Abstract
Urbanization profoundly alters ecosystems, yet urban areas, home to more than half the world’s population, also support a wide range of biodiversity. Urban street trees, a crucial component of urban green space, are among the most frequently encountered green infrastructure in city environments for urban residents. Despite their vast range of benefits to urban quality of life, the taxonomic diversity and phylogenetic diversity patterns at the regional scale, and the underlying drivers, remain insufficiently understood. To address this, we explore and map geographic patterns of taxonomic and phylogenetic diversity of street trees across 116 county-level cities of Yunnan province and further analyze the factors influencing these patterns. Urban street trees comprise 180 species (119 genera, 47 families), with distribution highly uneven (81 species occurring only once and 30 species in over 10 cities). We found that climatic and anthropogenic (i.e., socio-economic and urbanization metrics) factors jointly influenced taxonomic and phylogenetic diversity, with anthropogenic factors primarily driving taxonomic diversity and climatic factors dominating phylogenetic diversity. Although urban expansion can introduce more species, the phylogenetic structure of street trees is still shaped by climate. Enhancing diversity requires introducing climate-resilient species that can adapt to current and future environmental stresses.
Data availability
The data supporting the findings of this study are publicly available on figshare (https://doi.org/10.6084/m9.figshare.30277585). Additionally, data are also contained in the supplementary materials.
Code availability
The code for the analysis will be publicly available on figshare (https://doi.org/10.6084/m9.figshare.30277585). We ran all analyses using the software R 4.3.254.
References
Elmqvist, T. et al. Urbanization, Biodiversity And Ecosystem Services: Challenges And Opportunities: A Global Assessment. (Springer Nature, 2013).
Hou, Y., Li, J., Li, G. & Qi, W. Negative effects of urbanization on plants: a global meta-analysis. Ecol. Evol. 13, 1–9 (2023).
Li, G. et al. Global impacts of future urban expansion on terrestrial vertebrate diversity. Nat. Commun. 13, 1628 (2022).
Ives, C. D. et al. Cities are hotspots for threatened species. Glob. Ecol. Biogeogr. 25, 117–126 (2016).
Lepczyk, C. A., Aronson, M. F. & La Sorte, F. A. Cities as sanctuaries. Front. Ecol. Environ. 21, 251–259 (2023).
Liu, J. & Slik, F. Are street trees friendly to biodiversity? Landsc. Urban Plan 218, 104304 (2022).
Willis, K. J. & Petrokofsky, G. The natural capital of city trees. Science 356, 374–376 (2017).
Gómez-Baggethun, E. et al. Urban ecosystem services. Urbanization, Biodiversity and Ecosystem Services: Challenges and Opportunities: A Global Assessment, 175–251 (2013).
Mullaney, J., Lucke, T. & Trueman, S. J. A review of benefits and challenges in growing street trees in paved urban environments. Landsc. Urban Plan. 134, 157–166 (2015).
Redlich, S. et al. Disentangling effects of climate and land use on biodiversity and ecosystem services—a multi-scale experimental design. Methods Ecol. Evol. 13, 514–527 (2022).
Silva, P. A. Bird-flower interactions in an urban area: Ceiba pubiflora provides nectar and promotes biodiversity in the city. Urban Forest. Urban Green. 36, 42–49 (2018).
Säumel, I., Weber, F. & Kowarik, I. Toward livable and healthy urban streets: roadside vegetation provides ecosystem services where people live and move. Environ. Sci. Policy. 62, 24–33 (2016).
Silva, J. L. S., de Oliveira, M. T. P., Cruz-Neto, O., Tabarelli, M. & Lopes, A. V. Plant–pollinator interactions in urban ecosystems worldwide: a comprehensive review including research funding and policy actions. Ambio. 50, 884–900 (2021).
Stevenson, P. C. et al. The state of the world’s urban ecosystems: what can we learn from trees, fungi, and bees? Plants People Planet 2, 482–498 (2020).
Faith, D. P. Conservation evaluation and phylogenetic diversity. Biol. Conserv. 61, 1–10 (1992).
Le Bagousse-Pinguet, Y. et al. Phylogenetic, functional, and taxonomic richness have both positive and negative effects on ecosystem multifunctionality. Proc. Natl. Acad. Sci. USA 116, 8419–8424 (2019).
Srivastava, D. S., Cadotte, M. W., MacDonald, A. A. M., Marushia, R. G. & Mirotchnick, N. Phylogenetic diversity and the functioning of ecosystems. Ecol. Lett. 15, 637–648 (2012).
Kendal, D., Williams, N. S. G. & Williams, K. J. H. A cultivated environment: exploring the global distribution of plants in gardens, parks and streetscapes. Urban Ecosyst. 15, 637–652 (2012).
Smart, N., Eisenman, T. S. & Karvonen, A. Street tree density and distribution: an international analysis of five capital cities. Front. Ecol. Evol. 8, 562646 (2020).
Li, X. & Walker, D. The plant geography of Yunnan Province, southwest China. J. Biogeogr. 13, 367–397 (1986).
Myers, N., Mittermeier, R. A., Mittermeier, C. G., Da Fonseca, G. A. & Kent, J. Biodiversity hotspots for conservation priorities. Nature. 403, 853 (2000).
Qian, L., Chen, J., Deng, T. & Sun, H. Plant diversity in Yunnan: current status and future directions. Plant Divers. 42, 281–291 (2020).
Xie, C., Chen, S., Liu, D. & Jim, C. Y. Unveiling the complex networks of urban tree diversity research: a global perspective. Ecol. Evol. 14, e11630 (2024).
Ossola, A. et al. The Global Urban Tree Inventory: a database of the diverse tree flora that inhabits the world’s cities. Glob. Ecol. Biogeogr. 29, 1907–1914 (2020).
Silva, J. L. D. S. et al. High richness of exotic trees in tropical urban green spaces: reproductive systems, fruiting and associated risks to native species. Urban Forest. Urban Green. 50, 126659 (2020).
Palma, E. et al. Functional trait changes in the floras of 11 cities across the globe in response to urbanization. Ecography. 40, 875–886 (2017).
Threlfall, C. G. et al. Increasing biodiversity in urban green spaces through simple vegetation interventions. J. Appl. Ecol. 54, 1874–1883 (2017).
Aznarez, C. et al. Luxury and legacy effects on urban biodiversity, vegetation cover and ecosystem services. Npj Urban Sustain. 3, 47 (2023).
Blanchette, A., Trammell, T. L. E., Pataki, D. E., Endter-Wada, J. & Avolio, M. L. Plant biodiversity in residential yards is influenced by people’s preferences for variety but limited by their income. Landsc. Urban Plan. 214, 104149 (2021).
Cavender Bares, J. et al. Horticultural availability and homeowner preferences drive plant diversity and composition in urban yards. Ecol. Appl. 30, e02082 (2020).
Aronson, M. F. et al. Biodiversity in the city: key challenges for urban green space management. Front. Ecol. Environ. 15, 189–196 (2017).
Hope, D. et al. Socioeconomics drive urban plant diversity. Proc. Natl. Acad. Sci. USA 100, 8788–8792 (2003).
Qian, H. et al. Phylogenetic dispersion and diversity in regional assemblages of seed plants in China. Proc. Natl. Acad. Sci. USA 116, 23192–23201 (2019).
Latham, R. E. & Ricklefs, R. E. Global patterns of tree species richness in moist forests: energy-diversity theory does not account for variation in species richness. Oikos. 67, 325–333 (1993).
Nesbitt, L., Meitner, M. J., Sheppard, S. R. J. & Girling, C. The dimensions of urban green equity: a framework for analysis. Urban Forest. Urban Green. 34, 240–248 (2018).
Pauchard, A. & Barbosa, O. Regional assessment of Latin America: rapid urban development and social economic inequity threaten biodiversity hotspots. Urbanization, Biodiversity and Ecosystem Services: Challenges and Opportunities. (Springer, Dordrecht, 2013) pp 589–608.
Fan, C., Johnston, M., Darling, L., Scott, L. & Liao, F. H. Land use and socio-economic determinants of urban forest structure and diversity. Landsc. Urban Plan 181, 10–21 (2019).
Yang, Y., Tian, K., Hao, J., Pei, S. & Yang, Y. Biodiversity and biodiversity conservation in Yunnan, China. Biodivers. Conserv. 13, 813–826 (2004).
Zhu, H. Geographical patterns of Yunnan seed plants may be influenced by the clockwise rotation of the Simao-Indochina geoblock. Front. Earth Sci. 3, 53 (2015).
Yunnan Yearbook Editorial Committee (ed). (Yunnan Yearbook, 2020).
Yang, J. & Huang, X. The 30 m annual land cover dataset and its dynamics in China from 1990 to 2019. Earth Syst. Sci. Data 13, 3907–3925 (2021).
McGarigal, K. FRAGSTATS Help. (University of Massachusetts, Amherst, MA, USA, 2015).
Lin, Q. et al. A dataset on catalogue of alien plants in China. Sheng Wu Duo Yang Xing 30, 22127 (2022).
Gao, Z. et al. Drivers of spontaneous plant richness patterns in urban green space within a biodiversity hotspot. Urban Forest. Urban Green. 61, 127098 (2021).
Oksanen, J. et al. The vegan package. Commun. Ecol. Package 10, 719 (2007).
Pavoine, S. & Bonsall, M. B. Measuring biodiversity to explain community assembly: a unified approach. Biol. Rev. 86, 792–812 (2011).
Webb, C. O., Ackerly, D. D. & Kembel, S. W. Phylocom: software for the analysis of phylogenetic community structure and trait evolution. Bioinformatics. 24, 2098-2100 (2008).
Zanne, A. E. et al. Three keys to the radiation of angiosperms into freezing environments. Nature 506, 89–92 (2014).
Jin, Y., Qian, H. & U.PhyloMaker: An R package that can generate large phylogenetic trees for plants and animals. Plant Divers. 45, 347–352 (2023).
Gareth, J., Daniela, W., Trevor, H. & Robert, T. An Introduction to Statistical Learning: With Applications in R. (Spinger, 2013).
Menard, S. Applied Logistic Regression Analysis. (Sage, 2002).
Vittinghoff, E., Glidden, D. V., Shiboski, S. C. & McCulloch, C. E. Regression methods in biostatistics: linear, logistic, survival, and repeated measures models. (Springer, 2006).
Lai, J., Zou, Y., Zhang, S., Zhang, X. & Mao, L. glmm. hp: an R package for computing individual effect of predictors in generalized linear mixed models. J. Plant Ecol. 15, 1302–1307 (2022).
Core, R. Team. R. Version 3, 1 (2015).
Acknowledgements
We thank the three anonymous reviewers for their constructive comments and suggestions. We would like to extend our gratitude to Tian Wu, Zhenliang Cao, Pengchen Wu, Penghui Teng, and Boxuan Jia from Kunming University for their assistance with the field survey. We also wish to thank Leng Xiushan from Beijing Forestry University for the kind help provided in the preparation of the figures. This research was funded by the Major Program for Basic Research Project of Yunnan Province (202101BC070002), the Ministry of Science and Technology of China (2015FY210200), the ECNU Academic Innovation Promotion Program for Excellent Doctoral Students (YBNLTS2019), and Fundamental and Interdisciplinary Disciplines Breakthrough Plan of the Ministry of Education of China (JYB2025XDXM901).
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Zhiwen Gao: field survey, data collection, analysis, interpretation and drafting the paper; Yanyi Yang, Mingming Zhuge, Xinyi Luo, Yanhong Wang, Tiyuan Xia, Yuandong Hu: field survey, collecting data and revising the paper; Kun Song and Liangjun Da: funding, conception, revising the manuscript and final approval of the paper. All authors have read and agreed to the published version of the paper.
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Gao, Z., Yang, Y., Zhuge, M. et al. Anthropogenic Factors Dominate Taxonomic Diversity of Urban Street Trees While Climate Drives Phylogenetic Diversity. npj Urban Sustain (2026). https://doi.org/10.1038/s42949-026-00383-4
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DOI: https://doi.org/10.1038/s42949-026-00383-4