverse: 5ʹ-TGCTTTCGGTACCTTCGCCC-3ʹ, Probe 5ʹ-FAM-TGCCTCCGC/ZEN/TGAAGGCCC-IAbkFQ-3ʹ;

  • Human αSMA—Forward: 5ʹ-GAGGTATCCTGACCCTGAAGTA-3ʹ, Reverse: 5ʹ-AAGCTCGTTGTAGAAGGTGTG-3ʹ, Probe 5ʹ-FAM/TATCGAGCA/ZEN/CGGCATCATCACCAA/IABkFQ/-3ʹ;

  • Human SM22α—Forward: 5ʹ-TGGAGATCCCAACTGGTTTATG-3ʹ, Reverse: 5ʹ-CATCCCAGACCCTCACTTTATC-3ʹ, Probe 5ʹ-FAM-CCTTAGAAC/ZEN/AAGCCACCTCCCACC/IABkFQ-3ʹ;

  • Human CNN1—Forward: 5′-GTCAGCCGAGGTTAAGAACAA-3′, Reverse: 5′-CTTCAGGATCTCCCACACTTTC-3′, Probe 5′-FAM-CCCGGCCTG/ZEN/ACAAAGAAATTGGG-IAbkFQ-3′;

  • Human MAC2—Forward: 5′-CCTCGCATGCTGATAACAATTC-3′, Reverse: 5′-CTCATTGAAGCGTGGGTTAAAG-3′, Probe 5′-FAM-CGGTGAAGC/ZEN/CCAATGCAAACAGAA-IAbkFQ-3′;

  • Human CD68—Forward: 5′-ACGCAACTGGCTCAAAGA-3′, Reverse: 5′-TCCCAAAGTGCTGGGATTAC-3′, Probe 5′-FAM-AAAGAAAGC/ZEN/CGGGCATGACGG-IAbkFQ-3′;

  • Human CD45—Forward: 5′-CGGCTGACTTCCAGATATGAC-3′, Reverse: 5′-GCTTTGCCCTGTCACAAATAC-3′, Probe 5′-FAM-TCCAGAAAG/ZEN/GCAAAGCCAAATGCC-IAbkFQ-3′;

  • Human CD105—Forward: 5′-GCAGGTGTCAGCAAGTATGA-3′, Reverse: 5′-GAAAGAGAGGCTGTCCATGTT-3′, Probe 5′-FAM-TCAGCAATG/ZEN/AGGCGGTGGTCAATA-IAbkFQ-3′;

  • Human CD34—Forward: 5′-TAGCCAAGTCTGCCAACTATTC-3′, Reverse: 5′-CCAACATACCACCCTCCATTT-3′, Probe 5′-FAM-AAAGGCAGA/ZEN/CCCGAATGTACCAGG-IAbkFQ-3′;

  • Human CD14—Forward: 5′-CTCAGAGGTTCGGAAGACTTATC-3′, Reverse: 5′-TTCATCGTCCAGCTCACAAG-3′, Probe 5′-FAM-CAGCAGCAG/ZEN/CAACAAGCAGGAC-IAbkFQ-3′;

  • Human CD73—Forward: 5′-ACGTTCTGGAACCACGTATC-3′, Reverse: 5′-CAGGTTCTCCCAGGTAATTGT-3′, Probe 5′-FAM-TTGTTGCGT/ZEN/TCATCAATGGGCGAC-IAbkFQ-3′;

  • Human CD90—Forward: 5′-CGGAAAGGAGAAGAGAAGAACA-3′, Reverse: 5′-TCCCAAAGTGGTGGGATTAC-3′, Probe 5′-FAM-CCTCACAAC/ZEN/GCAAACCTACCCAGA-IAbkFQ-3′;

We used the 2–ΔΔCT method to calculate the expression levels of a gene in question relative to the 18S rRNA levels in the sample.

Protein analyses using western blots

We performed SDS-PAGE and western blot analyses as described previously9,14,15,117,118. All antibodies were used with appropriate IRDye680LT- or IRDye800CW-conjugated secondary antibodies (LI-COR, Lincoln, NE, USA). The signal intensities of proteins bands were quantified using either the Odyssey Infrared Imaging System (LI-COR) or ChemiDoc MP System (Bio-Rad, Hercules, CA, USA). When appropriate (Figs. S4a, 5g, S6e), we assessed total protein loading by adding 2,2,2-trichloroethanol (TCE) to a polyacrylamide gel at the final concentration of 0.5% (v/v) before polymerization. After standard SDS-PAGE, the gel was ultraviolet (UV)-irradiated on the Bio-Rad ChemiDoc MP Imaging System for 2 min and the image of proteins on the gel was electronically captured119. We also used glyceraldehyde 3-phosphate dehydrogenase (GAPDH) as the loading control. The following primary antibodies were used:

  • Rabbit anti-fortilin (MBL International, Woburn, MA, USA; Catalog #: PM017; 1:1,000 dilution; used for the experiments depicted in Fig. 1c);

  • Rabbit anti-fortilin (Abcam, Waltham, MA, USA; Clone EPR5540, ab133568; 1:2,000 dilution; Figs. 5g, S4a);

  • Mouse anti-GAPDH (Fitzgerald, Acton, MA, USA; Clone: 10R-G109a; 1:10,000 dilution; Fig. 1c); mouse anti-GAPDH (Santa Cruz Biotechnology, Inc. Dallas, TX, USA; Clone: 6C5; Catalog #: sc-32233; 1:1,000 dilution; Figs. 5gS6e);

  • Rabbit anti-human calponin-1 (CNN1) mAb (Cell Signaling Technology (CST), Danvers, MA, USA; Clone D8L2T, Catalog #: 17819; 1:1,000 dilution; Fig. 5g);

  • Recombinant rabbit anti-human α-smooth muscle actin (SMA) antibody (Abcam, clone EPR5368, Catalog #: ab124964; 1:1,000 dilution; Fig. 5g);

  • Rabbit anti-human SM22α (Transgelin/TAGLN) polyclonal Ab (CST, Catalog #: 40471; 1:1,000 dilution; Fig. 5g);

  • Rabbit anti-human TGF-β1 polyclonal Ab (Abcam, Catalog #: ab92486; 1:1,000 dilution; Figs. 5g, S6e);

  • Rabbit anti-Mac2 (Galectin-3/LGALS3) mAb (CST, Clone: D4I2R, Catalog #: 8785; 1:1,000 dilution; Fig. 5g);

  • Rabbit anti-human CD68 mAb MultiMab™(CST, multiple clones, Catalog #: 86985; 1:1,000 dilution; Fig. 5g).

For the quantification of CD36 expression in THP1KO-fortilin and THP1WT-fortilin cells, we used JESS™, a highly quantitative capillary-based western blot system (ProteinSimple®, San Jose, CA, USA)24. Briefly, we evaluated protein loading using the Luminol-Peroxide mix (ProteinSimple®, Catalog #: 043-311 and 043-379) on the total protein detection module of the system. We calculated CD36 expression indices (in arbitrary unit [A.U.]) by dividing the area under the curve of CD36 by the total proteins loaded in the same capillary using Compass Simple Western™ software (version 6.3.0.)24. We used the following primary and secondary antibodies:

  • Primary antibody: Rabbit anti-CD36 polyclonal antibody (Novus, St. Louis, MO, USA; Catalog #: NB400-145; 1:50 dilution)

  • Secondary antibody: anti-rabbit secondary to horseradish peroxidase (HRP) mAb (ProteinSimple®, Catalog #: 042-206; 1:1 dilution).

Quantification of atherosclerosis

We quantified the degree and extent of atherosclerosis using both en face and cross-sectional planimetry assays, as previously described28,120,121. Before starting the experiment, we calculated that at least 11 mice per group would be required for the en face assays. This estimate was based on a one-sample Z-test assuming α < 0.05 (type I error), power >0.95 (type II error), a standard deviation (s.d., σ) of 5.20, as observed in our previous published atherosclerosis studies28 (Minitab®, State College, Pennsylvania, USA). In that study, the absolute difference (Δ) in Oil-Red-O (ORO)-positive atherosclerotic area between control and study groups was 9.19%28. To be conservative, we powered the study to detect a Δ of 6% and included an estimated attrition rate of ~10% over the study period. In the actual experiment, we used 17 mice per group. We assigned animals to one of the two groups, based on their genotypes; therefore, randomization was not performed. We housed 8-week-old fortilinWT-MФ-HC (N = 17) and fortilinKO-MФ-HC (N = 17) mice individually in an air-conditioned room with a 12:12 h light-dark cycle with free access to normal chow diet (Lab Diet, St. Louis, MO, USA) and water until they were euthanized at 10 months of age. All animals completed the study and were included in the analyses. Animals were weighed at the time of euthanasia. After euthanasia, we performed cardiocentesis to obtain whole blood. A portion of the blood was subjected to automated complete blood count (CBC) with differential, while sera from the blood was subjected to (i) lipid profile assays at the Mouse Metabolic Phenotype Center at the University of Cincinnati28,120 and (ii) cytokine assays using the Milliplex® (EMD MilliporeSigma, Burlington, MA, USA) and Luminex™ 200 (Austin, TX, USA) systems122. After obtaining the blood, we harvested the entire aorta en bloc from the left ventricular (LV) outflow tract to the aortic valve to the iliac bifurcation and divided it into two portions: (a) the proximal portion including the left ventricle and the first 1 mm of the ascending aorta and (b) the remainder of the ascending aorta, aortic arch, descending aorta, and proximal iliac arteries.

Cross-sectional atherosclerosis analysis

The first portion was snap-frozen in OCT compound (Tissue-Tek, Sakura-Finetech, Torrance, CA, USA) and subjected to cryosectioning. The sections were cut perpendicular to the axis of the aorta from the left ventricular outflow tract toward the ascending aorta with frequent monitoring of the anatomy using hematoxylin and eosin (H&E) staining and microscopy. The first section was collected and mounted onto a glass slide as soon as the three aortic cusps became clearly visible. We mounted two 7 µm thick sections per slide and prepared 20 slides per mouse. The first slide from each mouse was stained with H&E and subjected to planimetric analysis using ImageJ (NIH, Bethesda, MD, USA), and data were expressed in µm2. After cross-sectional atherosclerosis analysis was completed, the tissue samples were thawed and fixed in 4% paraformaldehyde (PFA) and embedded in paraffin blocks for imaging mass cytometry (IMC). A tissue microarray containing all samples was then generated and subjected to IMC as described below.

En face atherosclerosis analysis

The latter part of the aortae were cleaned of extravascular tissue and fat under a stereomicroscope, opened, and pinned flat on a white surface. We fixed the samples with 10% (v/v) buffered formalin solution overnight, stained them with freshly prepared and filtered Oil-red-O (ORO) solution for 1 h, rinsed them twice with 78% methanol, mounted and dried them on glass slides, and scanned them in the tagged image file (TIFF) format using the ScanScope Slide Scanning System (Nikon, Melville, NY, USA). The planimetry of the entire surface area and ORO positive atherosclerotic lesion areas was performed on the scanned images using Sigma Scan Pro software (SYSTAT Software, San Jose, CA, USA). The atherosclerosis index was calculated by dividing the ORO positive area by the entire surface area, and results were expressed in percentages.

Blood chemistry and CBC

We sampled whole blood by cardiocentesis using a 25-gauge needle immediately after euthanasia by CO2. Each sample was transferred into a Microtainer® tube containing lithium heparin (BD Biosciences, Franklin Lakes, NJ, USA) by removing the needle from the syringe, pouring the blood into the tube, and mixing it thoroughly with the lithium heparin. CBC with differential was obtained using the HEMAVET 950FS Hematology System (Drew Scientific, Dallas, TX, USA).

Lipid and lipoprotein assays

The concentrations of total cholesterol, triglycerides, phospholipids, and non-esterified fatty acids were determined using standard enzymatic methods as described previously28,120, while size fractionation of lipoprotein was achieved using fast-performance liquid chromatography. Both assays were performed at the Mouse Metabolic Phenotype Center at the University of Cincinnati28,120.

Serum cytokine assays

The mouse serum cytokines and chemokines were simultaneously measured as described previously122 and using a MILLIPLEX® MAP Mouse Cytokine/Chemokine Magnetic Bead Panel according to manufacturer’s instructions (Catalog#: MCYTOMAG-70K, MilliporeSigma). Briefly, the diluted serum samples, standards, and controls were mixed with assay buffer and premixed 32-plex beads in a 96-well plate. The plate was then incubated at 4 °C overnight with shaking. The well contents were removed, and the plate was washed twice with wash buffer. The mixture of detection antibodies was then added to each well and the mixture was incubated for 1 h at room temperature, followed by the addition of streptavidin-phycoerythrin. After a 30 min incubation, the plate was washed twice and sheath fluid was added to each well prior to analysis using the Luminex 200™ System (Luminex-DiaSorin, Saluggia, Italy) (Fig. 2c–e; Fig. S2a, b). TGF-β1 and β2 concentrations in the mouse sera were measured in the same way using a MILLIPLEX® TGFβ Magnetic Beads 3 Plex Kit (Catalog #: TGFBMAG-64K-03, MilliporeSigma) (Fig. 2f, g). Cytokines and chemokines contained in the conditioned media (CM) from THP1KO-fortilin and THPWT-fortilin human monocyte-macrophage cell lines were analyzed using a MILLIPLEX® MAP Human Cytokine/Chemokine Magnetic Bead Panel according to manufacturer’s instructions (Catalog #: HSTCMAG28SPMX13, MilliporeSigma) and as described above (Fig. S5a–m).

Enzyme-linked immunosorbent assay (ELISA)

We quantified human TGF-β1 in the CM of THP1WT-fortilin and THP1KO-fortilin cells (Fig. 6g) using a TGF-β1 ELISA kit (Invitrogen Thermo Fisher, Waltham, MA, USA; Catalog #: BMS249-4) as described previously119 and following the manufacturer’s instructions.

IMC

Tissue preparation

The workflow of IMC is shown in Fig. 3a, b and in a previously published report123. After sacrifice, we embedded the very proximal portion of the ascending aorta, including the left ventricular outflow tract, in the OCT compound and snap-froze it on dry ice before subjecting it to cryosectioning and cross-sectional atherosclerosis assays. Subsequently, we thawed the tissue samples, fixed them in 4% PFA, and embedded them in paraffin blocks to generate a formalin-fixed paraffin embedded (FFPE)-tissue microarray (TMA) for IMC.

IMC antibody testing, conjugation, validation, and titration

We tested all antibodies listed below using immunofluorescence on samples of mouse spleen, liver, heart, and atherosclerotic aorta. We selected antibodies that yielded specific and high-intensity signals in a pattern that is appropriate for the given antigen and conjugated them to their respective metals using the MaxPar X8 Multimetal Labeling Kit (Fluidigm, San Francisco, CA, USA). Next, we tested these metal-conjugated antibodies in IMC using the mouse tissues and confirmed that each antibody continued to generate specific signals. We also generated an FFPE TMA that included all available mouse aorta samples. Finally, we subjected the FFPE TMA to staining with all metal-conjugated antibodies and visually examined each channel to ensure that the dilution used in the staining produced specific signals with the appropriate signal-to-noise ratio. In some cases, we increased the dilution of the antibody that exhibited a significant signal spillover to the adjacent channels. We repeated the process until we obtained strong and specific signals with an acceptable signal spillover from the adjacent channels. We used the following metal-conjugated antibodies for tissue staining (conjugated metal is indicated in the parenthesis; *, pre-made and validated at the Single Cell Imaging and Mass Cytometry Analysis Platform at McGill University; **, custom conjugated):

  • anti-(α-)Ly6G (141Pr) Ab*, Clone 1A8, Abcam (Catalog #: ab210204);

  • α-Ki67 (143Nd) Ab*, Clone SP6, Abcam (Catalog #: ab16667);

  • α-B220 (144Nd) Ab*, Clone RA3-6B2, Abcam (Catalog #: ab233273);

  • α-pSTAT (145Nd) Ab**, Clone 15H13L67, Invitrogen (Catalog #: 700349);

  • α-CD31 (146Nd) Ab*, Clone RM0032-1D12, Abcam (Catalog #: ab56299);

  • α-CD45 (147Sm) Ab*, Clone D3F8Q, CST (Catalog #: 98819);

  • α-p53 (148Nd) Ab**, Clone EPR20416-120, Abcam (Catalog #: ab246550);

  • α-CD11b (149Sm) Ab*, Clone EPR1344, Abcam (Catalog #: ab209970);

  • α-CD19 (150Nd) Ab**, Clone EPR23174-145, Abcam (Catalog #: ab245235);

  • α-CD3e (152Sm) Ab**, Clone CAL57, Abcam (Catalog #: ab237721);

  • α-CD8α (153Eu) Ab*, Clone D4W2Z, CST (Catalog #: 60168)

  • α-CD11c (154Sm) Ab*, Clone D1V9Y, CST (Catalog #: 39143)

  • α-TGF-β1 (155Gd) Ab**, Clone EPR21143, Abcam (Catalog #: ab229856);

  • α-FoxP3 (158Gd) Ab*, Clone D6O8R, CST (Catalog #: 72338);

  • α-F4/80 (159Tb) Ab*, Clone BM8, Abcam (Catalog #: ab16911);

  • α-fortilin (161Dy) Ab**, Clone EPR5540, Abcam (Catalog #: ab133568);

  • α-p-Smad3 (163Dy) Ab**, (Clone EP823Y), Abcam (Catalog #: ab52903);

  • αiNOS (164Dy) Ab*, Polyclonal, Abcam (Catalog #: ab15323);

  • α-CD68 (165Ho) Ab**, Clone EPR23917-164, Abcam (Catalog #: ab283667);

  • α-Mac2 (167Er) Ab**, Clone M3/38, Cedarlane, Burlington, Ontario, Canada (Catalog #: CL8942AP);

  • α-CD206 (169Tm) Ab*, Polyclonal, Abcam (Catalog #: ab64693);

  • α-CD3 (170Er) Ab*, Clone Cd3-12, Abcam (Catalog #: Ab255972);

  • α-CD38 (171Yb) Ab**, Clone EPR21079, Abcam (Catalog #: ab216343);

  • α-activated caspase 3 (172Yb) Ab*, Clone 5A1E, CST (Catalog #: 9664);

  • α-MHC-II (174Yb) Ab*, Clone 28148, Abcam (Catalog #: ab25228);

  • α-αSMA (175Lu) Ab, Clone 1A4, Abcam (Catalog #: ab7817).

Tissue staining

For the final staining, we generated two back-to-back sections from the FFPE TMA within a week of the actual staining. One was subjected to standard H&E staining to determine the regions of interest (ROI), while the other one underwent IMC metal labeling as previously described123. For metal labeling, we subjected the FFPE TMA to deparaffinization and heat-mediated antigen retrieval on the Ventana Discovery Ultra auto-stainer platform (Roche Diagnostics, Indianapolis, IN, USA) using EZ Prep solution (Roche Diagnostic, Catalog #: 950-102) and ULTRA Cell Conditioning 1 solution (Roche Diagnostic, Catalog #: 950-224), respectively. After incubating the sample at room temperature in Dako Serum-free Protein Block solution (Agilent, Santa Clara, CA, USA; Catalog #: X090930-2) for 45 min, we incubated it at 4 °C overnight with a cocktail of the 26 primary antibodies, all of which were conjugated to their respective metals and added to Dako Antibody Diluent solution at the optimized dilutions. The next day, we counterstained the sample with Cell-ID Intercalator-Iridium (Fluidigm), rinsed it in distilled water, air-dried it, and stored it at 4 °C until image acquisition.

Selection of ROI

Using H&E staining, we determined the ROI containing the lumen, intima, and media of each aorta section, which we used to set the ROI coordinates for IMC.

Image acquisition

First, we obtained optical images of the slides using Hyperion software and, based on the previously selected ROI on the H&E slides, selected the areas for UV laser ablation. Using the established protocol at the McGill University Goodman Cancer Institute Single Cell Imaging and Mass Cytometry Analysis Platform (Montreal, Canada), we acquired images using the Hyperion Imaging System (Fluidigm) by inserting the stained slide into the Hyperion laser ablation chamber and allowing the system to generate UV laser pulses at a frequency of 200 Hz, which were directed to the pre-selected ROI124. Each UV laser pulse ablated a 1 µm2 area of tissue within the ROI that was located at a certain coordinate. The pulse evaporated and ionized the area, and the fume was vacuum carried to a Helios time-of-flight mass cytometer (Fluidigm), where the amounts of metal-tagged antibodies in the fume were quantified and the signals were assigned to the corresponding coordinate.

IMC data processing, image segmentation, pixel classification, and cell segmentation

We used the Fluidigm/Standard BioTools, Inc. MCD™ viewer to convert text format files generated during data acquisition into tiff image files. We then used CellProfiler (Broad Institute of the Massachusetts Institute of Technology, Boston, MA, USA)125 to identify individual nuclei, define cell borders, and generate cell masks using the Steinbock protocol50. Focusing only on the cells contained in the intima, we determined the median signal intensity of each antigen for the cell and exported the results in two comma-separated-values (CSV) tables—one for cells from KO mice and the other for cells from WT mice. Each row of the CSV tables represented a single cell, and the columns contained the information specific to the cell, including the signal intensities of various antigens divided by the surface area of that cell. Although the tissue samples were stained by 26 different metal-conjugated antibodies, we found that the signal intensities were adequate only for CD31, CD45, CD11b, fortilin, αSMA, Mac2, F4-80, CD11c, CD3, CD19, CD68, CD206, CD38, and B220. One stained sample (M387-1, WT) exhibited severe staining irregularity and was removed from the analysis. In two samples (M228-1, KO; M396-2, KO), part of the atherosclerotic intima detached from the rest of it, and we removed them from the analysis.

Cellularity analysis

We determined the number of nuclei within the atherosclerotic intima of each animal and divided it by the cross-sectional area of the intima to calculate the cellularity index (cells/mm2).

Single cell dimensionality reduction analysis

To determine the composition of the atherosclerotic intima, we first uploaded the CVS tables—Steinbock-WT and Steinbock-KO—to the Cytobank server (Beckman-Coulter, Indianapolis, IN, USA) and converted them to flow cytometry standard (fcs) files. To visualize the three predominant cell types of the atherosclerotic intima (MФ, VSMCs, and ECs), we performed a dimensionality reduction analysis on the pooled WT and KO intimal cells (1050 cells each) using the Uniform Manifold Approximation and Projection (UMAP) algorithm with the parameters set as follows: the number of neighboring sample points = 100; the effective minimum distance between embedded points = 0.6; UMAP channels = αSMA (VSMCs), Mac2 (MФ), and CD31 (ECs); and event sampling = equal (1050 cells for WT and KO each). We visualized the data using “En Fuego” as a plot color scheme and stacked dots as a dot plotting method with the dot size of 2. We then calculated the percentage of ECs (CD31+), MФ (Mac2+), and VSMCs (αSMA+) for pooled WT and KO intimal cells using Gating Editor of the Cytobank platform.

Cell profiling analysis

In addition to the above analysis of the pooled cells, we also performed per-animal analyses. In this assay, we summed all signals within cells and divided them by the area of the intima to calculate the expression index (E.I.), as shown in the following equation:

$$E.I.\left(A.U.\right)=\sum \left(S1+S2...{Sn}\right)\div\,A$$

where S1 represents the signal intensity of a certain antigen in cell number one; A is the cross-sectional area of the intima that contains cell number one through number n; and all cells from an E.I. come from a single animal.

Immunofluorescence staining

We performed four-color immunofluorescence staining to visualize MΦ, VSMCs, and ECs in the atherosclerotic intima and to validate the IMC findings. Formalin-fixed, paraffin-embedded (FFPE) aortic tissue slides from male fortilinWT-MΦ-HC and fortilinKO-MΦ-HC mice (age 29–34 weeks, n = 5 per group) were first baked at 60°C for 1 h, followed by deparaffinization in xylene. Antigen retrieval was performed by incubating the slides in ULTRA Cell Conditioning 1 (CC1) solution (Roche Diagnostic, Catalog #: 950-224) diluted 1:1 in ddH2O, at 95°C for 36 min in the EZ-Retriever® tissue-staining microwave (BioGenex, Fremont, CA, USA), then allowing the slides cool to room temperature. We then blocked non-specific binding with Dako Serum-free Protein Block (Agilent, Santa Clara, CA, USA; Catalog #: X090930-2) for 30 min at room temperature. Tissues were incubated overnight at 4°C in a humidified chamber with the following mAbs, each diluted in Dako Antibody Diluent (Agilent, Catalog #: S202230-2):

  1. (1)

    α-Mac2 mAb conjugated to Alexa Fluor 647 (Clone M/38; BioLegend, Catalog #: 125408; 1:100 dilution)—visualized using a red laser (638 nm) and Cy5 filter, assigned magenta.

  2. (2)

    α-αSMA mAb conjugated to Alexa Fluor 488 (Clone 1A4; BioLegend, Catalog #: 614854; 1:100 dilution)—visualized using a green laser (488 nm) and FITC filter, assigned green.

  3. (3)

    α-CD31 mAb conjugated to Alexa Fluor 555 (Clone D8V9E; Cell Signaling Technology, Catalog #: 89266; 1:100 dilution)—visualized using a yellow laser (561 nm) and TRITC filter, assigned red.

  4. (4)

    4’,6-diamidino-2-phenylindole (DAPI; Invitrogen, Catalog #: 62248; 1: 1,000 dilution)—visualized using a UV laser (405 nm) and DAPI filter, assigned blue.

The following day, we washed the slides in PBS, stained nuclei with DAPI, washed them again in PBS, and mounted the coverslips using ProLong™ Gold Antifade Mountant (Thermo Fisher Scientific, Catalog #: P36930). We visualized and captured the fluorescence signals using a Nikon A1R confocal microscope controlled by NIS-Elements AR software (version 5.11.01, Nikon, Tokyo, Japan) employing appropriate lasers and filter sets for each fluorophore as described above. We analyzed the image in ImageJ (v1.54 f NIH, Bethesda, MD, USA)126 to quantify the expression levels of Mac2, αSMA, and CD31 within the atherosclerotic intima defined as the region of interest (ROI). We calculated the expression index for each cell marker by dividing the total area of pixels with signal intensity above the background threshold by the total ROI area, multiplying by 100, and expressing the result in arbitrary units (A.U.).

Cell culture and cell lines

Mouse peritoneal MΦ

We induced peritoneal MΦ by intraperitoneally injecting 1 mL of 3% thioglycollate (Fluka-MilliporeSigma, Catalog #: B2551, Lot #: BCBL8096V) into fortilinWT-MΦ (Fig. 4a, S4c), fortilinKO-MΦ (Fig. 4a, S4c), fortilinWT-MΦ-HC (Fig. 4d, e), or fortilinKO-MΦ-HC (Fig. 4d, e) mice, incubating them for 4 days, sacrificing them, and collecting the cells from the abdominal cavity using a Pasteur pipette under sterile conditions. We seeded the cells on cell culture plates in high-glucose Dulbecco’s Modified Eagles Medium (DMEM) supplemented with 10% heat-inactivated fetal bovine serum (FBS, MilliporeSigma, Catalog #: F4135), 1 x GlutaMAX™ (Gibco, Waltham, MA, USA; Catalog #: 35050079), and 1% penicillin-streptomycin in a humidified incubation chamber with 5% CO2. We allowed the cells to attach to the plastic plate for 4 h, gently washed off non-adherent cells with phosphate buffered saline (PBS) and cultured them in the same DMEM for the oxLDL-induced DNA fragmentation assay, BrdU assay, and migration assay.

Mouse bone marrow (BM) derived macrophages (BMDMΦ)

We generated BMDMФ from the BM of fortilinWT-MΦ and fortilinKO-MΦ mice as previously described127. Briefly, we flushed out BM from the femur and tibia bones from the 6–8-week-old mice using cold PBS with 2% FBS. After passing BM cells through a 21-gauge needle several times and through a 70 µm cell strainer, we added three volumes of 0.8% NH4Cl solution (Stem Cell Technology, Vancouver, BC, Canada), incubated the mixture on ice for 10 min, and spun down the cells by centrifugation. We resuspended and seeded the cells in the BDBMФ growth medium consisting of Iscove’s Modified Dulbecco’s Medium, 10% FBS, and 10 ng/ml MΦ colony stimulating factor (M-CSF). We changed the medium using fresh BMDMФ growth medium on day 3. On day 7, we performed flow cytometry on the cells to ensure that they were expressing both CD11b and F4/80 on their surface. We used the cells to perform the phagocytosis assay. We maintained these cell lines in DMEM supplemented with 10% FBS, 1 x GlutaMAX™, and 1% penicillin-streptomycin in a humidified incubation chamber with 5% CO2.

Fortilin-deficient THP1 cells and their control (THP1KO-fortilin and THP1WT-fortilin)

THP1 cells whose fortilin was knocked out (THP1KO-fortilin) by targeting exon 3 of the fortilin gene using the standard CRISPR-Cas9 system58,128 and the exon-targeting single guide RNA (TTTCGGTACCTTCGCCCTCG) were obtained from Synthego (Redwood City, CA, USA). The final clones were characterized using indel analysis, western blot analysis, and immunofluorescence staining. For the indel analysis, purified genomic DNA from THP1KO-fortilin clonal and homozygous KO cells were amplified with PCR using the following primers flanking the target cut site:

  • Forward PCR Primer: 5’–TATACCCACTGCGAAAGAACCT–3’;

  • Reverse PCR Primer: 5’–CGTGAACTATTGGCGTGGAAG–3’

The gel-purified amplicons were subjected to Sanger sequencing using the forward PCR primer. Sequences around the target cut site were then evaluated using the ICE CRISPR Analysis Tool (Synthego) to show the insertion of one nucleotide ( + 1) at the site. A mock-transfected pool of THP1 cells was provided by Synthego and used as the control (THP1WT-fortilin). Both THP1WT-fortilin and THP1KO-fortilin human monocyte-MΦ cells were cultured in Roswell Park Memorial Institute (RPMI) 1640 medium supplemented with 1x GlutaMAX™, 1.0% penicillin-streptomycin, and 10% FBS. For all experiments described in this manuscript, these cells were differentiated fully to MΦ by incubating them in the above medium with 5 ng/mL phorbol 12-myristate-13-acetate (PMA, Sigma, Catalog #: 8139) for 48 h, as described previously129.

Human umbilical cord-derived mesenchymal stem cells (UCDMSCs)

UCDMSCs were obtained from the ATCC (Manassas, VA, USA; Catalog #: PCS-500-010) and cultured in the complete mesenchymal stem cell medium (“complete MSC medium”)—consisting of Mesenchymal Stem Cell Basal Medium (ATCC, PCS-500-030) supplemented with the Mesenchymal Stem Cell Growth Kit (ATCC, Catalog#: PCS-500-040), resulting in final concentrations of 2% FBS, 5 ng/mL human recombinant (rh) FGF basic, 5 ng/mL rh FGF acidic, 5 ng/mL rh epidermal growth factor, 2.4 mM L-alanyl-L-glutamine, and 100 units/mL penicillin-streptomycin—in flasks coated with 0.04% gelatin (MilliporeSigma, Catalog #: G1393)130. UCDMSCs were passed every other day at a ratio of 1:2. For all assays, we used cells below passage 15.

Immunocytochemistry

For immunocytochemical characterization of THP1WT-fortilin and THP1KO-fortilin (Fig. S4b), we seeded the cells into 4-chamber slides (Thermo Fisher Scientific Nunc Lab-Tek II, Catalog #: 154526PK), treated them with PMA (100 ng/mL) for 48 h, and fixed them with 4% PFA for 20 min. The cells were permeabilized with 0.1% Triton-X-100 in PBS for 15 min and blocked using 10% goat serum in PBS with Tween for 1 h. Rabbit anti-fortilin antibody (1:500 dilution, Abcam, Catalog #: ab133568) was incubated with cells overnight at 4°C. After incubation with the primary antibody, Alexa Fluor 488 goat anti-rabbit IgG (F + L) (1:2000 dilution, Invitrogen, Catalog#: 2179202) was applied for 1 h. The nucleus was stained with 4’,6-diamidino-2-phenylindole (DAPI). Imaging was performed using a Nikon A1R confocal microscope controlled by NIS-Elements AR image acquisition software (version 5.11.01, Nikon, Tokyo, Japan).

DNA fragmentation assay

The amount of DNA fragmentation, which is a marker of apoptosis, in peritoneal MΦ (Fig. 4a) and THP1WT-fortilin and THP1KO-fortilin (Fig. 4b) was quantified using an ELISA kit (Cell Death Detection ELISA PLUS Cat # 11774425001, Roche, Indianapolis, IN, USA) following the manufacturer’s instructions and as previously described16,22. Briefly, cells were treated with various concentrations (0, 125, 250, or 500 µg/mL for peritoneal MΦ; 200 µg/mL for THP1WT-fortilin and THP1KO-fortilin) of oxLDL (Kalen Biomedical, Montgomery Village, MD, USA) and lysed by lysis buffer provided in the kit. Twenty microliters of each cell lysate and 80 μL of each assay buffer containing anti-histone-biotin and anti-DNA-peroxidase were then dispensed into streptavidin-coated wells of a 96-well plate in five sets for peritoneal MΦ and in triplicate for THP1WT-fortilin and THP1KO-fortilin cells. After incubation and wash, captured nucleosomes were detected using the 2,2’-azino-di (3-ethylbenzthiazoline-6-sulfonic acid method), with signal intensity measured at 405 nm (A405). The DNA fragmentation index was calculated as (A405study – A405media) / (A405positive control – A405media) × 100 and expressed as arbitrary unit (A.U.), where A405study represents A405 of the study cell sample, A405media is theA405 of the medium only sample, and A405positive control is the A405 of medium containing DNA-histone-complex provided in the kit.

BrdU proliferation assay

We induced peritoneal MФ in fortilinWT-MΦ-HC and fortilinKO-MΦ-HC mice as described above. BrdU incorporation into MФ was determined using a BrdU Cell Proliferation Kit (Calbiochem, San Diego, CA, USA; Catalog #: QIA58, Lot #: D00161810) according to the manufacturer’s instructions. Briefly, 2 × 104 cells from each group were seeded in 6 wells of a 96-well cell culture plate and allowed to adhere to the well. Cells were labeled with BrdU for 24 h before they were fixed and denatured using the fixative/denaturing solution provided in the kit. Cells were then incubated with 1x anti-BrdU antibody for 1 h and, after being washed, they were incubated with goat anti-mouse IgG antibody conjugated to HRP for 30 min. Bound anti-BrdU antibody-anti-mouse-IgG complex was detected by the HRP substrate tetra-methylbenzidine and quantified using a SpectraMax spectrophotometer (Molecular Devices, Sunnyvale, CA, USA) at wavelengths of 450–540 nm. The BrdU index of MФ from fortilinKO-MФ mice was calculated as A450 – A540fortilinKO-MФ / A450 – A540fortilinWT-MФ.

MTS proliferation assay

THP1WT-fortilin and THP1KO-fortilin cells were seeded (1 × 104 per well, 8 wells each) in 96-well plates in 100 μL of medium and incubated for 24, 48, 72, and 96 h at 37 °C. The mass of living cells was measured using the MTS method according to the manufacturer’s instructions (CellTiter96®Aqueous, Cat #G3582, Promega, Madison, WI, USA). Briefly, 100 μL of MTS reagent were added directly to the culture medium at the four time points. The cells were incubated at 37°C for 2 h in a humidified, 5% CO2 atmosphere before absorbance at 490 nm (A490) was recorded using a 96-well plate reader. The MTS growth index was calculated as (A490THP1-WT-fortilin – A490Media at a given time point) / (A490THP1-WT-fortilin – A490Media at time zero) or (A490THP1-KO-fortilin – A490Media at a given time point) / (A490THP1-KO-fortilin – A490Media at time zero).

FC formation assays

In vivo FC formation assay using ORO staining

Fifteen-week old male fortilinWT-MФ-HC (N = 4) and fortilinKO-MФ-HC (N = 4) mice were placed on a HFD (Clinton-Cybulsky High Fat Rodent Diet with Regular Casein and 1.25% added Cholesterol (D12108Ci: Irradiate-3), Research Diets, Inc., New Brunswick, NJ, USA) for 4 weeks before they were intraperitoneally injected with 1 mL of 3% thioglycollate (Fluka). Four days later, peritoneal MФ were harvested from the peritoneal cavity and allowed to attach to tissue culture plates. For ORO staining, 1 ×105 MФ from each animal were seeded in duplicate on a round cover slip within a well of a 24-well plate and incubated in DMEM with 20% FBS overnight at 37°C in a humidified incubation chamber with 5% CO2. The next morning, cells were fixed using Perfusion Fixative (Electron Microscopy Sciences, Hatfield, PA, USA; Catalog #: 1224SK, containing PFA 4% and sucrose 4% in PBS 0.1 M, pH 7.2) for 15 min at room temperature. After cells were washed, 200 µL of propylene glycol were added to each well for 5 min before cells were stained with 200 µL of 0.5% ORO in propylene glycol solution for 10 min at 60 °C. Cells were then rinsed with 500 µL of 85% propylene glycol solution and washed twice with 500 µL of ddH2O. The coverslip with stained cells was then mounted on Superfrost-plus microscope slides (Thermo Fisher, Catalog #: 12-550-15) using PermaFlour™ Aqueous Mounting Medium (Thermo Fisher, Catalog #: TA-030-FM). The FC index (arbitrary unit, A.U.) was calculated as (the number of ORO-positive MФ) / (the number of total MФ) × 100. At least 126 cells were counted in a field. Eight randomly selected fields were counted in one slide/well, and two slides were counted per animal.

FC formation assay using flow cytometry

We performed a flow cytometry-based FC formation assay as described previously131 with modifications. Briefly, THP1WT-fortilin and THP1KO-fortilin cells were incubated for 8 h with either (i) 10 µg/mL of 3,3’- dioctadecyloxacarbocyanine (DiO)-labeled medium oxLDL (Kalen Biomedical, Catalog #: 770282-9) in RPMI-1640 medium with 10% (v/v) lipoprotein deficient serum (LPDS) or (ii) RPMI-1640 medium with 10% (v/v) LPDS at 37°C. Cells were then washed twice with PBS and resuspended in Flow Cytometry Staining Buffer (eBioscience, San Diego, CA, USA; Catalog #: 00-4222-26). DiO-oxLDL uptake was analyzed by flow cytometry on a Canto II Flow Cytometer (Becton Dickinson, Franklin Lake, NJ, USA) using a blue laser (488 nm) and the 530/30 bandpass. The data were analyzed using FlowJo Software (Becton Dickinson). The FC index was calculated as the mean of median fluorescence intensity of DiO-oxLDL-treated cells divided by that of medium-treated cells, and values were expressed as arbitrary units (A.U.). The experiment was performed in three independent sets, and the result was presented as mean with standard deviation (s.d.).

Migration assays

We performed in vitro migration assays as previously described132 with modifications. Briefly, peritoneal MФ from fortilinWT-fortilin (N = 3) and fortilinKO-fortilin (N = 3) mice were induced by intraperitoneal injection of 3% thioglycollate. Two thousand each of peritoneal MФ suspended in 25 µL of DMEM without FBS were seeded on a pore area in the middle plate of the ChemoTx® Cell Migration System (Neuro Probe, Inc., Gaithersburg, MD, USA; Catalog #: 101-5), which consists of an upper lid, middle plate with a polycarbonate track-etch membrane with pore size of 5 µm, and a lower chamber. Next, 30 µL of DMEM with 1% mouse serum from 8-month-old HC male Ldlr-/-Apobec1-/- mice were aliquoted into the lower chambers of the system. Two identical plates were generated. The cells were incubated at 37°C for 14 h. After incubation, all cells on the lower surface of the membrane of the first plate were scraped off, leaving the cells that attached to the membrane but did not migrate through the membrane. All cells on the upper surface of the membrane of the second plate were scraped off, leaving the cells that had migrated through the membrane. Remaining cells were fixed with 4% PFA, permeabilized with 70% methanol, and stained with hematoxylin solution. The number of cells on the upper surface of the membrane (Cellstop) and Cellsbottom were counted from three randomly selected fields under a light microscope. The migration index (%) was calculated as Cellsbottom / (Cellstop + Cellsbottom) × 100 for MФ induced from each mouse. On average, 109 cells were counted per field.

Phagocytosis assays

Phagocytosis assays were performed as previously described133 using BMDMФ from fortilinWT-MФ (BMDMФWT-fortilin) mice (N = 6) and fortilinKO-MФ (BMDMФKO-fortilin) mice (N = 5). Zymosan A Bioparticles conjugated to Alexa Fluor 594 and opsonized by purified rabbit polyclonal IgG antibodies (Thermo Fisher-Molecular Probes, Catalog #s: Z23374 and Z2850, respectively) were added to the culture medium (RPMI-1640 with 10% FBS) of BMDMФ in the wells of a 24-well plate at a multiplicity of infection of 10. The plate was centrifuged at 450 g for 2 min to allow the bioparticles to attach to BMDMФ. After the treatment, BMDMФ were incubated in a humidified 37°C, 5% CO2 incubator for 1 h before phagocytosis was stopped by ice-cold PBS. The cells were then fixed directly in the wells with 4% PFA, washed twice with PBS, permeabilized with permeabilization solution (0.5% Triton X-100 and 1% FBS in PBS), stained with fluorescein isothiocyanate-labeled phalloidin (Sigma-Aldrich, St. Louis, MO, USA; Catalog #: P5282) and then with 1 µg/mL of DAPI, washed again, and briefly air dried before phagocytosed particles were visualized under a fluorescence microscope. At least 650 cells were counted per field, and three randomly selected fields were examined per sample. A phagocytosis index (A.U.) was calculated as the number of red particles per 100 BMDMФ.

MΦ transdifferentiation assay

THP1 human monocyte-MΦ cells

To test the possibility that fortilin deficiency in MΦ causes MΦ to transdifferentiate into VSMCs, we seeded 0.5 ×106 THP1WT-fortilin and THP1KO-fortilin cells in triplicate in 6-well dishes, differentiated them using 5 ng/mL of PMA, incubated them for 8 h in the absence or presence of 50 µg/mL of oxLDL, harvested the cells, isolated RNAs, and subjected them to RT-qPCR for the markers of VSMCs and MΦ (Fig. 5b–f), using the protocol described above. We also subjected 30 µg of proteins isolated from the same cells to western blot analyses to validate the findings of RT-qPCR using the protocol described above (Fig. 5g).

Primary human MΦ (phMΦ)

To further validate the findings from THP1 cells, we first acquired phMΦ (human M1 MΦ [hMDM-GMCSF(-)], Catalog #: C12916, Sigma Aldrich) and cultured them according to the manufacturer’s instructions. To knockdown fortilin in phMΦ, we transduced the cells with lentivirus short hairpin RNA targeting fortilin (shRNAfortilin) particles (MISSION®, Catalog #: TRCN0000147481, 0000180005, 0000183718, 0000413426, and 0000435136, Sigma Aldrich) or with control lentivirus particles (shRNAcontrol)(MISSION®, Catalog #: SHC016V) following manufacturer’s instructions at a multiplicity of infection of 3. We then selected transduced cells by incubating them in medium containing 100 μg/mL of puromycin for 3 days. Next, we seeded 1.0 × 103 phMΦ transduced with either shRNAfortilin (hereafter, phMΦsh-fortilin) or shRNAcontrol (phMΦsh-control) in triplicate in 6-well dishes, incubated them for 8 h in the absence or presence of 50 µg/mL of oxLDL, harvested them, isolated total RNAs, and subjected it to RT-qPCR for the markers of VSMCs and MΦ using the protocol described above.

Generation of CM from THP1WT-fortilin and THP1KO-fortilin cells

We generated CM from THP1WT-fortilin and THP1KO-fortilin cells by seeding 1 × 106 cells in each well of a 6-well plate, differentiating them in the medium containing 5 ng/mL of PMA, washing them with PBS, incubating them in DMEM supplemented with 50 µg/mL of oxLDL for 8 h. After transferring the media to microfuge tubes, we centrifuged the samples at 1300 x g for 5 min. We transferred the media to sterile 15 mL tubes and used them immediately for the experiments without freezing and thawing.

Immunodepletion of TGF-β1

We first covalently coupled mouse α-TGF-β mAb (R&D Systems, Minneapolis, MN, USA; Clone 1D11, Catalog #: MAB1835-100) to tosylactivated magnetic beads (Dynabeads® M-280; Thermo Fisher, Catalog #: 14203) following manufacturer’s instructions. We then immunodepleted TGF-β1 from the CM from THP1WT-fortilin and THP1KO-fortilin as previously described119. Briefly, we mixed 1 mL of CM with 1 mL of α-TGF-β-mAb-coated magnetic beads (20 mg/mL), incubated the mixture for 24 h at 4 °C, immobilized the beads with a magnet, and transferred the supernatants to fresh microcentrifuge tubes. We then filter-sterilized the immunodepleted CM using a 0.2 µm sterile syringe filter (Fisherbrand™Syringe Filters, Catalog #: 09-719 C) before adding them to UCDMSCs. For the negative control, we used RPMI-1640 medium supplemented with 10% LPDS and 0.1% penicillin/streptomycin/amphotericin B solution (10 units/mL, 10 µg/mL, and 25 ng/mL, respectively). For the positive control, we used the same medium with human recombinant TGF-β1 at 5 ng/mL (R&D Systems; Catalog #: 240-B-010/CF).

Mesenchymal stem cell differentiation assays

For the time course analysis of the differentiation of UCDMSCs, we seeded 2 × 105 cells into each well of a 12-well plate in triplicate in the complete MSC culture medium described in the Human umbilical cord-derived mesenchymal stem cells (UCDMSCs) section. The next morning, we washed the cells with PBS and started to incubate them in (a) medium only (RPMI media supplemented with 10% LPDS and 50 µg/mL oxLDL), (b) medium + 5 ng/mL of TGF- β1, (c) CM from THP1WT-fortilin, or (d) CM from THP1KO-fortilin for up to 120 h. We harvested the cells at 0, 72, and 120 h, extracted the RNAs, and subjected them to RT-qPCR using an appropriate primer and probe set for a given gene of interest.

To assess the impact of TGF-β1 on the differentiation of UCDMSCs, we seeded 1 × 105 cells into each well of 6-well dishes in triplicate and incubated them in (a) medium only without TGF-β1 immunodepletion (ID), (b) medium only with TGF-β1 ID, (c) medium + 5 ng/mL of TGF-β1, (d) medium + 5 ng/mL of TGF-β1 with TGF-β1 ID, (e) CM from THP1WT-fortilin, (f) CM from THP1WT-fortilin with TGF-β1 ID, (g) CM from THP1KO-fortilin, or (h) CM from THP1KO-fortilin with TGF-β1 ID for 120 h. We then harvested the cells, extracted the RNAs, and subjected them to RT-qPCR using an appropriate primer and probe set for a given gene of interest.

Efferocytosis assays

Efferocytosis is the phagocytotic removal of apoptotic cells by MΦ. We evaluated the role of fortilin in efferocytosis using the protocol described by Salina et al.61. Briefly, we first labeled 1 × 107 of THP1WT-fortilin and THP1KO-fortilin cells with CellTrace™ carboxyfluorescein succinimidyl ester (CFSE) (Invitrogen™-ThermoFisher, excitation/emission = 492/517, laser used = 488 nm [blue], bandpass filter = 530/30 nm [FITC]), following the manufacturer’s instructions. After washing, we seeded 1×106 cells per well in 6 well-plates and allowed them to fully differentiate into MΦ in the presence of 50 ng/mL of PMA for 24 h at 37°C and 5% CO₂. Next, to generate labeled apoptotic cells (ACs), we induced apoptosis in Jurkat cells by subjecting them to UV irradiation (50 mJ/cm2 for 30 min), labeled them with CellTrace™ Far Red (Invitrogen™-ThermoFisher, excitation/emission = 648/658, laser used = 640 nm [red]; bandpass filter = 660/20 nm [APC]) following the manufacturer’s instructions, and incubated them for 4 h at 37 °C and 5% CO₂ to allow apoptosis to progress. We then collected, washed, and resuspended the ACs in fresh RPMI medium at a final concentration of 5 × 10⁶ cells/mL. We added ACs to THP1WT-fortilin and THP1KO-fortilin cells at a 1:1 THP1-to-AC ratio, incubated the cells for 18 h, washed off the unengulfed ACs, added a second round of ACs to the THP1 cells and incubated them for 2 h. After washing, we harvested the THP1 cells with a cell scraper, stained them with Zombie NIR (BioLegend, San Diego, CA, USA; excitation/emission = 715/743, laser used = 640 nm [red], 780/40 nm [APC/Cy7]) for 10 min in the dark, and fixed them in 2% PFA before washing and resuspending the cells in PBS for flow cytometry analyses. In flow cytometry, we first excluded debris based on morphology profiles (FSC-A vs. SSC-A), non-singlet cells using FSC-A vs. FSC-H, and nonviable cells (ZombieNIR+) using SSC-A vs. APC/Cy7-A. We then gated on CFSE-labeled THP1 cells (CFSE+, FITC) and visualized them on a FITC-A vs. APC-A plot where CFSE+FarRed+ cells represented THP1 cells that had engulfed ACs. We calculated the efferocytosis index as the percentage of CFSE+FarRed+ cells out of total CFSE+ cells, expressed as a percentage. We performed the experiment four independent times.

Ethics statement

We have complied with all relevant ethical regulations for animal use. This study was carried out in accordance with the recommendations in the Guide for the Care and Use of Laboratory Animals of the National Institutes of Health. All experimental protocols involving animals were registered with and approved by the Institutional Animal Care and Use Committees (IACUCs) of the University of Texas Medical Branch and the University of Washington prior to study initiation.

Statistical analysis and reproducibility

The degree of the spread of data was expressed by the standard deviation (±s.d.). We used the two-tailed unpaired t test (Student’s t test) to compare the means of two groups when data of both groups were normally distributed, while we used the Mann–Whitney test when the data were not normally distributed. To compare the means of three or more groups, we used one-way analysis of variance (ANOVA) with Fisher’s or Tukey-Kramer’s pairwise comparison (Minitab® or GraphPad Prism [Sandiego, CA, USA]). For survival analysis of fortilinKO-MФ and fortilinWT-MФ mice, we constructed a Kaplan-Meier curve using GraphPad Prism. The log-rank Mantel-Cox test was then used to determine whether a statistical difference existed between the two survival curves as previously described134. P < 0.05 was considered to be statistically significant. P < 0.10 was considered to show a trend toward statistical significance. Both Prism Software 10.1.2 and Minitab® 17 or 21 were used for statistical analyses. The numbers of biological replicates used in each experiment, along with the statistical test used to analyze the particular experiment, are provided in the manuscript. No data were excluded unless outliers were identified and verified by the outlier tests (Minitab® 17/21 or GraphPad Prism). Although the researchers were not blinded to allocation during experiments and readout evaluation, all readouts from the experiments were predetermined, highly objective, and obtained according to validated protocols.

Reporting summary

Further information on research design is available in the Nature Portfolio Reporting Summary linked to this article.