Table 1 Mutations in the SARS-CoV-2 spike protein identified at high frequencies in Peruvian strains of each of the four sub-lineages of Peruvian origin
From: Genomic epidemiology of SARS-CoV-2 in Peru from 2020 to 2024
Position in Wuhan-1 reference strain | Sub-lineage | Mutation | Nucleotide in sub-lineage | Proportion of sub-lineage strains carrying nucleotide | Proportion of other strains carrying nucleotide |
|---|---|---|---|---|---|
21786* | Lambda C.37 | G75V | T | 0.968 | 0.045 |
21789* | Lambda C.37 | T76I | T | 0.987 | 0.043 |
22299* | Lambda C.37 | Δ247-252 | - | 0.977 | 0.015 |
22917* | Lambda C.37 | L452Q | A | 0.997 | 0.071 |
23031* | Lambda C.37 | F490S | C | 0.991 | 0.218 |
23403* | Lambda C.37 | D614G | G | 1 | 0.939 |
23604 | Lambda C.37 | P681P | C | 0.988 | 0.082 |
23731 | Lambda C.37 | T723T | T | 0.999 | 0.045 |
24138* | Lambda C.37 | T859N | A | 0.997 | 0.024 |
21614 | Gamma P.1.12 | L18F | T | 0.997 | 0.045 |
21621 | Gamma P.1.12 | T20N | A | 0.998 | 0.042 |
21638 | Gamma P.1.12 | P26S | T | 0.998 | 0.051 |
21974 | Gamma P.1.12 | D138Y | T | 0.994 | 0.037 |
22132 | Gamma P.1.12 | R190S | T | 0.948 | 0.043 |
22812 | Gamma P.1.12 | K417T | C | 0.906 | 0.035 |
23012 | Gamma P.1.12 | E484K | A | 0.988 | 0.05 |
24642 | Gamma P.1.12 | T1027I | T | 0.999 | 0.037 |
25088 | Gamma P.1.12 | V1176F | T | 0.999 | 0.05 |
21810 | Omicron XBB.2.6 | V83A | C | 0.995 | 0.076 |
22000 | Omicron XBB.2.6 | H146Q | A | 0.999 | 0.087 |
22109 | Omicron XBB.2.6 | Q183E | G | 0.947 | 0.064 |
22200 | Omicron XBB.2.6 | V213E | A | 0.983 | 0.08 |
22320 | Omicron XBB.2.6 | D253G | G | 0.907 | 0.018 |
22577 | Omicron XBB.2.6 | G339R | C | 0.989 | 0.075 |
22664 | Omicron XBB.2.6 | L368M | A | 0.976 | 0.073 |
22895 | Omicron XBB.2.6 | V445L | C | 0.984 | 0.074 |
22896 | Omicron XBB.2.6 | V445A | C | 0.983 | 0.083 |
22942 | Omicron XBB.2.6 | N460K | G | 0.985 | 0.098 |
23019 | Omicron XBB.2.6 | F486S | C | 0.997 | 0.076 |
22894 | Omicron DJ.1 | K444N | T | 0.932 | 0.023 |
