Abstract
Insomnia disorder, major depressive disorder and anxiety disorders are the most common mental health conditions, often co-occurring and sharing genetic risk factors, suggesting possible common brain mechanisms. Here we analyzed multimodal magnetic resonance imaging data from over 25,604 UK Biobank participants to identify shared versus symptom-specific brain features associated with symptom severity of these disorders. Smaller total cortical surface area, smaller thalamic volumes and weaker functional connectivity were linked to more severe symptoms of all three disorders. Disorder-specific symptom severity associations were also observed: smaller reward-related subcortical regions were associated with more severe insomnia symptoms; thinner cortices in language, reward and limbic regions with more severe depressive symptoms; and weaker amygdala reactivity and functional connectivity of dopamine-, glutamate- and histamine-enriched regions with more severe anxiety symptoms. These symptom-specific associations were often in parts of the amygdala–hippocampal–medial prefrontal circuit, highlighting the interconnectedness of these disorders and suggesting new pathways for research and treatment.
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Data availability
The phenotype and MRI data from the UK Biobank that were used in this study are available upon application via UK Biobank at https://www.ukbiobank.ac.uk/register-apply. Cognitive–emotional annotations were obtained using data available via GitHub at https://github.com/ehbeam/neuro-knowledge-engine. Neurotransmission systems were derived from data available via GitHub at https://github.com/netneurolab/hansen_receptors.
Code availability
Structural and functional connectivity was reconstructed using CATO, whose source code is available via GitHub at https://github.com/dutchconnectomelab/CATO. Brain plots were visualized using the Simple Brain Plot toolbox65 available via GitHub at https://github.com/dutchconnectomelab/Simple-Brain-Plot. MATLAB code used in the statistical analyses is available via GitHub at https://github.com/Sleep-and-Cognition/multimodal-insomnia-depression-anxiety.
References
Wittchen, H. U. et al. The size and burden of mental disorders and other disorders of the brain in Europe 2010. Eur. Neuropsychopharmacol. 21, 655–679 (2011).
van Someren, E. J. W. Brain mechanisms of insomnia: new perspectives on causes and consequences. Physiol. Rev. 101, 995–1046 (2021).
Cuijpers, P. The challenges of improving treatments for depression. JAMA 320, 2529–2530 (2018).
Tyrer, P. & Baldwin, D. Generalised anxiety disorder. Lancet 368, 2156–2166 (2006).
Schiel, J. E. et al. Associations between sleep health and grey matter volume in the UK Biobank cohort (n = 33 356). Brain Commun. 5, fcad200 (2023).
Schmaal, L. et al. Cortical abnormalities in adults and adolescents with major depression based on brain scans from 20 cohorts worldwide in the ENIGMA Major Depressive Disorder Working Group. Mol. Psychiatry 22, 900–909 (2017).
Harrewijn, A. et al. Cortical and subcortical brain structure in generalized anxiety disorder: findings from 28 research sites in the ENIGMA-Anxiety Working Group. Transl. Psychiatry 11, 502 (2021).
Jansen, P. R. et al. Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways. Nat. Genet. 51, 394–403 (2019).
Romero, C. et al. Exploring the genetic overlap between twelve psychiatric disorders. Nat. Genet. 54, 1795–1802 (2022).
Ohayon, M. M. & Roth, T. Place of chronic insomnia in the course of depressive and anxiety disorders. J. Psychiatr. Res. 37, 9–15 (2003).
Soehner, A. M. & Harvey, A. G. Prevalence and functional consequences of severe insomnia symptoms in mood and anxiety disorders: results from a nationally representative sample. Sleep 35, 1367–1375 (2012).
Serra-Blasco, M. et al. Structural brain correlates in major depression, anxiety disorders and post-traumatic stress disorder: a voxel-based morphometry meta-analysis. Neurosci. Biobehav. Rev. 129, 269–281 (2021).
Goodkind, M. et al. Identification of a common neurobiological substrate for mental illness. JAMA Psychiatry 72, 305–315 (2015).
Janiri, D. et al. Shared neural phenotypes for mood and anxiety disorders: a meta-analysis of 226 task-related functional imaging studies. JAMA Psychiatry 77, 172–179 (2020).
Abdelhack, M. et al. Opposing brain signatures of sleep in task-based and resting-state conditions. Nat. Commun. 14, 7927 (2023).
Leerssen, J. et al. Brain structural correlates of insomnia severity in 1053 individuals with major depressive disorder: results from the ENIGMA MDD Working Group. Transl. Psychiatry 10, 425 (2020).
Benson, K. L., Winkelman, J. W. & Gönenç, A. Disrupted white matter integrity in primary insomnia and major depressive disorder: relationships to sleep quality and depression severity. J. Sleep Res. 32, e13913 (2023).
Bresser, T. et al. The role of brain white matter in depression resilience and response to sleep interventions. Brain Commun. 5, fcad210 (2023).
Li, C. et al. Dynamic functional abnormalities in generalized anxiety disorders and their increased network segregation of a hyperarousal brain state modulated by insomnia. J. Affect. Disord. 246, 338–345 (2019).
Pace-Schott, E. F. et al. Resting state functional connectivity in primary insomnia, generalized anxiety disorder and controls. Psychiatry Res. Neuroimaging 265, 26–34 (2017).
Shen, Z. et al. Deficits in brain default mode network connectivity mediate the relationship between poor sleep quality and anxiety severity. Sleep 47, zsad296 (2023).
Li, M. et al. Abnormalities of thalamus volume and resting state functional connectivity in primary insomnia patients. Brain Imaging Behav. 13, 1193–1201 (2019).
Nugent, A. C., Davis, R. M., Zarate, C. A. Jr & Drevets, W. C. Reduced thalamic volumes in major depressive disorder. Psychiatry Res. 213, 179–185 (2013).
McCutcheon, R. A. et al. Shared and separate patterns in brain morphometry across transdiagnostic dimensions. Nat. Mental Health 1, 55–65 (2023).
van Erp, T. G. et al. Subcortical brain volume abnormalities in 2028 individuals with schizophrenia and 2540 healthy controls via the ENIGMA consortium. Mol. Psychiatry 21, 547–553 (2016).
Hibar, D. P. et al. Subcortical volumetric abnormalities in bipolar disorder. Mol. Psychiatry 21, 1710–1716 (2016).
Stolicyn, A. et al. Comprehensive assessment of sleep duration, insomnia, and brain structure within the UK Biobank cohort. Sleep 47, zsad274 (2023).
Jespersen, K. V. et al. Reduced structural connectivity in insomnia disorder. J. Sleep Res. 29, e12901 (2020).
Tamm, S. et al. No association between amygdala responses to negative faces and depressive symptoms: cross-sectional data from 28,638 individuals in the UK Biobank cohort. Am. J. Psychiatry 179, 509–513 (2022).
Schiel, J. E. et al. Associations between sleep health and amygdala reactivity to negative facial expressions in the UK Biobank cohort. Biol. Psychiatry 92, 693–700 (2022).
Calhoun, V. D. & Sui, J. Multimodal fusion of brain imaging data: a key to finding the missing link(s) in complex mental illness. Biol. Psychiatry 1, 230–244 (2016).
McEwen, B. S., Nasca, C. & Gray, J. D. Stress effects on neuronal structure: hippocampus, amygdala, and prefrontal cortex. Neuropsychopharmacology 41, 3–23 (2016).
Genzel, L., Spoormaker, V. I., Konrad, B. N. & Dresler, M. The role of rapid eye movement sleep for amygdala-related memory processing. Neurobiol. Learn. Mem. 122, 110–121 (2015).
Wassing, R. et al. Restless REM sleep impedes overnight amygdala adaptation. Curr. Biol. 29, 2351–2358.e4 (2019).
Cabrera, Y. et al. Overnight neuronal plasticity and adaptation to emotional distress. Nat. Rev. Neurosci. 25, 253–271 (2024).
Marek, S. et al. Reproducible brain-wide association studies require thousands of individuals. Nature 603, 654–660 (2022).
Fry, A. et al. Comparison of sociodemographic and health-related characteristics of UK Biobank participants with those of the general population. Am. J. Epidemiol. 186, 1026–1034 (2017).
Nakua, H. et al. Systematic comparisons of different quality control approaches applied to three large pediatric neuroimaging datasets. NeuroImage 274, 120119 (2023).
Helwegen, K., Libedinsky, I. & van den Heuvel, M. P. Statistical power in network neuroscience. Trends Cogn. Sci. 27, 282–301 (2023).
Bycroft, C. et al. The UK Biobank resource with deep phenotyping and genomic data. Nature 562, 203–209 (2018).
Miller, K. L. et al. Multimodal population brain imaging in the UK Biobank prospective epidemiological study. Nat. Neurosci. 19, 1523–1536 (2016).
Smith, S. M., Alfaro-Almagro, F. & Miller, K. L. UK Biobank Brain Imaging Documentation (Oxford Centre for Functional MRI of the Brain (FMRIB/WIN), Oxford University on behalf of UK Biobank, accessed 30 January 2024); https://biobank.ctsu.ox.ac.uk/crystal/crystal/docs/brain_mri.pdf.
Fischl, B. FreeSurfer. NeuroImage 62, 774–781 (2012).
Desikan, R. S. et al. An automated labeling system for subdividing the human cerebral cortex on MRI scans into gyral based regions of interest. NeuroImage 31, 968–980 (2006).
de Lange, S. C., Helwegen, K. & van den Heuvel, M. P. Structural and functional connectivity reconstruction with CATO—a Connectivity Analysis TOolbox. NeuroImage 273, 120108 (2023).
Greve, D. N. & Fischl, B. Accurate and robust brain image alignment using boundary-based registration. NeuroImage 48, 63–72 (2009).
Chang, L. C., Walker, L. & Pierpaoli, C. Informed RESTORE: a method for robust estimation of diffusion tensor from low redundancy datasets in the presence of physiological noise artifacts. Magn. Reson. Med. 68, 1654–1663 (2012).
de Reus, M. A. An Eccentric Perspective on Brain Networks (Uitgeverij BOXPress, 2015).
Mori, S., Crain, B. J., Chacko, V. P. & van Zijl, P. C. M. Three-dimensional tracking of axonal projections in the brain by magnetic resonance imaging. Ann. Neurol. 45, 265–269 (1999).
Power, J. D., Barnes, K. A., Snyder, A. Z., Schlaggar, B. L. & Petersen, S. E. Spurious but systematic correlations in functional connectivity MRI networks arise from subject motion. NeuroImage 59, 2142–2154 (2012).
Hariri, A. R., Tessitore, A., Mattay, V. S., Fera, F. & Weinberger, D. R. The amygdala response to emotional stimuli: a comparison of faces and scenes. NeuroImage 17, 317–323 (2002).
Qian, Y. et al. Observational and genetic evidence highlight the association of human sleep behaviors with the incidence of fracture. Commun. Biol. 4, 1339 (2021).
Kroenke, K., Spitzer, R. L. & Williams, J. B. The Patient Health Questionnaire-2: validity of a two-item depression screener. Med. Care 41, 1284–1292 (2003).
Weiss, A. & Deary, I. J. A new look at neuroticism: should we worry so much about worrying? Curr. Dir. Psychol. Sci. 29, 92–101 (2020).
Weiss, A. et al. Conditioning on a collider may or may not explain the relationship between lower neuroticism and premature mortality in the study by Gale et al. (2017): a reply to Richardson, Davey Smith, and Munafò (2019). Psychol. Sci. 30, 633–638 (2019).
Eysenck, S. B., Eysenck, H. J. & Barrett, P. A revised version of the psychoticism scale. Pers. Individ. Differ. 6, 21–29 (1985).
Alfaro-Almagro, F. et al. Confound modelling in UK Biobank brain imaging. NeuroImage 224, 117002 (2021).
Nichols, T. E. & Holmes, A. P. Nonparametric permutation tests for functional neuroimaging: a primer with examples. Hum. Brain Mapp. 15, 1–25 (2002).
Winkler, A. M., Ridgway, G. R., Webster, M. A., Smith, S. M. & Nichols, T. E. Permutation inference for the general linear model. NeuroImage 92, 381–397 (2014).
Manly, B. F. Randomization, Bootstrap and Monte Carlo Methods in Biology (Chapman and Hall/CRC, 2007).
Benjamini, Y. & Hochberg, Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Stat. Soc. B 57, 289–300 (1995).
Beam, E., Potts, C., Poldrack, R. A. & Etkin, A. A data-driven framework for mapping domains of human neurobiology. Nat. Neurosci. 24, 1733–1744 (2021).
Hansen, J. Y. et al. Mapping neurotransmitter systems to the structural and functional organization of the human neocortex. Nat. Neurosci. 25, 1569–1581 (2022).
Cammoun, L. et al. Mapping the human connectome at multiple scales with diffusion spectrum MRI. J. Neurosci. Methods 203, 386–397 (2012).
Scholtens, L. H., de Lange, S. C. & van den Heuvel, M. P. Simple brain plot (v1.0.0). Zenodo https://doi.org/10.5281/zenodo.5346593 (2021).
Acknowledgements
This work has received funding from ZonMw, the Hague, the Netherlands, project no. 09120011910032 REMOVE, the European Research Council (ERC), Brussels, Belgium, Advanced Grant 101055383 OVERNIGHT, and the Dutch Research Council (NWO), the Hague, the Netherlands, VENI 201G.064 (to J.E.S.); from the Dutch Research Council (NWO), the Hague, the Netherlands, VIDI 452-16-015 (to M.P.v.d.H.); and from the ERC under the European Union’s Horizon 2020 research and innovation program (grant agreement no. ERC CONNECT 101001062) (to M.P.v.d.H.). This work is co-funded by the European Union. Views and opinions expressed are however those of the author(s) only and do not necessarily reflect those of the European Union or the European Research Council Executive Agency. Neither the European Union nor the granting authority can be held responsible for them.
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S.C.d.L.: conceptualization; data curation; writing—original draft; formal analysis; methodology; writing—reviewing and editing. E.T.: data curation; methodology; writing—review and editing. T.B.: methodology; writing—review and editing. J.E.S.: data curation; methodology; writing—review and editing. D.P.: resources; methodology; writing—review and editing. M.P.v.d.H.: resources; methodology; writing—review and editing. E.J.W.v.S.: conceptualization; funding acquisition; methodology; writing—original draft; writing—reviewing and editing.
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de Lange, S.C., Tissink, E., Bresser, T. et al. Multimodal brain imaging of insomnia, depression and anxiety symptoms indicates transdiagnostic commonalities and differences. Nat. Mental Health 3, 517–529 (2025). https://doi.org/10.1038/s44220-025-00412-8
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DOI: https://doi.org/10.1038/s44220-025-00412-8


