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Linking single-cell multiomics with GWAS to reveal key regulators of disease risk

We developed scMORE (single-cell multiomics regulon enrichment), a computational framework that integrates single-cell multiomics with genome-wide association study summary statistics to identify transcription factor–chromatin–gene regulatory networks (eRegulons) that underlie complex diseases. Applying scMORE to 31 traits (including Parkinson’s disease), we investigated immune- and aging-associated eRegulons, and revealed how genetic variants shape cell-type-specific regulatory programs.

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Fig. 1: Overview of scMORE.

References

  1. Badia-i-Mompel, P. et al. Gene regulatory network inference in the era of single-cell multi-omics. Nat. Rev. Genet. 24, 739–754 (2023). This review presents the methods and challenges in gene regulatory network inference using single-cell multiomics.

    Article  CAS  PubMed  Google Scholar 

  2. Ma, Y. et al. Polygenic regression uncovers trait-relevant cellular contexts through pathway activation transformation of single-cell RNA sequencing data. Cell Genom. 3, 100383 (2023). This article introduces a computational method (scPagwas) that integrates coordinated pathways from single-cell transcriptomic data and GWAS summary statistics to identify trait-relevant genes and cell subpopulations.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  3. Zhang, M. J. et al. Polygenic enrichment distinguishes disease associations of individual cells in single-cell RNA-seq data. Nat. Genet. 54, 1572–1580 (2022). This article presents a computational method (single-cell disease relevance score (scDRS)) that links single-cell transcriptomic data with polygenic disease risk at single-cell resolution.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  4. Li, J. et al. Integrating microbial GWAS and single-cell transcriptomics reveals associations between host cell populations and the gut microbiome. Nat. Microbiol. 10, 1210–1226 (2025). This article presents a computational framework (single-cell bacteria polygenic score (scBPS)) that integrates microbial GWAS and single-cell transcriptomic profiles of 24 human organs to uncover host tissues and cell types relevant to gut microorganisms.

    Article  CAS  PubMed  Google Scholar 

  5. Yu, F. et al. Variant to function mapping at single-cell resolution through network propagation. Nat. Biotechnol. 40, 1644–1653 (2022). This article presents a computational framework (single cell analysis of variant enrichment through network propagation of genomic data (SCAVENGE)) that integrates scATAC-seq data with GWAS summary statistics to map causal variants to their relevant cellular context.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

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This is a summary of: Ma, Y. et al. Integrating polygenic signals and single-cell multiomics identifies cell-type-specific regulomes critical for immune- and aging-related diseases. Nat. Aging https://doi.org/10.1038/s43587-025-01027-5 (2025).

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Linking single-cell multiomics with GWAS to reveal key regulators of disease risk. Nat Aging 6, 36–37 (2026). https://doi.org/10.1038/s43587-025-01047-1

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